SUPERFAMILY 1.75 HMM library and genome assignments server

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SRCR-like alignments in Macaca mulatta 76_1

These alignments are sequences aligned to the 0042161 model.

Sophisticated options are available for refining alignments:


Jump to [ Top of page · Refine alignments · Add alignments from genomes ]

Alignments

The numbers along the top are the segment numbers of the HMM states, and each sequence is seperately aligned to the model.
The first sequence is the seed the model was built from.
Upper case letters are aligned, lower case letters are insertions, '-' signifies a deletion and '.' is nothing.

                                    10              20                  30                  40      
                                     |               |                   |                   |      
d1p57a_               .....p-LYPVQVSSA....D..ARLMVFDKT..E....G....TWRLLCSSR..S........NARVAGLSCEEMGF
ENSMMUP00000027831  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DINDASVVCRQLGC
ENSMMUP00000029108  ..ledk---RLRLVNGdg..R..CAGRVEIYH..N....G....MWGTICDDD..W........DLSDAHVVCRKLGC
ENSMMUP00000040296  ..ledk---RLRLVNGdg..R..CAGRVEIYH..N....G....MWGTICDDD..W........DLSDAHVVCRKLGC
ENSMMUP00000027828  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTNDASVVCRQLGC
ENSMMUP00000027829  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DINDASVVCRQLGC
ENSMMUP00000027826  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DINDASVVCRQLGC
ENSMMUP00000027828  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTNDANVVCRQLGC
ENSMMUP00000027828  .....r---ALRLVNGdg..R..CQGRVEVLY..Q....G....SWGTVCDDS..W........DTNDANVVCRQLGC
ENSMMUP00000027831  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTNDANVVCRQLGC
ENSMMUP00000027826  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTNDANVVCRQLGC
ENSMMUP00000027830  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTNDANVVCRQLGC
ENSMMUP00000027829  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTNDANVVCRQLGC
ENSMMUP00000027826  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTNDASVVCRQLGC
ENSMMUP00000027829  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTNDASVVCRQLGC
ENSMMUP00000027829  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTNDANVVCRQLGC
ENSMMUP00000027826  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDY..W........DTNDANVVCRQLGC
ENSMMUP00000027830  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTNDASVVCRQLGC
ENSMMUP00000027830  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTNDANVVCRQLGC
ENSMMUP00000006821  ..cies--GQLRLVNGgg..R..CAGRVEIYH..E....G....SWGTICDDS..W........DLSDAHVVCRQLGC
ENSMMUP00000027826  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTNDANVVCRQLGC
ENSMMUP00000027831  ....sl---ALRLVNGgd..R..CQGRVEVLY..Q....G....SWGTVCDDY..W........DTNDANVVCRQLGC
ENSMMUP00000027828  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTSDANVVCRQLRC
ENSMMUP00000027830  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DINDASVVCRQLGC
ENSMMUP00000027826  .....l---ALRLVNGdg..R..CQGRVEVLY..Q....G....SWGTVCDDS..W........DTNDANVVCRQLGC
