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Home > Genomes > Ictidomys tridecemlineatus 76_2 > Cgl1923-like alignments

Cgl1923-like alignments in Ictidomys tridecemlineatus 76_2

These alignments are sequences aligned to the 0054480 model.

Sophisticated options are available for refining alignments:

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Alignments

The numbers along the top are the segment numbers of the HMM states, and each sequence is seperately aligned to the model.
The first sequence is the seed the model was built from.
Upper case letters are aligned, lower case letters are insertions, '-' signifies a deletion and '.' is nothing.

                                10        20        30        40        50        60        70      
                                 |         |         |         |         |         |         |      
d2p90a1               dr--MYELEYPSPEVSGQTAGGPTLIVALQGYADAGHAVESSSSHLMDALDHRLIASFNNDELIDYRSRRPVVVIEHN
ENSSTOP00000002018  ..--------------------------FQPAVSVGNVGQLAIDLIISTLNMRKIGYFYTDCLVPIVGNNPYATEEDN


                        80        90        100       110       120       130       140       150   
                         |         |          |         |         |         |         |         |   
d2p90a1               EVTSMDELNLGLHVVRDND.NKPFLMLSGPEPDLRWGDFSNAVVDLVEKFGVENTICLYAAPMTVPHTRPTVVTAHGN
ENSSTOP00000002018  STEL--STNAEVYS--LPSkKLVALQLRSIFIKYKSKSFCEKLLSWVQSSGCAKVIVLSS------------------


                          160       170       180       190       200       210       220       230 
                            |         |         |         |         |         |         |         | 
d2p90a1               STDRLKDQVSLDTRMTVPGSASLMLEKLLKDKGKNVSGYTVHVPHYVSASPYPAATLKLLQSIADSADLNLPLLALER
ENSSTOP00000002018  ------------------------------------------------------------------------------


                            240       250       260           
                              |         |         |           
d2p90a1               DAEKVHRQLMEQTEESSEIQRVVGALEQQYDSELER--yr
ENSSTOP00000002018  --------------------------------------th


Statistics on alignment.	Save alignment.

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Refine alignments

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Add your sequences to the alignment:

Members of the same:	including
Include all superfamily members:	, or just those assigned by the selected model:
Initial T99 seed sequence:	NoYes

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Model: 0054480 (list models)

Initial SAMT99 seed:
Alignment:

Display Options:

Output in FASTA-like format:	NoYes
Output column indices:	NoYes
Sequence index (number) on each line:	NoYes

Max number of insertions shown:	(0 does not show insertions)
Characters per line:
Character to show inserts:
Maximum number of sequences:
Exclude sequences shorter than:	residues

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Add alignments from genomes

Select below additional genomes you would like to see alignments for, then click on 'Re-Submit'. The genome assignments will be added to this page.

