SUPERFAMILY 1.75 HMM library and genome assignments server

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KRAB domain (Kruppel-associated box) alignments in Heterocephalus glaber v1.7-2

These alignments are sequences aligned to the 0044637 model.

Sophisticated options are available for refining alignments:


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Alignments

The numbers along the top are the segment numbers of the HMM states, and each sequence is seperately aligned to the model.
The first sequence is the seed the model was built from.
Upper case letters are aligned, lower case letters are insertions, '-' signifies a deletion and '.' is nothing.

                                                                                 10         20      
                                                                                  |          |      
d1v65a_                ............................................gssgss------GVTYDDVHMNFT.EEEWDLLD
HGL_H00000410703     .................................................c--WLQDLVTFEDVAVDFT.QEEWALLD
HGL_H00000383301     .................................................r---SEESVTFKDVAVDFT.QEEWGQLD
HGL_H00000339959-1   .................................................l-------VMFEDVAIDFS.KEEWECLA
HGL_H00000352444     .................................................s----QGSVSFTDVTVGFT.QEEWQHLD
HGL_H00000419135-1   .................................................l---FQEFVTFEDVAVYLT.REEWGRLD
HGL_H00000291598     ..................................................----QDLVTFGDVSINFT.QEEWEWLN
HGL_H00000301318-2   ..................................................----QGLVTFGDVAVDFS.QEEWEWLN
HGL_H00000380394     ..................................................MAMSQESLSFRDVFVDFT.LEEWQQLD
HGL_H00000381304-1   .................................................i---LKESVTFKDVAVDFT.REEWHHMD
HGL_H00000301318-1   .................................................t-------VTFKDVAVDLT.QEEWQQMK
HGL_H00000310472     .................................................v----KESVTFKDVAIDFT.LEEWRLMD
HGL_H00000393260-1   .................................................a---FQGLVTFEDVAVYFS.LEEWERLD
HGL_H00000380272-1   ..................................................----QELVTFGDVAIDFS.QQEWEYLD
HGL_H00000366636     ..................................................------SVTFKDVVVDFT.QEEWKQLD
HGL_H00000341151     ..................................................----QVLVSFEDVTVDFS.REEWQQLD
HGL_H00000347755     ..................................................--MPQGSVTFRDVAIGFS.QEEWKWLQ
HGL_H00000413215     ..................................................--MFQLPVTFKDVAVYFS.KEEWECLS
HGL_H00000275423     ..................................................-----GPVSFKDVAVDFT.QEEWQQLD
HGL_H00000333725     ................................................sc----WGLLSFKDVSMEFS.WEEWQLLD
HGL_H00000221327-1   ..................................................----QTLVTFKDVLLDFT.REEWKLLD
HGL_H00000301480     .................................................d------SVTFEDVAVDFT.KEEWTSLD
HGL_H00000347234     ..................................................----QGLITFRDVAIEFS.QEEWKYLE
HGL_H00000378882     .................................................f---SQRAVSFEDVTVDFS.REEWQHLD
HGL_H00000347019     .................................................l---FQESLTLEDVAVRFT.REEWQLLG
HGL_H00000313355     ..................................................----QESLTFQDVAVDFT.KEEEEQLY
HGL_H00000361791     .................................................e---SQKLLNFKDISVDFN.QEEWGQLA
HGL_H00000291182     .................................................k-----EAVTFKDVAVVFS.EEELGLLD
HGL_H00000354453     ..................................................----QELVTVKDVSVDFT.WKEWMQLD
HGL_H00000300870     ..................................................-------LTFRDVAIDFS.VEEWEFLE
HGL_H00000409514-1   ..................................................-------VSFEDVVVDFT.CEEWQDLD
HGL_H00000381304-2   .................................................i---LQESVTFKDVAVDFT.REEWHHVD
HGL_H00000301318-2   .................................................a------PVTFSDLAIYFS.QEEWEWLS
HGL_H00000292928     .................................................p---LQGSVSLKDVTVDFT.EEEWQQLD
HGL_H00000253115     .................................................v--MIQESVSFDDVAVDFT.QEEWTLLD
HGL_H00000413073-1   .................................................e---PQEAATFKDVEVTFS.QDEWGCLD
HGL_H00000383643-1   ..................................................------SVSFEDVVVSFT.REEWQVLD
HGL_H00000343581-2   ..................................................----QGSVMFSDVSIIFS.QEEWEYLD
HGL_H00000354680     ..................................................--MTQESVSFEDVAVDFT.QEEWILLD
HGL_H00000313582     ..................................................MAGSQGPVTFEDMAMYLT.REEWRPLD
HGL_H00000376010     .................................................m---------FSDVSIDFS.QEEWECLT
HGL_H00000325018-2   .....................leclqpesdltqhdeihtgkqlyeckack------------------.--------
HGL_H00000375586-2   .................................................r---WQDSVTFGDVAVDFS.WEEWKLLN
HGL_H00000223459     .................................................g------AVKFADVAVYFS.PEEWGCLR
HGL_H00000301318-1   .................................................m--------NFKDVAIYFS.QKEWECLH
HGL_H00000385099-1   .................................................l---VQGCVTFEDVTIYFS.QEEWGLLS
HGL_H00000385099-2   gaearnatlsrgqgrvrvglspreppqspaekaplgpeglmavsvqqdlv---QHGCVTFEDV-----.--------
HGL_H00000410890-2   .................................................v---PKVPVTFSDVAVYFS.EQEWGELE
HGL_H00000333192-2   .................................................k---SQVSVSFTDVTVDFT.QEEWEQLD
HGL_H00000395007     .................................................e-----VPVTFDDVAVYFS.EQEWGKLE
HGL_H00000411051     ..................................................----QESVTFEDVAVIFT.DEEWRHLV
HGL_H00000410890-1   .................................................v---PKVPVTFSDVAVYFS.EQEWGELE
HGL_H00000333192-1   ..................................................----QVSVSFTDVTVDFT.QEEWEQLD
