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B;U|}~G]K}FHMDFHD@BFHD@BKGE9E|ƒ}tU2eMQY VDFHDpFH@pVDFHD0FH@0]S\ VDFHDpFHpVDFHD0FH0EP%e[^_É'US=t Ѓ;u[UÍt&US[/w[ calloc of %ldB failed HMM.c ERROR ON LINE %d OF FILE %s, EXITING! malloc of %ldB failed Unknown tXX=%d!Unknown alignment mode #%d!?Warning: Model %s has zero insert emissions in segment %d! Warning: model %s has zero match emissions in segment %d! @@?>z8?ACDEFGHIKLMNPQRSTVWYModel name : %s Length : %d NODE %d Transitions: D%d->D%d = %.3f M%d->D%d = %.3f I%d->D%d = %.3f D%d->M%d = %.3f M%d->M%d = %.3f I%d->M%d = %.3f D%d->I%d = %.3f M%d->I%d = %.3f I%d->I%d = %.3f S(B->M%d) = %.3f S(M%d->E) = %.3f Match emissions: %c = %.3f Insert emissions: bin005r Error opening file '%s'bin004Sorry, the file '%s' was generated by a version of PRC compiled with a different PROF_HMM_TRANS setting! Sorry, the file '%s' is not in the bin004 or bin005 formats!Begin Error reading '%s': unexpected end of file TYPE%fError parsing record %d, node %d in file '%s'!The model in file '%s' is too long! Please reset MAX_PROF_HMM_LENGTH in prc.h (currently %d) and recompile ...%sError parsing node number, node %d in file '%s'!ENDMODEL%dHMMER2.0The file '%s' is not in the HMMER2.0 format!ACC NAME Strange ACC line in file '%s', please correct it!Strange NAME line in file '%s', please correct it!LENG LENG record < 0 in file '%s', please correct it!NULE Error parsing NULE score number %d in file '%s'!HMM No LENG record in file '%s', please add it!No NULE record in file '%s', please add it! Error parsing B->D score in file %s!Error parsing match emmision score %d, segment %i in file '%s'!Error parsing insert emmision score %d, segment %i in file '%s'!Error parsing transition score %d, segment %i in file '%s'!//Error parsing file '%s': '//' line seems missing!@@@?     Warning: All probabilities in '%s' are zero! (I can handle it, but it's dodgy -- double-check the file.) = w?u< ף<33>ff&?>Y?L= ;, Error parsing file '%s': The sequence %s is too long! The limit is %d amino-acids.Error parsing file '%s': Strange character '%c' at position %d in sequence %s!Warning parsing file '%s': Strange amino-acid '%c' at position %d in sequence %s! Setting emissions to null probabilities ... .prc.mod.hmm.fa.pbla.psi.psiblast.prof.profileFile '%s' has an unknown extension! Known extensions: .prc : binary PRC formats - preferred format .mod : ASCII SAM3 models (one model per file) .hmm : ASCII HMMER2 models (one model per file) .fa : single-sequence FASTA files .profile : binary PSI-BLAST profiles ("checkpoint files") (also: .prof .pbla .psi .psiblast) @@@ calloc of %ldB failed DP_common.c ERROR ON LINE %d OF FILE %s, EXITING! malloc of %ldB failed sMMsMIsIMsIIsMDsDMsDDsIDsDIsBE£ƣm1=%d m2=%d %s=%.1e(%s) %s=%.1e w Error opening file '%s'%d %d %.6f %s %s  0@The parameter 'seq' (=%d) must be either 1 or 2!`fpvUnknown algorithm #%d!?Uknown alignment style #%d?$@#B ;$@?