Select to display	Genome
NoYes	Homo sapiens 76_38 - Human
NoYes	Gorilla gorilla 76_3.1 - Western gorilla
NoYes	Pongo abelii 76_2 - Sumatran orangutan
NoYes	Nomascus leucogenys 76_1.0 - Northern white-cheeked gibbon
NoYes	Papio anubis 76 - Olive baboon
NoYes	Macaca mulatta 76_1 - Rhesus monkey
NoYes	Callithrix jacchus 76_3.2.1 - White-tufted-ear marmoset
NoYes	Rattus norvegicus 76_5.0 - Norway rat
NoYes	Mus musculus 76_38 - House mouse
NoYes	Dipodomys ordii 76_1 - Ord's kangaroo rat
NoYes	Ictidomys tridecemlineatus 76_2 - Thirteen-lined ground squirrel
NoYes	Cavia porcellus 76_3 - Domestic guinea pig
NoYes	Oryctolagus cuniculus 76_2 - Rabbit
NoYes	Ochotona princeps 76 - American pika
NoYes	Sus scrofa 76_10.2 - Pig
NoYes	Bos taurus 76_3.1 - Cattle
NoYes	Tursiops truncatus 76_1 - Bottlenose dolphin
NoYes	Mustela putorius furo 76_1.0 - Domestic ferret
NoYes	Ailuropoda melanoleuca 76_1 - Giant panda
NoYes	Canis familiaris 76_3.1 - Dog
NoYes	Felis catus 76_6.2 - Domestic cat
NoYes	Equus caballus 76_2 - Horse
NoYes	Myotis lucifugus 76_2.0 - Little brown bat
NoYes	Sorex araneus 76_1 - European shrew
NoYes	Loxodonta africana 76_3 - African savanna elephant
NoYes	Echinops telfairi 76 - Small Madagascar hedgehog
NoYes	Dasypus novemcinctus 76_2 - Nine-banded armadillo
NoYes	Choloepus hoffmanni 76_1 - Hoffmann's two-fingered sloth
NoYes	Macropus eugenii 76_1.0 - Tammar wallaby
NoYes	Sarcophilus harrisii 76_7.0 - Tasmanian devil
NoYes	Monodelphis domestica 76_5 - Gray short-tailed opossum
NoYes	Ornithorhynchus anatinus 76_5 - Platypus
NoYes	Saccoglossus kowalevskii v3.0
NoYes	Meleagris gallopavo 76_2 - Turkey
NoYes	Gallus gallus 76_4 - Chicken
NoYes	Anas platyrhynchos 76_1.0 - Mallard
NoYes	Taeniopygia guttata 76_3.2.4 - Zebra finch
NoYes	Ficedula albicollis 76_1.0 - Collared flycatcher
NoYes	Pelodiscus sinensis 76_1.0 - Chinese soft-shelled turtle
NoYes	Anolis carolinensis 76_2.0 - Green anole
NoYes	Xenopus laevis - African clawed frog
NoYes	Xenopus tropicalis 76_4.2 - Tropical clawed frog
NoYes	Lepisosteus oculatus 76 - Spotted gar
NoYes	Gadus morhua 76_1 - Atlantic cod
NoYes	Tetraodon nigroviridis 76_8 - Spotted green pufferfish
NoYes	Takifugu rubripes 76_4 - Torafugu
NoYes	Gasterosteus aculeatus 76_1 - Three-spined stickleback
NoYes	Oryzias latipes 76_1 - Japanese medaka
NoYes	Xiphophorus maculatus 76_4.4.2 - Southern platyfish
NoYes	Poecilia formosa 76 - Amazon molly
NoYes	Oreochromis niloticus 76_1.0 - Nile tilapia
NoYes	Astyanax mexicanus 76 - Mexican tetra
NoYes	Danio rerio 76_9 - Zebrafish
NoYes	Oikopleura dioica
NoYes	Ciona savignyi 76_2.0 - Pacific transparent sea squirt
NoYes	Octopus bimaculoides 280
NoYes	Lottia gigantea - Owl limpet
NoYes	Helobdella robusta
NoYes	Capitella sp. I
NoYes	Aedes aegypti 55 - Yellow fever mosquito
NoYes	Culex pipiens quinquefasciatus - Southern house mosquito
NoYes	Anopheles darlingi 22 - American malaria mosquito
NoYes	Rhodnius prolixus 22
NoYes	Ixodes scapularis - Black-legged tick
NoYes	Hymenolepis microstoma
NoYes	Echinococcus multilocularis
NoYes	Echinococcus granulosus
NoYes	Taenia solium - Pork tapeworm
NoYes	Sphaeroforma arctica JP610
NoYes	Cronartium quercuum f. sp. fusiforme G11 v1.0
NoYes	Wallemia sebi v1.0
NoYes	Sphaerobolus stellatus v1.0
NoYes	Piloderma croceum F 1598 v1.0
NoYes	Serpula lacrymans var. lacrymans S7.9
NoYes	Hydnomerulius pinastri v2.0
NoYes	Paxillus rubicundulus Ve08.2h10 v1.0
NoYes	Pisolithus microcarpus 441 v1.0
NoYes	Pisolithus tinctorius Marx 270 v1.0
NoYes	Scleroderma citrinum Foug A v1.0
NoYes	Coprinopsis cinerea okayama7 130 v3
NoYes	Pleurotus ostreatus - Oyster mushroom
NoYes	Amanita thiersii Skay4041 v1.0
NoYes	Amanita muscaria Koide v1.0 - Fly agaric
NoYes	Galerina marginata v1.0
NoYes	Hebeloma cylindrosporum h7 v2.0
NoYes	Laccaria bicolor S238N-H82
NoYes	Schizophyllum commune
NoYes	Stereum hirsutum FP-91666 SS1 v1.0
NoYes	Heterobasidion annosum
NoYes	Gloeophyllum trabeumv1.0
NoYes	Sebacina vermifera MAFF 305830 v1.0
NoYes	Fomitiporia mediterranea v1.0
NoYes	Tulasnella calospora AL13/4D v1.0
NoYes	Babjeviella inositovora NRRL Y-12698 v1.0
NoYes	Metschnikowia bicuspidata NRRL YB-4993 v1.0
NoYes	Spizellomyces punctatus DAOM BR117