HGL_H00000385099-2   .................................................q----HGCVTFEDVTIYFS.QEEWGLLS
HGL_H00000337555-2   ..................................................----QGRVVFEDVAIYFS.QEEWGHLS
HGL_H00000380840-34  ..................................................--MFQNPVFYEDVAVNFT.LEEWALLN
HGL_H00000379702     ..................................................-------LTFRDVAIEFS.QEEWKCLN
HGL_H00000311596-2   .................................................m---IQDSLTFEDLAVDFT.PEEWALLD
HGL_H00000380840-24  ..................................................-------VTFEDVAVNFT.MEEWALLD
HGL_H00000342974-2   ..................................................----QDSVAFEDVSVDFT.QEEWALLD
HGL_H00000339767     .................................................e------AVTFEDVTVTFT.MEEWALLN
HGL_H00000380840-15  .................................................a-------VTFEDVAVNFT.MEEWALLD
HGL_H00000342974-3   ..................................................-------VTFEDVAVNFT.QEEWALLK
HGL_H00000333802     ..................................................------LVSFEDVAVTFT.GEEWRHLD
HGL_H00000287461     .................................................a-------LKFADVAVYFS.PEEWGCLR
HGL_H00000382987     .................................................a-------MTFEDVAVDFT.MEEWALLD
HGL_H00000379370     .................................................a--QPQELVMFEEVSVCFT.SEEWACLG
HGL_H00000380840-1   ..................................................------LVTFEDVAVSFT.QEEWALLD
HGL_H00000303820     ..................................................---WQGCVTFDDVAIYFT.WEEWRLLD
HGL_H00000380840-25  ..................................................----QDPVTFEDVAVNFT.IEEWALLK
HGL_H00000292562     ..................................................-------LTFQDVAVYFS.RAERRQLG
HGL_H00000396402     .................................................i------PVSFKDVVVGFT.QEEWHQLN
HGL_H00000380315-3   ..................................................-------VTFEDVAVNFS.VEEWALLD
HGL_H00000380840-23  .................................................a-------VTFEDVAVNFT.MEEWALLN
HGL_H00000380840-29  .................................................a-------VTFEDVAVNFT.MEEWTLLN
HGL_H00000338770-1   ..................................................------LVTFRDVALNFS.QEEWEWLD
HGL_H00000311596-3   .................................................m---IQDSLTFEDLAVDFS.PEEWALLD
HGL_H00000282308     ..................................................----QGTVIFEDVAVYFS.WEEWDLLD
HGL_H00000355459     .................................................e------AVTFEDVAVTFT.MEEWALLN
HGL_H00000409872-2   .................................................p----EEPVTFQDVSVDFS.QEEWGLLG
HGL_H00000254321-2   .................................................t-------VTFEDVAVNFT.MEEWTLLN
HGL_H00000334853     ..................................................------SVVFEDVAVQFT.QEEWALLD
HGL_H00000380840-4   .................................................a-------VTFKDVAVNFT.MEEWALLN
HGL_H00000380840-5   .................................................a-------VTFEDVAVNFT.AEEWALLD
HGL_H00000380315-4   .................................................a-------VTFEDVAVNFT.VEEWALLN
HGL_H00000380293     ..................................................-------LTFRDVAIDFS.PEEWECLE
HGL_H00000380840-10  .................................................a-------VSFEDVAVNFT.VEEWALLD
HGL_H00000380840-13  ..................................................------PVTFEDVAVNFT.MQEWALLD
HGL_H00000379168-1   .................................................v---TEESMTFKDVAVDIT.QEDWELMR
HGL_H00000380840-8   .................................................a-------VTFEDVAVNFT.KEEWAFLD
HGL_H00000380840-11  ..................................................-------VSFEDVAVNFT.MEEWALLD
HGL_H00000398108     .................................................v---PKVPVTFDDVAVHFSeQXEWGNLS
HGL_H00000321049     ..................................................-------VTFKDVAVVFT.TEELGLLD
HGL_H00000380315-1   .................................................a-------VTFEDVAMNFS.REEWALLD
HGL_H00000412998     .................................................i---AQGSVTFDDVAIHFS.WDEWHLLD
HGL_H00000407039     ..................................................----QGHVTFEDIAVYFS.QEEWGLLD
HGL_H00000417470     ..................................................------PLTFEDVAIYFS.EQEWQDLE
HGL_H00000254166     .................................................l----QGLVIFEDVALHFS.QEEWGLLT
HGL_H00000405289     ..................................................------SVTFEDVALDFT.QEEWVLLD
HGL_H00000380840-33  ..................................................-------VTFEDVAVTFT.MEEWALLD
HGL_H00000393265     .................................................a-------VTFKDVAVAFT.EEELGLLD
HGL_H00000408168     .................................................a--RSQETVTFKDVAMDFT.PEEWGKLD
HGL_H00000252797     .................................................a-------ITFADVAVYFS.PEEWGCLQ
HGL_H00000380272-7   ..................................................-------LTFEDVAVDFT.MEEWALLD
HGL_H00000359802     .................................................e-----NLLTFEDVAVYFS.EEEWQLLD
HGL_H00000223210     ................................................kl------PAMFEDVAVYFT.REEWGLLD
HGL_H00000380272-5   ..................................................-------VTFEDVAVNFT.MEEWTLLN
HGL_H00000410913     ..................................................-------VIFEDVAVNFT.MEEWALLD
HGL_H00000254321-4   ..................................................-------VTFEDVAVNFT.MEEWALLN
HGL_H00000339959-2   .................................................e------LLIFRDMAIHFS.PEQWECLE
HGL_H00000380840-19  .................................................a-------VIFEDVVVRFT.MEEWDLLN
HGL_H00000356850     ................................................pa--------LFDEVAIYFS.DEEWEVLT
HGL_H00000338984     .................................................p----KVPVAFDDVSIYFS.TPEWEKLE
HGL_H00000375586-3   ..................................................-------VTFEDVFVYFS.QEEWELLE
HGL_H00000388311     ..................................................-----------DVAIEFS.QEEWKGLD