%s%s %sCopyright (C) 2002-5 Martin Madera and MRC LMB, Cambridge, UK %sFreely distributed under the GNU General Public License %s %s (To see the help message, run the program with no arguments.) noneprcsam1sam2dot1dot2localglobalforward/backwardViterbi%sCommand : %s %sAlgorithm : %s %sMatch-match : %s %sAlign mode : %s-%s %sAlignments : %s %sSimple stop : %.1f %sMax hits : %ld %sMax E-value : %s %sStarted : %s%s %sE-value fn : n_unrel / (1.0 + exp(lambda*reverse + kappa)) %s .. n_unrel : %ld %s .. lambda : %f %s .. kappa : %f %sWarning : n_unrel < 1000 means poor statistics! %s # hmm1 start1 end1 length1 hit_no hmm2 start2 end2 length2 simple reverse co-emis simple reverse E-value %s %d %d %d %d %s %d %d %d %6.1f %6.1f %6.1f %s >%s~%s~%d reg1=%d-%d/%d reg2=%d-%d/%d rev=%.1f E=%sw Error opening file '%s'prc.c ERROR ON LINE %d OF FILE %s, EXITING! # # END All done! rScoring : . Done! Error: Ahem, you have %ld model(s) in your library. Can only do statistics on 10 models or more! Re-scoring : $@alignment modealgorithmscoring functionalignment styleforwardviterbi &@@"@@@@ Uknown parameter type #%dError: Uknown %s ''!Error: Uknown %s '%s'! calloc of %ldB failed Sep 16 2005ALL_TRANSSPACE5PLAN9PRC 1.5.3 (%s, %s, %s), compiled on %s -algoError: Alignment algorithms set more than once!-MMfnError: Scoring function set more than once!-modeError: Alignment mode set more than once!--alignError: Alignment style set more than once!-EmaxError: Emax threshold set more than once!%lfError parsing the Emax cutoff '%s'!Error: Emax cutoff '%s' seems to be negative!-stopError: Stop threshold set more than once!Error parsing the stop threshold '%s'!-hitsError: Maximum number of hits set more than once!%ldError parsing max number of hits '%s'!Error: The maximum number of hits must be > 0 !-h--helpError: Unknown option '%s'!Unknown algorithm #%d!Uknown alignment mode %d-%d!Error: Incorrect number of arguments!Error: Uknown extension for model file '%s'!.lib%s.scores%s.alignsError: The file '%s' already exists. Please remove it first!$@? malloc of %ldB failed match.c ERROR ON LINE %d OF FILE %s, EXITING! Hz>?$@࿻|=+=࿍ư> calloc of %ldB failed stats.c ERROR ON LINE %d OF FILE %s, EXITING! %.1e%.5f%.4f%.3f%.2f%.1f%.0f-C6?hUMP?8d`?Fx?ףp= ?fffff#@<@?|= malloc of %ldB failed ?MraB3Gz8?z83333?MraB3Gz8?z83333?MraB3Gz8?z83333?MraB3Gz8?z83333? Can only run OPT_ACCUR after FORWARD=#%d or BACKWARD=#%d, not ALGORITHM=#%d, whatever it is!DP_search.c ERROR ON LINE %d OF FILE %s, EXITING! MraB3G Can only run OPT_ACCUR after FORWARD=#%d or BACKWARD=#%d, not ALGORITHM=#%d, whatever it is!DP_search.c ERROR ON LINE %d OF FILE %s, EXITING! ? malloc of %ldB failed DP_traceback.c ERROR ON LINE %d OF FILE %s, EXITING! CFPPF malloc of %ldB failed DP_traceback.c ERROR ON LINE %d OF FILE %s, EXITING! GPSSP  Usage: prc [-options] or prc [-options] Available options: -algo <> : forward (default), viterbi -MMfn <> : match-match scoring function; dot1, dot2 (default) -mode <> : local-local (default), local-global, global-local, global-global -align <> : alignment style; none (default), prc, sam1, sam2 -stop <> : stop looking for more hits when simple : stop looking for more hits when hit_no>hits (default varies) -Emax <> : only report hits with E-value<=Emax (default: 10) (See README.txt for more details.) Recognized file extensions: .prc : binary PRC formats - preferred format .mod : ASCII SAM3 models (one model per file) .hmm : ASCII HMMER2 models (one model per file) .fa : single-sequence FASTA files .profile : binary PSI-BLAST profiles ("checkpoint files") (also: .prof .pbla .psi .psiblast) & .lib : library of models (only for second argument!) The library files should be simple text files listing one filename per line. ' ` ( l n  @  oІoozΈވ.