NoYes	Entamoeba invadens 1.2
NoYes	Entamoeba histolytica 1
NoYes	Selaginella moellendorffii
NoYes	Theobroma cacao B97-61/B2 v1 - Cacao
NoYes	Citrus clementina v165
NoYes	Citrus sinensis v154 - Sweet orange
NoYes	Thellungiella halophila v173
NoYes	Brassica rapa Chiifu-401 1.2 - Field mustard
NoYes	Capsella rubella v183
NoYes	Arabidopsis lyrata - Lyrate rockcress
NoYes	Arabidopsis thaliana 10 - Thale cress
NoYes	Medicago truncatula - Barrel medic
NoYes	Fragaria vesca - Wild strawberry
NoYes	Malus domestica v196 - Apple
NoYes	Prunus persica v139 - Peach
NoYes	Populus trichocarpa v156 - Black cottonwood
NoYes	Solanum lycopersicum v.2.3 - Tomato
NoYes	Solanum tuberosum - Potato
NoYes	Aquilegia coerulea v195
NoYes	Zea mays subsp. mays - Maize
NoYes	Zea mays v181 - Maize
NoYes	Musa balbisiana - Balbis banana
NoYes	Musa acuminata 22 - Wild Malaysian banana
NoYes	Chlorella variabilis sp. NC64A
NoYes	Volvox carteri f. nagariensis
NoYes	Volvox carteri v199
NoYes	Bigelowiella natans CCMP2755 22
NoYes	Symbiodinium minutum clade B1 v1.2
NoYes	Naegleria gruberi
NoYes	Guillardia theta CCMP2712 v1.0
NoYes	Thermobaculum terrenum ATCC BAA-798
NoYes	Conexibacter woesei DSM 14684
NoYes	Rubrobacter xylanophilus DSM 9941
NoYes	Ilumatobacter coccineus
NoYes	Acidimicrobium ferrooxidans DSM 10331
NoYes	Thermobispora bispora DSM 43833
NoYes	Nakamurella multipartita DSM 44233
NoYes	Acidothermus cellulolyticus 11B
NoYes	Modestobacter marinus
NoYes	Blastococcus saxobsidens DD2
NoYes	Geodermatophilus obscurus DSM 43160
NoYes	Kineococcus radiotolerans SRS30216
NoYes	Catenulispora acidiphila DSM 44928
NoYes	Stackebrandtia nassauensis DSM 44728
NoYes	Frankia symbiont of Datisca glomerata
NoYes	Frankia sp. EAN1pec
NoYes	Frankia alni ACN14a
NoYes	Thermobifida fusca YX
NoYes	Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111
NoYes	Thermomonospora curvata DSM 43183
NoYes	Streptosporangium roseum DSM 43021
NoYes	Kitasatospora setae KM-6054
NoYes	Streptomyces coelicolor A3(2)
NoYes	Streptomyces sp. PAMC26508
NoYes	Streptomyces flavogriseus ATCC 33331
NoYes	Streptomyces sp. SirexAA-E
NoYes	Streptomyces griseus subsp. griseus NBRC 13350
NoYes	Streptomyces bingchenggensis BCW-1
NoYes	Streptomyces violaceusniger Tu 4113
NoYes	Streptomyces avermitilis MA-4680
NoYes	Streptomyces cattleya NRRL 8057 = DSM 46488
NoYes	Streptomyces scabiei 87.22
NoYes	Streptomyces hygroscopicus subsp. jinggangensis 5008
NoYes	Actinosynnema mirum DSM 43827
NoYes	Saccharomonospora viridis DSM 43017
NoYes	Pseudonocardia dioxanivorans CB1190
NoYes	Saccharopolyspora erythraea NRRL 2338
NoYes	Amycolatopsis mediterranei U32
NoYes	Kribbella flavida DSM 17836
NoYes	Nocardioides sp. JS614
NoYes	Propionibacterium propionicum F0230a
NoYes	Propionibacterium acnes SK137
NoYes	Microlunatus phosphovorus NM-1
NoYes	Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
NoYes	Salinispora arenicola CNS-205
NoYes	Salinispora tropica CNB-440
NoYes	Verrucosispora maris AB-18-032
NoYes	Micromonospora sp. L5
NoYes	Micromonospora aurantiaca ATCC 27029
NoYes	Actinoplanes sp. N902-109
NoYes	Actinoplanes sp. SE50/110
NoYes	Actinoplanes missouriensis 431
NoYes	Segniliparus rotundus DSM 44985
NoYes	Tsukamurella paurometabola DSM 20162
NoYes	Gordonia sp. KTR9
NoYes	Gordonia polyisoprenivorans VH2
NoYes	Gordonia bronchialis DSM 43247
NoYes	Rhodococcus jostii RHA1
NoYes	Rhodococcus equi 103S
NoYes	Rhodococcus opacus B4
NoYes	Rhodococcus erythropolis PR4
NoYes	Nocardia cyriacigeorgica GUH-2
NoYes	Nocardia farcinica IFM 10152
NoYes	Amycolicicoccus subflavus DQS3-9A1
NoYes	Mycobacterium abscessus ATCC 19977
NoYes	Mycobacterium sp. JLS
NoYes	Mycobacterium intracellulare ATCC 13950
NoYes	Mycobacterium avium 104
NoYes	Mycobacterium vanbaalenii PYR-1
NoYes	Mycobacterium canettii CIPT 140010059
NoYes	Mycobacterium africanum GM041182
NoYes	Mycobacterium tuberculosis KZN 1435
NoYes	Mycobacterium tuberculosis
NoYes	Mycobacterium bovis BCG str. Pasteur 1173P2
NoYes	Mycobacterium rhodesiae NBB3
NoYes	Mycobacterium ulcerans Agy99
NoYes	Mycobacterium gilvum PYR-GCK
NoYes	Mycobacterium chubuense NBB4
NoYes	Mycobacterium marinum M
NoYes	Mycobacterium smegmatis str. MC2 155