HGL_H00000228289     ..................................................-------VTFEDVAVTFT.VEEWALLN
HGL_H00000380840-17  .................................................a-------VTFEDVTVNFT.MEEWALLN
HGL_R00000062379     ................................................pa--------LFDEVAIYFS.DEEWEVLT
HGL_H00000380840-30  ..................................................-------VTFEDVAVNFT.LEEWVLLN
HGL_H00000255992     .................................................r----QVPISFKDLAVRFS.EEEWRLLE
HGL_H00000372310-2   ..................................................--------TMEDVTIKFT.PEEWALLD
HGL_H00000402985     .................................................a-------VTLEAVAVNFT.MEEWAVLN
HGL_H00000354414     ..................................................--MFQDSVTFDDVVVNFT.LDEWDLLD
HGL_H00000293995     ..................................................--------------MYFS.QEEWELLD
HGL_H00000219069     ...........................masfpgsqeregllivkleedca--------------W---.--------
HGL_H00000301042     .................................................g---SQGLVTIKDVSLCFS.QEEWRSLD
HGL_H00000372310-1   ..................................................-------LTIEDVTIKFT.PEEWALLG
HGL_H00000412999-2   ..................................................-------VTFEDVVIRFN.QEEWDQLD
HGL_H00000363344     ..................................................------------------.-EEWEKLG
HGL_H00000380840-3   .................................................e------AVTLEDVAVNLT.KVEWASLN
HGL_H00000377725     .................................................a-----------DMAVSFI.LEEWEHLD
HGL_H00000337724     .................................................a--LSQGLVTFKDVAVCFS.QDQWSDLD
HGL_H00000311679     .................................................e------SIVFKDVAITFS.RREWRKLE
HGL_H00000371627     .................................................a--WSQMPVTFEDVALYLS.REEWGRLD
HGL_H00000342019     .................................................k------------------.-EEWDYLD
HGL_H00000323148     .................................................d---SQAMVKIEDMAVSLI.LEEWGCQN
HGL_H00000376616     .................................................v------TITFDDVALYFL.EQEWEILE
HGL_M00000054631     ..................................................------------------.-EEWALLD
HGL_H00000376616     .................................................t-------ITFDDVALYFL.EQEWEILE
HGL_H00000380087     .................................................l----------GDIPFYFS.REEWGSLD
HGL_H00000361784     ..................................................------------------.------LD
HGL_H00000265174     ............................elprslckkaklghgaqnwgmq------------------.--------
HGL_H00000380840-14  ..................................................------------------.-EEWALLD
HGL_H00000384582     ................................leilpdenpeldkafsvl------------------.--------
HGL_H00000342974-1   ..................................................------------------.-EEWVLLN
HGL_H00000254321-1   ..................................................------------------.-EEWALLD
HGL_H00000380840-9   ..................................................------------------.-EEWALLD
HGL_H00000301744     .................................................a----QEPILFDDLAVYFS.QEECVNLN
HGL_H00000332750-1   .................................................f----QTLEKLEDMAVSLI.REEW-FLD
HGL_H00000315664     ..................................................------------------.QEQWRHLD
HGL_H00000337363     .................................................a---PQGLVTLEAVS--VT.WEEWEHLD
HGL_H00000270617     ................................................at----------HDMGMDFT.LEDWEQPG
HGL_H00000221327-2   ................................................ap---SHEGVNFKIVTVDFT.HEDQGTWN
HGL_H00000413411-2   ..................................................------------------.--------
HGL_H00000416158     ...................................mfgagdeddtdflsp------------------.--------
HGL_H00000338572     .................................................x------------------.---WENLA
HGL_H00000336565     .................................................p------------------.QERWVLLD
HGL_H00000223210     .................................................k-----APVTFDDITVYLL.QEEWLLLS
HGL_H00000301318-2   .................................................n------MVTSANVAVGFA.P----QLE
HGL_H00000355454     ................................................sp---------FKDMILCFS.EEDWSLLD
HGL_H00000095634     .................................................f---FQGLVPSGDAVQYLT.EREWLKLD
HGL_H00000301480     ..................................................--------TFEDVAVDGP.QVEKPLMN
HGL_H00000397178     ..................................................------------------.--------
HGL_H00000331039     ..................................................------------------.--------
HGL_H00000331465     ..................................................------------------.--------
HGL_H00000331626     ...............................................sqe------PVKDVHVLRGFS.HKKTVHQI
HGL_H00000306351-2   ..................................................------------------.--------
HGL_H00000338770-2   ..................................................------------------.--------
HGL_H00000415358-3   .................................................h-----ELMTVKDEEMDFI.RDKVAQLD


                         30          40           50        60                               
                          |           |            |         |                               
d1v65a_                SSQKRLYEE.VML.ETYQNLTD.I.G.YNWQDHHIE-------esgpssg....................
HGL_H00000410703     TSQRSLYRE.VML.ENCRNLAS.L.G.CHVGKPSLISQLEQE-...........................
HGL_H00000383301     SPQRALYRD.VML.ENYQNLVA.L.G.PPVCKPDVISHLERGE...........................
HGL_H00000339959-1   PSQRNLYRD.VML.ENYNTFIS.L.G.LATSKPSVISLLEQGK...........................
HGL_H00000352444     TSQKSLYRD.VML.ENYNHLVS.V.G.YCVTKPELIFRLEQGE...........................
HGL_H00000419135-1   PVQRDLYRE.VML.ENYGNVVS.L.G.FPISTPDGISQLEQ--...........................
HGL_H00000291598     PVQRNLYRK.VML.ENYRSLVS.L.G.VSVSKPDVISLLEQG-...........................