>N^n~Ήމ.>N^n~ΊGCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)GCC: (GNU) 2.95.4 20011002 (Debian prerelease)01.0101.0101.0101.0101.0101.0101.0101.0101.0101.0101.0101.0101.0101.0101.0101.0101.0101.0101.0101.0101.0101.0101.01.symtab.strtab.shstrtab.interp.note.ABI-tag.hash.dynsym.dynstr.gnu.version.gnu.version_r.rel.dyn.rel.plt.init.text.fini.rodata.data.eh_frame.dynamic.ctors.dtors.got.bss.comment.note# 1((D7 ll?  nGozzTToІPc    l @@  u``%pP{  @ DDEEEF FPJLQ\ 4` (l zІ @ `       '0 26D P0 fy   'p p     4P *P 0 8` A I ! 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" @O 4 ĖC  U `* h " t *   5 0  Q   Ȋ Letextgcc2_compiled.call_gmon_startcrtstuff.cp.3__DTOR_LIST__completed.4__do_global_dtors_aux__EH_FRAME_BEGIN__fini_dummyobject.11frame_dummyinit_dummyforce_to_data__CTOR_LIST____do_global_ctors_aux__CTOR_END____DTOR_END____FRAME_END__HMM.cmap.303map.310diff.311DP_common.cprc.cmatch.cregion.cstats.cDP_search.cDP_traceback.c__dso_handleE_valueprint_distribadd_matchsearch_LINSPACE_BACKWARDcopy_sort_matchesnice_stringset_HMM_align_modesread_HMM_SAM3x_asciisearch_LOGSPACE_BACKWARDsearch_LOGSPACE_VIT_BACKalloc_paramsfeof@@GLIBC_2.0_DYNAMICalloc_HMMtraceback_OPT_ACCUR__register_frame_info@@GLIBC_2.0localtime@@GLIBC_2.0versionusage_fp_hwget_sam_alignmentperror@@GLIBC_2.0normalize_HMMfprintf@@GLIBC_2.0score2probfflush@@GLIBC_2.0zero_dotprint_headerfree_matchesfitread_HMM_PRC_binaryprint_alignprint_column_namesget_HMM_nameread_PSIBLAST_binarysetup_HMMs_for_dot2print_matchesfree_DPdatafree_paramssearch_LINSPACE_VITERBItraceback_VITERBIscorify_HMM_M_I_initprint_settingssearch_LINSPACE_VIT_BACKparse_parammalloc@@GLIBC_2.0malloc_DPdata_Xfscanf@@GLIBC_2.0free_HMMinfofread@@GLIBC_2.0search_LINSPACE_FORWARD__deregister_frame_info@@GLIBC_2.0DP_wrapperprint_DPzero_trace_Xprint_matchstdout@@GLIBC_2.0stderr@@GLIBC_2.0write_HMM_PRC_binaryprint_help_dieread_HMMstart_timearg_errorvfprintf@@GLIBC_2.0fseek@@GLIBC_2.0time@@GLIBC_2.0_startfgets@@GLIBC_2.0copy_regioncomp_doublerun_two_HMMsmalloc_DPdata_S2censorfree_matchstrcspn@@GLIBC_2.0qsort@@GLIBC_2.0command_lineleft_padrun_two_filesgrad__ctype_toupper@@GLIBC_2.0alloc_HMMinfolog_runjoin_listsstrncmp@@GLIBC_2.0iterate_censor_fitknown_extensionmalloc_DPdata_S_tr__bss_startread_HMM_FASTAlin_runDP_finish_forw_backmainsearch_LOGSPACE_FORWARDconj_grad__libc_start_main@@GLIBC_2.0search_LOGSPACE_VITERBIexp@@GLIBC_2.0tanh@@GLIBC_2.0strcat@@GLIBC_2.0data_startasctime@@GLIBC_2.0free_HMMprintf@@GLIBC_2.0_finifclose@@GLIBC_2.1search_LINSPACE_OPT_ACCURcomp_matches_reversereverse_HMMtraceback_wrapperexit@@GLIBC_2.0calloc@@GLIBC_2.0sscanf@@GLIBC_2.0_edataread_HMM_HMMER2x_ascii_GLOBAL_OFFSET_TABLE_free@@GLIBC_2.0_endcount_matchesmemset@@GLIBC_2.0set_regioncomp_matches_E_valuestrncpy@@GLIBC_2.0fopen@@GLIBC_2.1search_LOGSPACE_OPT_ACCURget_prc_alignment_IO_stdin_usedstrtok@@GLIBC_2.0set_HMM_align_modescorify_HMMsprintf@@GLIBC_2.0fwrite@@GLIBC_2.0__data_startalloc_DPdatarun_file_against_liblog@@GLIBC_2.0write_Sxx_gnuplotprint_HMM__gmon_start__strcpy@@GLIBC_2.0