NoYes	Mycobacterium leprae Br4923
NoYes	Corynebacterium resistens DSM 45100
NoYes	Corynebacterium aurimucosum ATCC 700975
NoYes	Corynebacterium kroppenstedtii DSM 44385
NoYes	Corynebacterium efficiens YS-314
NoYes	Corynebacterium ulcerans 0102
NoYes	Corynebacterium urealyticum DSM 7109
NoYes	Corynebacterium jeikeium K411
NoYes	Corynebacterium variabile DSM 44702
NoYes	Corynebacterium pseudotuberculosis 316
NoYes	Corynebacterium glutamicum R
NoYes	Corynebacterium diphtheriae NCTC 13129
NoYes	Tropheryma whipplei TW08/27
NoYes	Sanguibacter keddieii DSM 10542
NoYes	Kytococcus sedentarius DSM 20547
NoYes	Beutenbergia cavernae DSM 12333
NoYes	Leifsonia xyli subsp. xyli str. CTCB07
NoYes	Microbacterium testaceum StLB037
NoYes	Clavibacter michiganensis subsp. michiganensis NCPPB 382
NoYes	Jonesia denitrificans DSM 20603
NoYes	Intrasporangium calvum DSM 43043
NoYes	Brachybacterium faecium DSM 4810
NoYes	Isoptericola variabilis 225
NoYes	Xylanimonas cellulosilytica DSM 15894
NoYes	Cellulomonas flavigena DSM 20109
NoYes	Cellulomonas fimi ATCC 484
NoYes	[Cellvibrio] gilvus ATCC 13127
NoYes	Arthrobacter phenanthrenivorans Sphe3
NoYes	Arthrobacter chlorophenolicus A6
NoYes	Arthrobacter aurescens TC1
NoYes	Arthrobacter arilaitensis Re117
NoYes	Kocuria rhizophila DC2201
NoYes	Rothia mucilaginosa DY-18
NoYes	Rothia dentocariosa ATCC 17931
NoYes	Arthrobacter sp. Rue61a
NoYes	Arthrobacter sp. FB24
NoYes	Renibacterium salmoninarum ATCC 33209
NoYes	Micrococcus luteus NCTC 2665
NoYes	Bifidobacterium longum subsp. longum JDM301
NoYes	Bifidobacterium animalis subsp. lactis Bl-04
NoYes	Bifidobacterium dentium Bd1
NoYes	Bifidobacterium breve ACS-071-V-Sch8b
NoYes	Bifidobacterium bifidum S17
NoYes	Bifidobacterium adolescentis ATCC 15703
NoYes	Arcanobacterium haemolyticum DSM 20595
NoYes	Mobiluncus curtisii ATCC 43063
NoYes	Actinomyces sp. F0330
NoYes	Dehalococcoides ethenogenes 195
NoYes	Dehalococcoides sp. BAV1
NoYes	Dehalogenimonas lykanthroporepellens BL-DC-9
NoYes	Anaerolinea thermophila UNI-1
NoYes	Desulfomonile tiedjei DSM 6799
NoYes	Syntrophobacter fumaroxidans MPOB
NoYes	Candidatus Caldiarchaeum subterraneum
NoYes	Cenarchaeum symbiosum A
NoYes	Candidatus Nitrosopumilus sp. AR2
NoYes	Nitrosopumilus maritimus SCM1
NoYes	Candidatus Korarchaeum cryptofilum OPF8
NoYes	Acidilobus saccharovorans 345-15
NoYes	Fervidicoccus fontis Kam940
NoYes	Pyrolobus fumarii 1A
NoYes	Hyperthermus butylicus DSM 5456
NoYes	Thermogladius cellulolyticus 1633
NoYes	Ignisphaera aggregans DSM 17230
NoYes	Aeropyrum pernix K1
NoYes	Ignicoccus hospitalis KIN4/I
NoYes	Thermosphaera aggregans DSM 11486
NoYes	Staphylothermus hellenicus DSM 12710
NoYes	Staphylothermus marinus F1
NoYes	Desulfurococcus fermentans DSM 16532
NoYes	Desulfurococcus kamchatkensis 1221n
NoYes	Desulfurococcus mucosus DSM 2162
NoYes	Metallosphaera cuprina Ar-4
NoYes	Metallosphaera sedula DSM 5348
NoYes	Acidianus hospitalis W1
NoYes	Sulfolobus tokodaii str. 7
NoYes	Sulfolobus islandicus Y.N.15.51
NoYes	Sulfolobus solfataricus P2
NoYes	Sulfolobus acidocaldarius DSM 639
NoYes	Thermofilum sp. 1910b
NoYes	Thermofilum pendens Hrk 5
NoYes	Vulcanisaeta moutnovskia 768-28
NoYes	Vulcanisaeta distributa DSM 14429
NoYes	Caldivirga maquilingensis IC-167
NoYes	Pyrobaculum sp. 1860
NoYes	Pyrobaculum calidifontis JCM 11548
NoYes	Pyrobaculum arsenaticum DSM 13514
NoYes	Pyrobaculum oguniense TE7
NoYes	Thermoproteus neutrophilus V24Sta
NoYes	Pyrobaculum aerophilum str. IM2
NoYes	Pyrobaculum islandicum DSM 4184
NoYes	Thermoproteus uzoniensis 768-20
NoYes	Thermoproteus tenax Kra 1
NoYes	halophilic archaeon DL31
NoYes	Methanocella arvoryzae MRE50
NoYes	Methanocella conradii HZ254
NoYes	Methanocella paludicola SANAE
NoYes	Methanosaeta harundinacea 6Ac
NoYes	Methanosaeta thermophila PT
NoYes	Methanosaeta concilii GP6
NoYes	Methanosalsum zhilinae DSM 4017
NoYes	Methanohalobium evestigatum Z-7303
NoYes	Methanococcoides burtonii DSM 6242
NoYes	Methanosarcina acetivorans C2A
NoYes	Methanosarcina mazei Go1
NoYes	Methanosarcina barkeri str. Fusaro
NoYes	Methanohalophilus mahii DSM 5219
NoYes	Methanosphaerula palustris E1-9c
NoYes	Methanoregula boonei 6A8
NoYes	Methanospirillum hungatei JF-1