HGL_H00000301318-2   ATQRSLYRK.VML.ENYWNLAS.L.G.LCASKPDMISSLEQG-...........................
HGL_H00000380394     SVQKNLYRD.VML.ENYSHLVS.V.G.YLVGQPDAI-------s..........................
HGL_H00000381304-1   SAQRSLYRD.VIL.ENYSHLVS.L.V.YQVSKPEVIFKLEQGE...........................
HGL_H00000301318-1   PVQRNLYRD.VML.ENYSNLVT.V.G.CQVTKPDVIFKLEQEE...........................
HGL_H00000310472     PTQRKLHKD.VML.ENYRNLAS.L.G.LAVSKPDMISHLENG-...........................
HGL_H00000393260-1   VNQRALYQE.VMQ.ENYGILVS.L.G.YPVPKPELIFRLEQGE...........................
HGL_H00000380272-1   LRQRDLYRD.VML.ENYRNLES.L.G.HSISKPDVIDLLEQG-...........................
HGL_H00000366636     PGQRDLFRD.VTL.ENYTHLVS.I.G.LQVSKPDVISQLEQG-...........................
HGL_H00000341151     STQRCLYHD.VML.ENYSHLLS.L.G.FEVPKPEIIFKLEHGE...........................
HGL_H00000347755     PAQRDLYRC.VML.ENYGHLVS.L.G.LSIFKPVVVSLLEQG-...........................
HGL_H00000413215     PKQRALYRN.VML.DNFRSLVA.L.G.FCGPRPDLVSRLEQ--w..........................
HGL_H00000275423     RDEKMTYRD.VML.ENYNNLIS.V.G.YDVTKPNVIIKLEQGE...........................
HGL_H00000333725     STQRHLYRE.VTL.ENYSNLLS.V.G.YHGTKPELIFKMEQGE...........................
HGL_H00000221327-1   AAQQIMYKD.VML.ENYKNLVS.L.G.HQLPKPDMILRLEKGE...........................
HGL_H00000301480     PTQRNLYKD.VML.ENYQNLST.V.G.RQLLKPSLISWLE---e..........................
HGL_H00000347234     PSQRDLYKD.VTL.ENFSHLVT.L.G.LSISKPDVISLLEQG-...........................
HGL_H00000378882     LAQKSLYRD.VML.ENYFNLIS.V.G.CQVPNLEVIFSWEP--g..........................
HGL_H00000347019     PAQKDLYRD.VML.ENYSSLVS.V.G.YQASQPDSL-------ss.........................
HGL_H00000313355     PAQKNLYRD.VML.ENYRNLVA.L.G.HQVYKPAVITQLEQEE...........................
HGL_H00000361791     PAHRNLYRE.VML.ENYRNLVS.V.G.YHFSKPSVISQLEKGE...........................
HGL_H00000291182     SAQRKLYRD.VML.ENFRNLLS.V.G.HQSFKPDVISQLER--e..........................
HGL_H00000354453     PAQRNLCGK.VML.ENYRNLIS.L.G.HQLSKPNVMSQLEQE-...........................
HGL_H00000300870     PAQQNLYRD.VMI.ENYRNLLS.L.G.LAVTKPYLITFLEQ--s..........................
HGL_H00000409514-1   DAQRTLYRD.VML.ETYRSLVL.L.G.HCITKPEVIFKLEQG-...........................
HGL_H00000381304-2   SAQRSLYRD.VML.ENYSHLVS.L.D.WKTRPE----------akssklq....................
HGL_H00000301318-2   PTQKELYEE.VML.ENYRNLVS.V.G.LCLRRPNVITLLEK--g..........................
HGL_H00000292928     TAQKALYMD.VML.ENYCHFIS.M.G.FHITNPETIHELEQGE...........................
HGL_H00000253115     PTQRNLYGD.VML.ENYQNLAT.V.G.I---------------h..........................
HGL_H00000413073-1   STQRNLYRD.VML.ENYGNAAS.L.A.ISCSKPALISWLE---ar.........................
HGL_H00000383643-1   DAQRTLYRD.VML.ETYCSLLL.L.G.HCITKPEVIFKLEQG-...........................
HGL_H00000343581-2   REQRNLYRN.VMM.ENYSNLVS.LaG.CFISKPDVITLLEQG-...........................
HGL_H00000354680     PTQRNLYSD.VML.ENYQNLAS.M.E.WKVGLK----------tkesal.....................
HGL_H00000313582     PTQRDLYRD.VMQ.ENYGNVVS.L.D.FEIRSEN---------ev.........................
HGL_H00000376010     DDQRDLYRD.VML.ENYSNLVS.MaG.LCISKPNVISYLEQGK...........................
HGL_H00000325018-2   ---------.---.----R---.-.-.----------------tfslkqnfiehkkmhtgekshectecg
HGL_H00000375586-2   EMQRLLYRD.VML.ENFGLVAS.L.G.LVSSQIHVLVQLE---...........................
HGL_H00000223459     PAQRALYRD.VMR.ETYGLLSA.L.G.FPGPKPALISWMEQE-...........................
HGL_H00000301318-1   SVQKALYRD.VML.ENYQNLIS.L.R.LSDTTPSVISLLEQG-...........................
HGL_H00000385099-1   EAQRLLYCD.VML.ENFALIAS.L.G.LTSFRCHVIAQLE---v..........................
HGL_H00000385099-2   ---------.---.--------.-.-.----------------...........................
HGL_H00000410890-2   DWQKELYKH.VMR.GNYETLVS.L.D.YAISKPDILAQMERGE...........................
HGL_H00000333192-2   LSQRILYMD.VML.ENYSNLLS.V.E.VW--------------kad........................
HGL_H00000395007     DWQKELYKH.VMR.GNYETLVS.L.D.YAISKPEVLSQIDQG-...........................
HGL_H00000411051     PVQRALYQA.VML.ENYESIVS.L.G.LPVPPPDVIFWLKR--g..........................