ENSMMUP00000027829  ....sl---ALRLVNGgd..R..CQGRVEVLY..Q....G....SWGTVCDDY..W........DTNDANVVCRQLGC
ENSMMUP00000027830  ....sl---ALRLVNGgd..R..CQGRVEVLY..Q....G....SWGTVCDDY..W........DTNDANVVCRQLGC
ENSMMUP00000027826  ....sl---ALRLVNGgd..R..CQGRVEVLY..Q....G....SWGTVCDDY..W........DTNDANVVCRQLGC
ENSMMUP00000027830  .....a----LRLVNGdg..R..CQGRVEVLY..Q....G....SWGTVCDDS..W........DTNDANVVCRQLGC
ENSMMUP00000027826  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTSDANVVCRQLRC
ENSMMUP00000027829  .....a----LRLVNGdg..R..CQGRVEVLY..Q....G....SWGTVCDDS..W........DTNDANVVCRQLGC
ENSMMUP00000027831  ......----LRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTNDANVVCRQLGC
ENSMMUP00000027829  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTSDANVVCRQLRC
ENSMMUP00000027830  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDS..W........DTSDANVVCRQLRC
ENSMMUP00000027829  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDY..W........DTNDANVVCRQLGC
ENSMMUP00000027830  ....sl---ALRLVNGgd..R..CQGRVEVLY..R....G....SWGTVCDDY..W........DTNDANVVCRQLGC
ENSMMUP00000008356  ...gsl---GVRLAAGpg..R..CAGRVEVLH..G....G....AWGTVCDDA..W........DLQDAHVVCRQLGC
ENSMMUP00000027832  .lrlvn------LNSSyg..L..CAGRVEIYH..G....G....TWGTVCDDS..W........TIHEAEVVCRQLGC
ENSMMUP00000027826  ....sl---ALRLVNGsd..R..CQGRVEVLF..-....G....SWGTVCDDS..W........DTSDANVVCRQLGC
ENSMMUP00000006821  .....l---EMRLTNGgn..K..CSGRIEIKF..Q....G....QWGTVCDDN..F........NIDHASVVCKQLEC
ENSMMUP00000006821  .....k----IRLQEGpt..S..CSGRVEIWH..G....G....SWGTVCDDS..W........DLNDAQVVCQQLGC
ENSMMUP00000027826  .lrlvn------LNSSyg..L..CAGRVEIYH..G....G....TWGTVCDDS..W........TIHEAEVVCRQLGC
ENSMMUP00000029108  .....r----IRVRGGdt..E..CSGRVEIWH..A....G....SWGTVCDDS..W........DLAEAEVVCQQLGC
ENSMMUP00000040296  .....r----IRVRGGdt..E..CSGRVEIWH..A....G....SWGTVCDDS..W........DLAEAEVVCQQLGC
ENSMMUP00000035395  .....p---ELRLVGGps..R..CRGRLEVMH..G....G....SWGSVCDDD..W........DVVDANVVCRQLGC
ENSMMUP00000035395  ....eg---SVRLVGGa...Nl.CQGRVEILH..G....G....LWGTVCDDD..W........GLPDAAVVCRQLGC
ENSMMUP00000020010  ......----IRLVGG....SsvHEGRVELYH..A....G....QWGTICDDQ..W........DDADAEVICRQLGL
ENSMMUP00000024680  ..vdgs---------S....R..CSGRVEILH..Q....G....AWGTVCDDL..W........DLNEAEVVCRQLGC
ENSMMUP00000025835  ....dg---DMRLADGga..T..NQGRVEIFY..R....G....QWGTVCDNL..W........DLTDASVVCRALGF
ENSMMUP00000020010  .....f---PVRLMDGen..K..KEGRVEVFI..N....G....QWGTICDDG..W........TDKDAAVICRQLGY
ENSMMUP00000008356  ....ga----LRVRGGed..R..CSGRVELWH..A....G....SWGTVCDDG..W........DLADAEVVCRQLGC
ENSMMUP00000027830  ....sl---ALRLVNGsd..R..CQGRV----..E....G....SWGTVCDDS..W........DTSDANVVCRQLGC
ENSMMUP00000029035  .....m---MIRLVNGsg..P..HEGRVEVYH..D....R....RWGTVCDDG..W........DKKDGDVVCRMLGF
ENSMMUP00000040296  .....l---DLRLAGAds..P..CYGRLEVKY..Q....G....QWGTVCHDR..W........STRNAAVVCKRLGC
ENSMMUP00000029108  .....l---DLRLAGAds..P..CYGRLEVKY..Q....G....QWGTVCHDR..W........STRNAAVVCKRLGC
ENSMMUP00000009478  .....m---MIRLVNGsg..P..HEGRVEVYH..D....R....RWGTVCDDG..W........DKKDGDVVCRMLGF
ENSMMUP00000006821  .....l---SLRLVDGvt..E..CSGRLEVRF..Q....G....EWGTICDDG..W........DSHDAAVACKQLGC