NoYes	Methanocorpusculum labreanum Z
NoYes	Methanoplanus petrolearius DSM 11571
NoYes	Methanoculleus bourgensis MS2
NoYes	Methanoculleus marisnigri JR1
NoYes	Methanopyrus kandleri AV19
NoYes	Ferroglobus placidus DSM 10642
NoYes	Archaeoglobus profundus DSM 5631
NoYes	Archaeoglobus veneficus SNP6
NoYes	Archaeoglobus fulgidus DSM 4304
NoYes	Thermococcus sp. 4557
NoYes	Thermococcus onnurineus NA1
NoYes	Thermococcus kodakarensis KOD1
NoYes	Thermococcus gammatolerans EJ3
NoYes	Thermococcus sibiricus MM 739
NoYes	Thermococcus barophilus MP
NoYes	Pyrococcus sp. ST04
NoYes	Pyrococcus yayanosii CH1
NoYes	Pyrococcus horikoshii OT3
NoYes	Pyrococcus abyssi GE5
NoYes	Pyrococcus furiosus COM1
NoYes	Thermoplasmatales archaeon BRNA1
NoYes	Thermoplasma volcanium GSS1
NoYes	Thermoplasma acidophilum DSM 1728
NoYes	Picrophilus torridus DSM 9790
NoYes	Salinarchaeum sp. Harcht-Bsk1
NoYes	Halopiger xanaduensis SH-6
NoYes	Methanobacterium sp. AL-21
NoYes	Haloterrigena turkmenica DSM 5511
NoYes	Natrinema sp. J7-2
NoYes	Natrialba magadii ATCC 43099
NoYes	Halorubrum lacusprofundi ATCC 49239
NoYes	Haloquadratum walsbyi DSM 16790
NoYes	Halogeometricum borinquense DSM 11551
NoYes	Haloferax mediterranei ATCC 33500
NoYes	Haloferax volcanii DS2
NoYes	Halomicrobium mukohataei DSM 12286
NoYes	Halorhabdus utahensis DSM 12940
NoYes	Natronomonas pharaonis DSM 2160
NoYes	Haloarcula hispanica ATCC 33960
NoYes	Haloarcula marismortui ATCC 43049
NoYes	Halalkalicoccus jeotgali B3
NoYes	Halobacterium salinarum R1
NoYes	Halobacterium sp. NRC-1
NoYes	Methanotorris igneus Kol 5
NoYes	Methanocaldococcus sp. FS406-22
NoYes	Methanocaldococcus fervens AG86
NoYes	Methanocaldococcus vulcanius M7
NoYes	methanocaldococcus infernus ME
NoYes	Methanocaldococcus jannaschii DSM 2661
NoYes	Methanothermococcus okinawensis IH1
NoYes	Methanococcus aeolicus Nankai-3
NoYes	Methanococcus maripaludis C5
NoYes	Methanococcus voltae A3
NoYes	Methanococcus vannielii SB
NoYes	Methanothermus fervidus DSM 2088
NoYes	Methanothermobacter marburgensis str. Marburg
NoYes	Methanothermobacter thermautotrophicus str. Delta H
NoYes	Methanosphaera stadtmanae DSM 3091
NoYes	Methanobrevibacter sp. AbM4
NoYes	Methanobrevibacter ruminantium M1
NoYes	Methanobrevibacter smithii ATCC 35061
NoYes	Complete genome sequence of Methanobacterium sp. Mb1
NoYes	Aciduliprofundum sp. MAR08-339
NoYes	Aciduliprofundum boonei T469
NoYes	Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) - Tropical clawed frog
NoYes	Frankia sp. EuI1c
NoYes	Frankia sp. CcI3
NoYes	Nocardiopsis alba ATCC BAA-2165
NoYes	Streptomyces albus J1074
NoYes	Streptomyces rapamycinicus NRRL 5491
NoYes	Streptomyces davawensis JCM 4913
NoYes	Streptomyces fulvissimus DSM 40593
NoYes	Streptomyces venezuelae ATCC 10712
NoYes	Streptomyces collinus Tu 365
NoYes	Streptomyces cattleya NRRL 8057 = DSM 46488
NoYes	Streptomyces hygroscopicus subsp. jinggangensis TL01
NoYes	Saccharothrix espanaensis DSM 44229
NoYes	Amycolatopsis mediterranei RB
NoYes	Amycolatopsis mediterranei S699
NoYes	Amycolatopsis mediterranei S699
NoYes	Amycolatopsis orientalis HCCB10007
NoYes	Propionibacterium avidum 44067
NoYes	Propionibacterium acnes ATCC 11828
NoYes	Propionibacterium acnes TypeIA2 P.acn31
NoYes	Propionibacterium acnes TypeIA2 P.acn17
NoYes	Propionibacterium acnes TypeIA2 P.acn33
NoYes	Propionibacterium acnes C1
NoYes	Propionibacterium acnes HL096PA1
NoYes	Propionibacterium acnes 6609
NoYes	Propionibacterium acnes 266
NoYes	Propionibacterium acnes KPA171202
NoYes	Propionibacterium acidipropionici ATCC 4875
NoYes	Actinoplanes friuliensis DSM 7358
NoYes	Rhodococcus pyridinivorans SB3094
NoYes	Rhodococcus erythropolis CCM2595
NoYes	Nocardia brasiliensis ATCC 700358
NoYes	Mycobacterium sp. MOTT36Y
NoYes	Mycobacterium sp. JDM601
NoYes	Mycobacterium abscessus subsp. bolletii 50594
NoYes	Mycobacterium liflandii 128FXT
NoYes	Mycobacterium sp. KMS
NoYes	Mycobacterium sp. MCS
NoYes	Mycobacterium yongonense 05-1390
NoYes	Mycobacterium intracellulare MOTT-64
NoYes	Mycobacterium indicus pranii MTCC 9506
NoYes	Mycobacterium intracellulare MOTT-02
NoYes	Mycobacterium avium subsp. paratuberculosis MAP4
NoYes	Mycobacterium avium subsp. paratuberculosis K-10