HGL_H00000410890-1   DWQKELYKH.VMR.GNYETLVS.L.D.YAISKPDILAQMERGE...........................
HGL_H00000333192-1   PSQRILYMD.VML.ENYSNLLS.V.E.VWK-------------addqm......................
HGL_H00000385099-2   EAQRLLYCD.VML.ENFALIAS.L.G.LTSFRCHVIAQLE---v..........................
HGL_H00000337555-2   EAQRLLYCD.VML.ENLALLSS.L.G.CWHGAKDEEALFEQG-...........................
HGL_H00000380840-34  PSQKTLYRD.VML.EVFKNLAS.I.G.NKWEDQNIE-------dq.........................
HGL_H00000379702     PAQRTLYRD.VML.ENYRNLVS.L.D.----------------ts.........................
HGL_H00000311596-2   LAHRKLYRD.VML.ENFQNLTS.L.G.FKIL------------lkt........................
HGL_H00000380840-24  PSQKKLYRD.VMW.ENFRNVAS.I.G.RNWDNQQ---------ied........................
HGL_H00000342974-2   PLQKKLYRD.VMW.ETFRNLAY.V.G.SKWEDQQI--------kdqy.......................
HGL_H00000339767     PSQKKLYRD.VMQ.ETFRNMAT.V.G.GNWEKQ----------k..........................
HGL_H00000380840-15  PSQKKLYRD.VMW.ENFRNVAA.I.G.RNWDD-----------qqie.......................
HGL_H00000342974-3   PSQKNLYRA.VMQ.ETFWNLAS.V.G.RPHEC-----------nk.........................
HGL_H00000333802     LTQRTLYQE.VML.ETCELLVS.L.G.CPVPKAELMYPLEY--g..........................
HGL_H00000287461     PAQRTLYRD.VMR.ETYGLLGA.L.G.CAGPKPALISWLE---r..........................
HGL_H00000382987     PSQKKLHRD.VMW.ENFTNVTA.I.G.RNWEN-----------qqq........................
HGL_H00000379370     PIQRALYWD.VML.ENYGNVTS.L.E.WETMMENE--------ev.........................
HGL_H00000380840-1   PFQKNLYRD.VMR.ETLSNLAF.V.G.RPCQK-----------ikt........................
HGL_H00000303820     EAQRLLYFN.VML.QNFALTSS.L.G.CGHGTQDEEAPSEQ--...........................
HGL_H00000380840-25  PSQKKLYRD.VMW.ETFKNMTV.I.G.RTWDNQQIEQ------tyk........................
HGL_H00000292562     PGQRALYRD.VML.ENYGNVAS.L.G.FPIPKPELISQLERGE...........................
HGL_H00000396402     PAQRALYRD.VML.ETYSNLVS.V.E.H---------------s..........................
HGL_H00000380315-3   PSQKKLYRD.VMW.ENFRNVTA.L.D.VRAFSTPIYVQLQ---e..........................
HGL_H00000380840-23  PSQKNLYRD.VMG.ETFRNMVS.I.G.QFI-------------ta.........................
HGL_H00000380840-29  PSQKKLYRD.VMR.ETFRNLAA.V.G.RAWDNQEVE-------eey........................
HGL_H00000338770-1   PSQKDLYRE.VML.ENYKNLVW.L.D.WE--------------sw.........................
HGL_H00000311596-3   LAQRKLYRD.VML.ETFRNLAS.L.-.----------------vlc........................
HGL_H00000282308     ETQRDLYHS.VML.ENLALVTS.L.G.CLC-------------ea.........................
HGL_H00000355459     LSQKNLYRD.VMW.ETFINMAA.V.G.TTWDNQ----------ei.........................
HGL_H00000409872-2   PVQRTEYHD.VML.ETLGNLVS.V.G.WETAAEN---------kel........................
HGL_H00000254321-2   PSQKKLYRD.VMR.ETFRNMTA.I.G.RACDDQE---------ve.........................
HGL_H00000334853     SAQRDLYRD.VML.ETFWNLAS.I.N.----------------de.........................
HGL_H00000380840-4   PSQKKLYRD.VMR.ETFRNMTA.I.G.TV--------------w..........................
HGL_H00000380840-5   PSQKKLYRD.VMW.ETFRNVTA.I.E.RNCNDQ----------qve........................
HGL_H00000380315-4   PSQKKLYRD.VME.ETFRNMAA.I.G.RAWDNQEVEEEC----kn.........................
HGL_H00000380293     PAQWNLYRD.VML.ENYRNLVF.L.A.V---------------sth........................
HGL_H00000380840-10  PFQKKLYRD.VMC.ETFRNVAA.L.G.RTWDNEEI--------ed.........................
HGL_H00000380840-13  PSQKKLHRD.VMW.ENFRNVAA.V.G.RNWNDEQ---------ied........................
HGL_H00000379168-1   PVQKELYKT.VTL.QNYWNMVS.L.G.LTVYRPTVIPILE---e..........................
HGL_H00000380840-8   PSQKKLYRD.VMW.ETLRNLAA.I.G.R---------------ssgd.......................
HGL_H00000380840-11  PSQKKLYRD.VMW.ETFRNVAD.I.G.KNNI------------lshl.......................
HGL_H00000398108     EWQKELYKN.VMR.GNYESLVS.M.D.YAISKPDLMSQMERGE...........................
HGL_H00000321049     CTQKKLYED.VMV.ENFKNLVA.V.G.HLPFKPDMVSQLEA--e..........................
HGL_H00000380315-1   PSQKKLYRD.VMW.ETLRNLAA.I.G.ES--------------fs.........................
HGL_H00000412998     EAQRCLYHD.VMM.ENLALITS.L.D.T---------------h..........................
HGL_H00000407039     ETQRFLYLD.VML.ENFALTTS.L.-.----------------vc.........................
HGL_H00000417470     MWQKELYKG.VMR.TNYETLVF.L.D.GALSKPELISWIEQG-...........................