ENSMMUP00000040296  .....l---ELRLVDGdg..P..CSGRVEVKF..Q....G....QWGTVCDDG..W........NPAASIVVCKQLGC
ENSMMUP00000029108  .....l---ELRLVDGdg..P..CSGRVEVKF..Q....G....QWGTVCDDG..W........NPAASIVVCKQLGC
ENSMMUP00000032218  ....sf--KKVRLVGGsg..P..HEGRVEILH..S....G....QWGTICDDR..W........EVRVGQVICRSLGY
ENSMMUP00000032185  .....i---QLRLAGQkrk.H..SEGRVEVYY..D....G....QWGTVCDDD..F........SIHAAHVVCRELGY
ENSMMUP00000013470  .....t---KLRLVGPesk.P..EEGRLEVLH..Q....G....QWGTVCDDS..F........ALQEATVACRQLGF
ENSMMUP00000021906  .....i---QLRLAGQkrk.H..SEGRVEVYY..D....G....QWGTVCDDD..F........SIHAAHVVCRELGY
ENSMMUP00000032184  .....i---QLRLAGQkrk.H..SEGRVEVYY..D....G....QWGTVCDDD..F........SIHAAHVVCRELGY
ENSMMUP00000032186  .....i---QLRLAGQkrk.H..SEGRVEVYY..D....G....QWGTVCDDD..F........SIHAAHVVCRELGY
ENSMMUP00000006821  .....k---ELRLVDGen..K..CSGRVEVKV..Q....E....EWGTVCNNG..W........SMEAVSVICNQLGC
ENSMMUP00000026080  ..cedp--FDLRLVGG....DklCSGRLEVLH..K....G....VWGSVCDDN..W........GEKEDQVVCKQLDC
ENSMMUP00000027723  ....hp----------....-..AHGRVELYL..G....Q....RWGTVCDDA..W........DLRAAGVLCRQLGC
ENSMMUP00000029108  ....lg----LRLVDGns..S..CSGRVEVKF..Q....E....RWGTICDDG..W........NSNTAAVVCRQLGC
ENSMMUP00000040296  ....lg----LRLVDGns..S..CSGRVEVKF..Q....E....RWGTICDDG..W........NSNTAAVVCRQLGC
ENSMMUP00000035395  ....hp----------....-..AHGRVELYL..G....Q....RWGTVCDDA..W........DLRAAGVLCRQLGC
ENSMMUP00000002850  .....a---RVRLKSGah..P..GEGRVEVLK..A....S....TWGTVCDRK..W........DLHAASVVCRELGF
ENSMMUP00000040296  ....wg----LRLAGGsn..R..CSGRLEVYF..Q....E....QWGTVCDDG..W........NSIAAAVVCSQLDC
ENSMMUP00000029108  ....wg----LRLAGGsn..R..CSGRLEVYF..Q....E....QWGTVCDDG..W........NSIAAAVVCSQLDC
ENSMMUP00000036437  .....r----VRLKSGah..P..GEGRVEVLK..A....S....TWGTVCDRK..W........DLHAASVVCRELGF
ENSMMUP00000020010  ......----IRLAGGkg..S..HEGRLEVYY..R....G....QWGTVCDDG..W........TELNTYVVCRQLGF
ENSMMUP00000006821  ...rep-----RLVGGdi..P..CSGRVEVKH..G....D....TWGSVCDSD..F........SLEAASVLCRELQC
ENSMMUP00000027826  .....v---ALRLVNG....G..DRCQVEVLY..Q....G....SWGTMCDDS..W........DTNDANVVCRQLGC
ENSMMUP00000036437  .....r----FRLAGFprk.P..YEGRVEIQR..A....G....EWGTICDDD..F........TLQAAHVLCRELGF
ENSMMUP00000002850  .....r----FRLAGFprk.P..YEGRVEIQR..A....G....EWGTICDDD..F........TLQAAHVLCRELGF
ENSMMUP00000027829  .....r----------....P..CSGRKSERT..T....G....SWGTVCDDS..W........DTSDANVVCRQLGC
ENSMMUP00000013470  ....ee--LRVRLRSGaq..V..GEGRVEVLV..N....R....QWGTVCDHR..W........NLISASVVCRQLGF
ENSMMUP00000032185  .....l----VRLRGG....AyiGEGRVEVLK..N....G....EWGTVCDDK..W........DLVSASVVCRELGF
ENSMMUP00000029108  ....dl---ELRLVGGtn..R..CVGRVELKI..Q....G....RWGTICHHK..W........NNAAADVVCKQLGC
ENSMMUP00000032184  .....l----VRLRGG....AyiGEGRVEVLK..N....G....EWGTVCDDK..W........DLVSASVVCRELGF
ENSMMUP00000040296  ....dl---ELRLVGGtn..R..CVGRVELKI..Q....G....RWGTICHHK..W........NNAAADVVCKQLGC
ENSMMUP00000032186  .....l----VRLRGG....AyiGEGRVEVLK..N....G....EWGTVCDDK..W........DLVSASVVCRELGF
ENSMMUP00000021906  .....l----VRLRGG....AyiGEGRVEVLK..N....G....EWGTVCDDK..W........DLVSASVVCRELGF
ENSMMUP00000008356  ....pp---EFRLVNGss..S..CEGRVELQV..Q....G....SWAPLCATH..W........DIADATVLCHQLNC