NoYes	Mycobacterium canettii CIPT 140070017
NoYes	Mycobacterium canettii CIPT 140060008
NoYes	Mycobacterium canettii CIPT 140070008
NoYes	Mycobacterium canettii CIPT 140070010
NoYes	Mycobacterium tuberculosis EAI5/NITR206
NoYes	Mycobacterium tuberculosis EAI5
NoYes	Mycobacterium tuberculosis CAS/NITR204
NoYes	Mycobacterium tuberculosis str. Beijing/NITR203
NoYes	Mycobacterium tuberculosis UT205
NoYes	Mycobacterium tuberculosis RGTB423
NoYes	Mycobacterium tuberculosis RGTB327
NoYes	Mycobacterium tuberculosis CTRI-2
NoYes	Mycobacterium tuberculosis str. Erdman = ATCC 35801
NoYes	Mycobacterium tuberculosis KZN 605
NoYes	Mycobacterium tuberculosis KZN 4207
NoYes	Mycobacterium tuberculosis CCDC5180
NoYes	Mycobacterium tuberculosis CCDC5079
NoYes	Mycobacterium tuberculosis CCDC5079
NoYes	Mycobacterium tuberculosis H37Ra
NoYes	Mycobacterium tuberculosis str. Haarlem/NITR202
NoYes	Mycobacterium tuberculosis str. Haarlem
NoYes	Mycobacterium tuberculosis F11
NoYes	Mycobacterium tuberculosis H37Rv
NoYes	Mycobacterium tuberculosis CDC1551
NoYes	Mycobacterium bovis AF2122/97
NoYes	Mycobacterium bovis BCG str. Korea 1168P
NoYes	Mycobacterium bovis BCG str. Mexico
NoYes	Mycobacterium bovis BCG str. Tokyo 172
NoYes	Mycobacterium gilvum Spyr1
NoYes	Mycobacterium smegmatis str. MC2 155
NoYes	Mycobacterium leprae TN
NoYes	Mycobacterium kansasii ATCC 12478
NoYes	Mycobacterium smegmatis JS623
NoYes	Corynebacterium maris DSM 45190
NoYes	Corynebacterium halotolerans YIM 70093 = DSM 44683
NoYes	Corynebacterium terpenotabidum Y-11
NoYes	Corynebacterium ulcerans BR-AD22
NoYes	Corynebacterium ulcerans 809
NoYes	Corynebacterium urealyticum DSM 7111
NoYes	Corynebacterium argentoratense DSM 44202
NoYes	Corynebacterium callunae DSM 20147
NoYes	Corynebacterium pseudotuberculosis 258
NoYes	Corynebacterium pseudotuberculosis Cp162
NoYes	Corynebacterium pseudotuberculosis P54B96
NoYes	Corynebacterium pseudotuberculosis 267
NoYes	Corynebacterium pseudotuberculosis 1/06-A
NoYes	Corynebacterium pseudotuberculosis 42/02-A
NoYes	Corynebacterium pseudotuberculosis 3/99-5
NoYes	Corynebacterium pseudotuberculosis 31
NoYes	Corynebacterium pseudotuberculosis CIP 52.97
NoYes	Corynebacterium pseudotuberculosis PAT10
NoYes	Corynebacterium pseudotuberculosis I19
NoYes	Corynebacterium pseudotuberculosis FRC41
NoYes	Corynebacterium pseudotuberculosis C231
NoYes	Corynebacterium pseudotuberculosis 1002
NoYes	Corynebacterium glutamicum MB001
NoYes	Corynebacterium glutamicum SCgG2
NoYes	Corynebacterium glutamicum SCgG1
NoYes	Corynebacterium glutamicum ATCC 13032
NoYes	Corynebacterium glutamicum ATCC 13032
NoYes	Corynebacterium glutamicum ATCC 13032
NoYes	Corynebacterium diphtheriae BH8
NoYes	Corynebacterium diphtheriae INCA 402
NoYes	Corynebacterium diphtheriae VA01
NoYes	Corynebacterium diphtheriae HC04
NoYes	Corynebacterium diphtheriae HC03
NoYes	Corynebacterium diphtheriae HC02
NoYes	Corynebacterium diphtheriae HC01
NoYes	Corynebacterium diphtheriae 241
NoYes	Corynebacterium diphtheriae CDCE 8392
NoYes	Corynebacterium diphtheriae PW8
NoYes	Corynebacterium diphtheriae C7 (beta)
NoYes	Corynebacterium diphtheriae 31A
NoYes	Tropheryma whipplei str. Twist
NoYes	Leifsonia xyli subsp. cynodontis DSM 46306
NoYes	Clavibacter michiganensis subsp. sepedonicus
NoYes	Clavibacter michiganensis subsp. nebraskensis NCPPB 2581
NoYes	Bifidobacterium longum NCC2705
NoYes	Bifidobacterium longum DJO10A
NoYes	Bifidobacterium longum subsp. infantis 157F
NoYes	Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222
NoYes	Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222
NoYes	Bifidobacterium longum subsp. longum KACC 91563
NoYes	Bifidobacterium longum subsp. longum BBMN68
NoYes	Bifidobacterium longum subsp. longum F8
NoYes	Bifidobacterium longum subsp. longum JCM 1217
NoYes	Bifidobacterium thermophilum RBL67
NoYes	Bifidobacterium animalis subsp. animalis ATCC 25527
NoYes	Bifidobacterium animalis subsp. lactis Bl12
NoYes	Bifidobacterium animalis subsp. lactis B420
NoYes	Bifidobacterium animalis subsp. lactis ATCC 27673
NoYes	Bifidobacterium animalis subsp. lactis BLC1
NoYes	Bifidobacterium animalis subsp. lactis CNCM I-2494