HGL_H00000254166     VAQRSLYRD.VML.ENFALISS.L.G.K---------------sss........................
HGL_H00000405289     QSHRDLYRE.VML.ENYENLTS.R.G.----------------kn.........................
HGL_H00000380840-33  SSQKKLYRD.VMW.ETFSNVSA.I.G.RNWDDQ----------qiede......................
HGL_H00000393265     SAQRKLYQD.VMV.ENFRNLVS.V.E.HQLFKQD---------rsh........................
HGL_H00000408168     PAQR----D.VML.ENYRNLVS.L.W.LPVSKPE---------n..........................
HGL_H00000252797     PTQRALYRD.VMR.DTYVLLSA.L.G.GGGAKPALISWVE---r..........................
HGL_H00000380272-7   PSQKKLHRD.VMW.ENFRNVAS.I.E.----------------i..........................
HGL_H00000359802     PNQKALYND.VMQ.DTYETASF.L.G.----------------k..........................
HGL_H00000223210     KQQKELYRN.VMQ.MNYELLAS.L.G.K---------------api........................
HGL_H00000380272-5   PSQKKLYRD.VMR.ETFRNMTA.I.-.----------------a..........................
HGL_H00000410913     PPQNKLYRD.VMW.ETFQNVTA.I.G.RNI-------------ddqqie.....................
HGL_H00000254321-4   PSQKKLYRD.VMG.ETFRSMAA.V.G.HLV-------------n..........................
HGL_H00000339959-2   AALQNMYRD.VML.ETYGNLVS.L.G.FAGSTLNPITFLEQ--s..........................
HGL_H00000380840-19  PSQKKLYRD.VMG.ETFRNMAA.V.G.RAWDNQE---------le.........................
HGL_H00000356850     EQQKALYRE.VMR.MNYETVLS.L.E.FPFPKPDMISRLER--e..........................
HGL_H00000338984     EWQKELYTN.IMK.GNYESLIS.M.D.YAMSQPDVLSQIQ---p..........................
HGL_H00000375586-3   EAQRFLYHD.VML.ENFALVAT.L.-.----------------a..........................
HGL_H00000388311     PAQRTLYRD.VML.ENYRNLVS.L.-.----------------v..........................
HGL_H00000228289     PSQKQLYRD.VMR.ETFRNMAA.-.-.----------------i..........................
HGL_H00000380840-17  ASQKKLYRD.VMG.ETFMNIAA.I.G.RAWDNQEV--------eee........................
HGL_R00000062379     EQQKALYWE.VMR.MNYETVLS.L.E.FPFPKPDMI-------...........................
HGL_H00000380840-30  SSQKKLYRD.VMS.EIFKNLAA.I.E.PNWNGQQIENQC----k..........................
HGL_H00000255992     EGQREFYRD.VMR.ENYEALVS.V.G.T---------------a..........................
HGL_H00000372310-2   TPQRKLYRN.VMV.ENINHLLS.L.E.YQLCESD---------ln.........................
HGL_H00000402985     LSQKKLYRN.VMW.ETLMNTTA.I.G.RTWGKPQI--------eg.........................
HGL_H00000354414     YSQRELYRD.VVG.EIFMSLAF.I.G.EKW-------------nq.........................
HGL_H00000293995     TTQKALYND.VMQ.ENYENVIS.V.AlFGLPKPKVISCLEQGE...........................
HGL_H00000219069     ---------.---.--------.-.-.----------------sqelpppdpgpspeashlrfrrfrfqe
HGL_H00000301042     PSQTDFYGEyVMQ.ENCGIVVS.L.R.FPIPKLDMLSQLG---gg.........................
HGL_H00000372310-1   TPQRKLYRN.VMA.ENINHLLS.L.G.----------------gr.........................
HGL_H00000412999-2   LSKRTLYWE.VML.ETCGLLIA.V.A.----------------dsvcsr.....................
HGL_H00000363344     PAQKDLYKD.VML.ENYSNLAS.I.G.YQAPKPDI--------ck.........................
HGL_H00000380840-3   PPQKKLYRD.VMW.EAYMHMTA.I.E.RTCGNQQ---------irtvy......................
HGL_H00000377725     QSQKSLYRD.GRK.ENYGSITS.L.D.YESKDNNMELTAKQ--...........................
HGL_H00000337724     PTQKEFYGE.YVLeEDCGIVVS.L.S.FPIPRLDDI-------sq.........................
HGL_H00000311679     PFQKELYKD.VLQ.ENLRNLEF.L.E.C---------------ep.........................
HGL_H00000371627     HTQQNFYRD.VLQ.K-------.-.-.----------------kng........................
HGL_H00000342019     PAQRSLYKD.VMM.ENYGNLVS.L.D.VLNRDKDEEPAV----kq.........................
HGL_H00000323148     LARRNLNRD.SRQ.ENYGNMFS.Q.G.RENRSENKES------tsk........................
HGL_H00000376616     MWQKEIYAQ.VMK.ANYEALDF.L.D.----------------aq.........................
HGL_M00000054631     PSQKKLHRD.VMW.ETFTNVTA.I.G.RNWEN-----------qqq........................
HGL_H00000376616     MWQKEIYAQ.VMK.ANYEALDF.-.-.----------------l..........................
HGL_H00000380087     PAQRDLFWD.IKR.ENSRNT--.-.-.----------------t..........................
HGL_H00000361784     CDQRMMYWD.VML.DNYRNLIS.V.G.SPVTKPKVILKVEQG-...........................
HGL_H00000265174     ---------.---.-R------.-.-.----------------atnvtyqahhvsrnkr...........
HGL_H00000380840-14  PSQKELHRD.VMW.ENFRNVAA.V.G.RNW-------------dnqq.......................
HGL_H00000384582     ------I--.---.--------.-.-.----------------lsvssgslgvhtnatli..........