NoYes	Bifidobacterium animalis subsp. lactis Bi-07
NoYes	Bifidobacterium animalis subsp. lactis V9
NoYes	Bifidobacterium animalis subsp. lactis DSM 10140
NoYes	Bifidobacterium animalis subsp. lactis BB-12
NoYes	Bifidobacterium animalis subsp. lactis AD011
NoYes	Bifidobacterium asteroides PRL2011
NoYes	Bifidobacterium bifidum PRL2010
NoYes	Bifidobacterium bifidum BGN4
NoYes	Actinomyces graevenitzii C83
NoYes	Actinomyces odontolyticus ATCC 17982
NoYes	Actinomyces viscosus C505
NoYes	Dehalococcoides mccartyi GY50
NoYes	Dehalococcoides mccartyi DCMB5
NoYes	Dehalococcoides mccartyi BTF08
NoYes	Dehalococcoides sp. GT
NoYes	Dehalococcoides sp. VS
NoYes	Dehalococcoides sp. CBDB1
NoYes	Paenibacillus mucilaginosus K02
NoYes	Candidatus Nitrososphaera gargensis Ga9.2
NoYes	Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1
NoYes	Caldisphaera lagunensis DSM 15908
NoYes	Aeropyrum camini SY1 = JCM 12091
NoYes	Sulfolobus islandicus LAL14/1
NoYes	Sulfolobus islandicus REY15A
NoYes	Sulfolobus islandicus HVE10/4
NoYes	Sulfolobus islandicus Y.G.57.14
NoYes	Sulfolobus islandicus L.S.2.15
NoYes	Sulfolobus islandicus M.16.27
NoYes	Sulfolobus islandicus M.14.25
NoYes	Sulfolobus islandicus M.16.4
NoYes	Sulfolobus islandicus L.D.8.5
NoYes	Sulfolobus solfataricus 98/2
NoYes	Sulfolobus acidocaldarius SUSAZ
NoYes	Sulfolobus acidocaldarius Ron12/I
NoYes	Sulfolobus acidocaldarius N8
NoYes	Methanomethylovorans hollandica DSM 15978
NoYes	Methanolobus psychrophilus R15
NoYes	Methanosarcina mazei Tuc01
NoYes	Methanoregula formicica Methanoregula formicicum SMSP
NoYes	Archaeoglobus sulfaticallidus PM70-1
NoYes	Thermococcus sp. AM4
NoYes	Thermococcus sp. CL1
NoYes	Thermococcus litoralis DSM 5473
NoYes	Pyrococcus sp. NA2
NoYes	Pyrococcus furiosus DSM 3638
NoYes	Candidatus Methanomethylophilus alvus Mx1201
NoYes	Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1
NoYes	Ferroplasma acidarmanus fer1
NoYes	Halovivax ruber XH-70
NoYes	Natrinema pellirubrum DSM 15624
NoYes	Natronococcus occultus SP4
NoYes	Natronobacterium gregoryi SP2
NoYes	Haloquadratum walsbyi C23
NoYes	Halorhabdus tiamatea SARL4B
NoYes	Natronomonas moolapensis 8.8.11
NoYes	Haloarcula hispanica N601
NoYes	Methanococcus maripaludis X1
NoYes	Methanococcus maripaludis C6
NoYes	Methanococcus maripaludis C7
NoYes	Methanococcus maripaludis S2
NoYes	Methanobacterium sp. SWAN-1
NoYes	Homo sapiens 69_37 - Human
NoYes	Gorilla gorilla 69_3.1 - Western gorilla
NoYes	Pongo abelii 69_2 - Sumatran orangutan
NoYes	Nomascus leucogenys 69_1.0 - Northern white-cheeked gibbon
NoYes	Macaca mulatta 69_1 - Rhesus monkey
NoYes	Callithrix jacchus 69_3.2.1 - White-tufted-ear marmoset
NoYes	Rattus norvegicus 69_3.4 - Norway rat
NoYes	Mus musculus 69_38 - House mouse
NoYes	Dipodomys ordii 69_1 - Ord's kangaroo rat
NoYes	Ictidomys tridecemlineatus 69_2 - Thirteen-lined ground squirrel
NoYes	Cavia porcellus 69_3 - Domestic guinea pig
NoYes	Oryctolagus cuniculus 69_2 - Rabbit
NoYes	Ochotona princeps 69 - American pika
NoYes	Sus scrofa 69_10.2 - Pig
NoYes	Bos taurus 69_3.1 - Cattle
NoYes	Tursiops truncatus 69_1 - Bottlenose dolphin
NoYes	Mustela putorius furo 69_1.0 - Domestic ferret
NoYes	Ailuropoda melanoleuca 69_1 - Giant panda
NoYes	Canis familiaris 69_3.1 - Dog
NoYes	Equus caballus 69_2 - Horse
NoYes	Myotis lucifugus 69_2.0 - Little brown bat
NoYes	Sorex araneus 69_1 - European shrew
NoYes	Loxodonta africana 69_3 - African savanna elephant
NoYes	Echinops telfairi 69 - Small Madagascar hedgehog
NoYes	Dasypus novemcinctus 69_2 - Nine-banded armadillo
NoYes	Choloepus hoffmanni 69_1 - Hoffmann's two-fingered sloth
NoYes	Macropus eugenii 69_1.0 - Tammar wallaby
NoYes	Sarcophilus harrisii 69_7.0 - Tasmanian devil
NoYes	Monodelphis domestica 69_5 - Gray short-tailed opossum
NoYes	Ornithorhynchus anatinus 69_5 - Platypus
NoYes	Meleagris gallopavo 69_2 - Turkey
NoYes	Gallus gallus 69_2 - Chicken
NoYes	Taeniopygia guttata 69_3.2.4 - Zebra finch
NoYes	Pelodiscus sinensis 69_1.0 - Chinese soft-shelled turtle
NoYes	Anolis carolinensis 69_2.0 - Green anole
NoYes	Xenopus tropicalis 69_4.2 - Tropical clawed frog
NoYes	Gadus morhua 69_1 - Atlantic cod
NoYes	Tetraodon nigroviridis 69_8 - Spotted green pufferfish