HGL_H00000342974-1   PSQKKLYRD.VME.ETFRNIVA.I.G.RAWDNQEV--------eed........................
HGL_H00000254321-1   PFQKKLHKD.VMW.ENFRNVAS.I.G.RKC-------------ddqq.......................
HGL_H00000380840-9   PSQKKLHRD.VMW.ENFTNVTA.I.G.RNW-------------dnq........................
HGL_H00000301744     PAQKSLTRE.ATQ.ECSNDVTL.M.G.----------------...........................
HGL_H00000332750-1   PSKKDLSRD.NRP.ENCRNTFS.L.G.GETRNENKE-------ltsk.......................
HGL_H00000315664     STQKEQYWD.LML.ETYGKMVSgA.G.ISNSKPNLTN------saec.......................
HGL_H00000337363     AAQRDFHRE.SSH.KDYQSMVL.P.S.LETRAENKELIP----kq.........................
HGL_H00000270617     LDQGDLFWD.TAL.DNYQNLPM.L.N.PPR-------------psp........................
HGL_H00000221327-2   PAVRTPDRG.VTL.ENHRDLVS.W.D.LATAFGRRESTLKQG-...........................
HGL_H00000413411-2   -----MYRD.VML.ETYRNLVS.L.G.FAGSTPNLITFLEQ--s..........................
HGL_H00000416158     -R-------.---.--------.-.-.----------------ggarlaslfgldqpaa...........
HGL_H00000338572     DWQKELYRN.VMQ.SNYEALVS.L.K.----------------v..........................
HGL_H00000336565     RSQKELYWD.AML.QKYGSAVS.L.G.----------------e..........................
HGL_H00000223210     QQQKDLC--.---.--------.-.-.----------------gs.........................
HGL_H00000301318-2   PAQKSFCKT.VLW.ENHGALGA.L.G.HCVSKPDLVAFLESG-...........................
HGL_H00000355454     PAQTGFYGE.F--.--------.-.-.----------------ii.........................
HGL_H00000095634     PEQRTLAY-.---.--YGHVTS.V.G.VPILHPTLTSHLAQG-...........................
HGL_H00000301480     PTRRSIHSD.GMV.KNYQNVAT.V.G.CQT-------------p..........................
HGL_H00000397178     ---------.-ML.ENYSHLVS.M.G.YPVSKPDVISKLEQGK...........................
HGL_H00000331039     ---------.-ML.ENYNNLVS.V.G.CHIIKPDVIIKLEQGE...........................
HGL_H00000331465     ---------.-ML.ENYSSLVS.L.G.YTVMKPDVIFKLEQGE...........................
HGL_H00000331626     PVHRDLYRE.IRK.ENVGNTVS.L.G.NTVSPSNKIARLEQ--r..........................
HGL_H00000306351-2   ---------.-ML.ENYSHLVS.L.G.YPITKPDLIASLEQG-...........................
HGL_H00000338770-2   ---------.-MM.ENYGNLIS.L.G.HSISKPDVITLLEQG-...........................
HGL_H00000415358-3   SAPRCLTTD.IKV.EDCGNLMF.W.D.SEC-------------mpd........................


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Include all superfamily members: , or just those assigned by the selected model:
Initial T99 seed sequence: NoYes

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Model: 0044637 (list models)
Initial SAMT99 seed:
Alignment:



Display Options:
Output in FASTA-like format: NoYes
Output column indices: NoYes
Sequence index (number) on each line: NoYes

Max number of insertions shown: (0 does not show insertions)
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Add alignments from genomes

Select below additional genomes you would like to see alignments for, then click on 'Re-Submit'. The genome assignments will be added to this page.


Select to display   Genome
NoYes   Canis familiaris 58 (pseudogenes) - Dog
NoYes   Gallus gallus 58 (pseudogene) - Chicken
NoYes   Homo sapiens 58 (pseudogenes) - Human
NoYes   Mus musculus 56 (pseudogenes) - House mouse
NoYes   Pan troglodytes 58 (pseudogenes) - Chimpanzee
NoYes   Homo sapiens 76_38 - Human
NoYes   Pan troglodytes 76_2.1.4 - Chimpanzee
NoYes   Gorilla gorilla 76_3.1 - Western gorilla
NoYes   Pongo abelii 76_2 - Sumatran orangutan
NoYes   Tarsius syrichta 76_1
NoYes   Nomascus leucogenys 76_1.0 - Northern white-cheeked gibbon
NoYes   Papio anubis 76 - Olive baboon
NoYes   Macaca mulatta 76_1 - Rhesus monkey
NoYes   Callithrix jacchus 76_3.2.1 - White-tufted-ear marmoset
NoYes   Otolemur garnettii 76_3 - Small-eared galago
NoYes   Microcebus murinus 76_1 - Gray mouse lemur
NoYes   Rattus norvegicus 76_5.0 - Norway rat
NoYes   Mus musculus 76_38 - House mouse
NoYes   Dipodomys ordii 76_1 - Ord's kangaroo rat
NoYes   Ictidomys tridecemlineatus 76_2 - Thirteen-lined ground squirrel
NoYes   Heterocephalus glaber v1.7-2 - Naked mole-rat
NoYes   Cavia porcellus 76_3 - Domestic guinea pig
NoYes   Oryctolagus cuniculus 76_2 - Rabbit
NoYes   Ochotona princeps 76 - American pika
NoYes   Tupaia belangeri 76 - Northern tree shrew
NoYes   Sus scrofa 76_10.2 - Pig
NoYes   Bos taurus 76_3.1 - Cattle
NoYes   Ovis aries 76_3.1 - Sheep
NoYes   Vicugna pacos 76_1 - Alpaca