NoYes	Takifugu rubripes 69_4 - Torafugu
NoYes	Gasterosteus aculeatus 69_1 - Three-spined stickleback
NoYes	Oryzias latipes 69_1 - Japanese medaka
NoYes	Xiphophorus maculatus 69_4.4.2 - Southern platyfish
NoYes	Danio rerio 69_9 - Zebrafish
NoYes	Ciona savignyi 69_2.0 - Pacific transparent sea squirt
NoYes	Arabidopsis thaliana 10 - Thale cress
NoYes	Homo sapiens 75_37 - Human
NoYes	Homo sapiens - Human
NoYes	Mus musculus 63_37 (longest transcript per gene) - House mouse
NoYes	Malus x domestica - Apple
NoYes	Nicotiana benthamiana 0.4.4
NoYes	Solanum pimpinellifolium A-1.0 - Currant tomato
NoYes	Solanum lycopersicum v2.3 - Tomato
NoYes	Mycobacterium tuberculosis H37Rv
NoYes	1_050719N (meta-genome)
NoYes	1_Upper_euphotic (meta-genome)
NoYes	2_050719S (meta-genome)
NoYes	2_Base_of_chrolophyll_max (meta-genome)
NoYes	3_050719R (meta-genome)
NoYes	3_Below_base_of_euphotic (meta-genome)
NoYes	4_050719Q (meta-genome)
NoYes	4_Deep_abyss (meta-genome)
NoYes	5_050719P (meta-genome)
NoYes	5_Below_upper_mesopelagic (meta-genome)
NoYes	6_Upper_euphotic (meta-genome)
NoYes	7_Oxygen_minimum_layer (meta-genome)
NoYes	Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)
NoYes	Air microbial communities Singapore indoor air filters 1 (meta-genome)
NoYes	Air microbial communities Singapore indoor air filters 2 (meta-genome)
NoYes	Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome)
NoYes	Bath Hot Springs, filamentous community (meta-genome)
NoYes	Bath Hot Springs, planktonic community (meta-genome)
NoYes	Dump bottom (Dump bottom) (meta-genome)
NoYes	Dump top (Dump top) (meta-genome)
NoYes	Freshwater propionate enrichment of Brocadia fulgida (meta-genome)
NoYes	Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes
NoYes	Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)
NoYes	Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)
NoYes	Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)
NoYes	Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)
NoYes	Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)
NoYes	Hot Spring microbial communities from Yellowstone Obsidian Hot Spring, Sample 10594 (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)
NoYes	Human Gut Community Subject 7 (meta-genome)
NoYes	Human Gut Community Subject 8 (meta-genome)
NoYes	Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)
NoYes	Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)
NoYes	Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)
NoYes	Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)
NoYes	Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)
NoYes	NCBI 2017_08 genome
NoYes	Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)
NoYes	Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)
NoYes	Protozoadb 2010_08 (Protozoadb)
NoYes	simHC - Simulated High Complexity Metagenome (meta-genome)
NoYes	simLC - Simulated Low Complexity Metagenome (meta-genome)
NoYes	simMC - Simulated Medium Complexity Metagenome (meta-genome)
NoYes	Soil microbial communities from Minnesota Farm (meta-genome)
NoYes	Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)
NoYes	Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)
NoYes	Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)
NoYes	Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)
NoYes	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)
NoYes	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)
NoYes	Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)
NoYes	STRING v9.0.5 (STRING)
NoYes	Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)
NoYes	Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)
NoYes	Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)
NoYes	Uniprot 2018_03 genome
NoYes	Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)
NoYes	Global Ocean Sampling Expedition (GOS)
NoYes	NCBI plasmid sequences (Plasmids)
NoYes	PDB chains (SCOP 1.75) (PDB)
NoYes	Protein Data Bank (all PDB sequenc)
NoYes	SCOP2 SCOPe CATH ECOD (all domain sequ)
NoYes	TargetDB (Targets)
NoYes	ALL (only advised for small superfamilies)

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Cgl1923-like alignments in Ictidomys tridecemlineatus 76_2