NoYes   Tursiops truncatus 76_1 - Bottlenose dolphin
NoYes   Mustela putorius furo 76_1.0 - Domestic ferret
NoYes   Ailuropoda melanoleuca 76_1 - Giant panda
NoYes   Canis familiaris 76_3.1 - Dog
NoYes   Felis catus 76_6.2 - Domestic cat
NoYes   Equus caballus 76_2 - Horse
NoYes   Myotis lucifugus 76_2.0 - Little brown bat
NoYes   Pteropus vampyrus 76_1 - Large flying fox
NoYes   Sorex araneus 76_1 - European shrew
NoYes   Erinaceus europaeus 76 - Western European hedgehog
NoYes   Procavia capensis 76_1 - Cape rock hyrax
NoYes   Loxodonta africana 76_3 - African savanna elephant
NoYes   Echinops telfairi 76 - Small Madagascar hedgehog
NoYes   Dasypus novemcinctus 76_2 - Nine-banded armadillo
NoYes   Choloepus hoffmanni 76_1 - Hoffmann's two-fingered sloth
NoYes   Macropus eugenii 76_1.0 - Tammar wallaby
NoYes   Sarcophilus harrisii 76_7.0 - Tasmanian devil
NoYes   Monodelphis domestica 76_5 - Gray short-tailed opossum
NoYes   Ornithorhynchus anatinus 76_5 - Platypus
NoYes   Meleagris gallopavo 76_2 - Turkey
NoYes   Gallus gallus 76_4 - Chicken
NoYes   Anas platyrhynchos 76_1.0 - Mallard
NoYes   Taeniopygia guttata 76_3.2.4 - Zebra finch
NoYes   Ficedula albicollis 76_1.0 - Collared flycatcher
NoYes   Pelodiscus sinensis 76_1.0 - Chinese soft-shelled turtle
NoYes   Anolis carolinensis 76_2.0 - Green anole
NoYes   Xenopus laevis - African clawed frog
NoYes   Xenopus tropicalis 76_4.2 - Tropical clawed frog
NoYes   Latimeria chalumnae 76_1 - Coelacanth
NoYes   Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) - Tropical clawed frog
NoYes   Homo sapiens 69_37 - Human
NoYes   Pan troglodytes 69_2.1.4 - Chimpanzee
NoYes   Gorilla gorilla 69_3.1 - Western gorilla
NoYes   Pongo abelii 69_2 - Sumatran orangutan
NoYes   Nomascus leucogenys 69_1.0 - Northern white-cheeked gibbon
NoYes   Macaca mulatta 69_1 - Rhesus monkey
NoYes   Callithrix jacchus 69_3.2.1 - White-tufted-ear marmoset
NoYes   Otolemur garnettii 69_3 - Small-eared galago
NoYes   Tarsius syrichta 69_1
NoYes   Microcebus murinus 69_1 - Gray mouse lemur
NoYes   Rattus norvegicus 69_3.4 - Norway rat
NoYes   Mus musculus 69_38 - House mouse
NoYes   Dipodomys ordii 69_1 - Ord's kangaroo rat
NoYes   Ictidomys tridecemlineatus 69_2 - Thirteen-lined ground squirrel
NoYes   Cavia porcellus 69_3 - Domestic guinea pig
NoYes   Oryctolagus cuniculus 69_2 - Rabbit
NoYes   Ochotona princeps 69 - American pika
NoYes   Tupaia belangeri 69 - Northern tree shrew
NoYes   Sus scrofa 69_10.2 - Pig
NoYes   Bos taurus 69_3.1 - Cattle
NoYes   Vicugna pacos 69_1 - Alpaca
NoYes   Tursiops truncatus 69_1 - Bottlenose dolphin
NoYes   Mustela putorius furo 69_1.0 - Domestic ferret
NoYes   Ailuropoda melanoleuca 69_1 - Giant panda
NoYes   Canis familiaris 69_3.1 - Dog
NoYes   Felis catus 69 - Domestic cat
NoYes   Equus caballus 69_2 - Horse
NoYes   Myotis lucifugus 69_2.0 - Little brown bat
NoYes   Pteropus vampyrus 69_1 - Large flying fox
NoYes   Sorex araneus 69_1 - European shrew
NoYes   Erinaceus europaeus 69 - Western European hedgehog
NoYes   Procavia capensis 69_1 - Cape rock hyrax
NoYes   Loxodonta africana 69_3 - African savanna elephant
NoYes   Echinops telfairi 69 - Small Madagascar hedgehog
NoYes   Dasypus novemcinctus 69_2 - Nine-banded armadillo
NoYes   Choloepus hoffmanni 69_1 - Hoffmann's two-fingered sloth
NoYes   Macropus eugenii 69_1.0 - Tammar wallaby
NoYes   Sarcophilus harrisii 69_7.0 - Tasmanian devil
NoYes   Monodelphis domestica 69_5 - Gray short-tailed opossum
NoYes   Ornithorhynchus anatinus 69_5 - Platypus
NoYes   Meleagris gallopavo 69_2 - Turkey
NoYes   Gallus gallus 69_2 - Chicken
NoYes   Taeniopygia guttata 69_3.2.4 - Zebra finch
NoYes   Pelodiscus sinensis 69_1.0 - Chinese soft-shelled turtle
NoYes   Anolis carolinensis 69_2.0 - Green anole
NoYes   Xenopus tropicalis 69_4.2 - Tropical clawed frog
NoYes   Latimeria chalumnae 69_1 - Coelacanth
NoYes   Homo sapiens 75_37 - Human
NoYes   Homo sapiens - Human
NoYes   Mus musculus 63_37 (longest transcript per gene) - House mouse
NoYes   NCBI 2017_08 genome
NoYes   STRING v9.0.5 (STRING)
NoYes   Uniprot 2018_03 genome
NoYes   Global Ocean Sampling Expedition (GOS)
NoYes   PDB chains (SCOP 1.75) (PDB)
NoYes   Protein Data Bank (all PDB sequenc)
NoYes   SCOP2 SCOPe CATH ECOD (all domain sequ)
NoYes   TargetDB (Targets)
NoYes   ALL (only advised for small superfamilies)


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