ENSMMUP00000006821  .....y--TEIRLVNGkt..P..CEGRVELKT..L....D....AWGSLCNSH..W........DIEDAHVLCQQLKC
ENSMMUP00000008352  ...pga----LRLAYRhs..T..CDGVVLVRH..H....G....TWGYVCNQE..W........TLAEASVVCRQLGC
ENSMMUP00000026080  ....pp---GVRLVGGlh..R..CEGRVEVRQ..N....G....QWGTVCDDG..W........DIKDVAVVCRELGC
ENSMMUP00000026080  .....n----VRLADGpg..H..CKGRVEVKH..Q....N....RWYSVCQTG..W........SLRAAKVVCRQLGC
ENSMMUP00000003507  ....na--VSVRIVGS....S..NRGRAEVYY..G....G....TWGTICDDE..W........HNSDATVFCRMLGY
ENSMMUP00000000133  ....pp----------....-..-IGRLGVFV..G....G....RWGTVCDDS..W........NINGAAVVCRQLGF
ENSMMUP00000029108  ..hrqp-----RLVGAdm..P..CSGRVEVKR..A....D....TWGSVCDSD..F........SLHAANVLCRELNC
ENSMMUP00000040296  ..hrqp-----RLVGAdm..P..CSGRVEVKR..A....D....TWGSVCDSD..F........SLHAANVLCRELNC
ENSMMUP00000029108  .....l---ELRLADGsd..N..CSGRVEVRI..H....E....QWWTICDQN..W........KNEQALVVCKQLGC
ENSMMUP00000040296  .....l---ELRLADGsd..N..CSGRVEVRI..H....E....QWWTICDQN..W........KNEQALVVCKQLGC
ENSMMUP00000029108  .....m---ELRLVGGss..R..CAGRVEVKV..Q....G....ASGILCANS..W........GINIAEVVCRQLEC
ENSMMUP00000040296  .....m---ELRLVGGss..R..CAGRVEVKV..Q....G....ASGILCANS..W........GINIAEVVCRQLEC
ENSMMUP00000029108  .....y--TDVRLVNGks..Q..CDGQVEIKV..L....G....QWGLLCDTH..W........YPEDAHVLCRQLSC
ENSMMUP00000040296  .....y--TDVRLVNGks..Q..CDGQVEIKV..L....G....QWGLLCDTH..W........YPEDAHVLCRQLSC
ENSMMUP00000008356  .....a----VRLREGqs..R..CDGRVEVSL..E....G....VWGRVLDDA..W........DLRGADVVCRQLGC
ENSMMUP00000006821  .....l---ELRLRGGgs..R..CAGTVEVEI..Q....R....LLGKVCDRG..W........GLKEADVVCRQLGC
ENSMMUP00000020010  ....hg---SVRLRGGkn..E..FEGTVEVYA..S....G....AWGTVCSSH..W........DDSDASVICHQLQL
ENSMMUP00000006821  .....e-FMSLRLTSEasreA..CAGRLEVFY..N....G....AWGSVGRSS..M........SETTVGVVCRQLGC
ENSMMUP00000036437  .....t---RIRLSGGrs..Q..HEGRVEVQI..G....GpgslRWGLICGDD..W........GTLEAMVACRQLGL
ENSMMUP00000032185  .....k----LRLNGGrn..P..YEGRVEVLV..E....RngslVWGMVCGQN..W........GIVEAMVVCRQLGL
ENSMMUP00000002850  .....t---RIRLSGGrs..Q..HEGRVEVQI..G....GpgslRWGLICGDD..W........GTLEAMVACRQLGL
ENSMMUP00000032184  .....k----LRLNGGrn..P..YEGRVEVLV..E....RngslVWGMVCGQN..W........GIVEAMVVCRQLGL
ENSMMUP00000021906  .....k----LRLNGGrn..P..YEGRVEVLV..E....RngslVWGMVCGQN..W........GIVEAMVVCRQLGL
ENSMMUP00000032186  .....k----LRLNGGrn..P..YEGRVEVLV..E....RngslVWGMVCGQN..W........GIVEAMVVCRQLGL
ENSMMUP00000029108  .....a----LRLYSEteveS..CAGRLEVFY..N....G....TWGSVGRRN..I........TTAIAGIVCKQLGC
ENSMMUP00000040296  .....a----LRLYSEteveS..CAGRLEVFY..N....G....TWGSVGRRN..I........TTAIAGIVCKQLGC
ENSMMUP00000013470  .....n---QVRLAGGri..P..EEGLLEVQV..EvngvP....RWGSVCSEN..W........GLTEAMVACRQLGL
ENSMMUP00000002850  .....t----------....-..-EGLVEVRL..P....D....GWSQVCDKG..W........SAHNSHVVCGMLGF
ENSMMUP00000013470  ...spv----------....-..TEGAVEVKY..E....G....HWRQVCDQG..W........TMNNSRVVCGMLGF
ENSMMUP00000027948  gkfsvs------LKHGnt..D..SEGIVEVKLvdQ....D....KAMFVCKSS..W........SMREANVACLDLGF
ENSMMUP00000020105  .....n--RCVRLYGP....N..FILQVYSSQ..R....K....SWHPVCRDD..W........NENYARAACRDMGY
ENSMMUP00000035676  ......EYRCVRVSGR....N..AVLQV--FT..A....A....SWKTMCSDD..W........KGHYANVACAQLGF
ENSMMUP00000036694  .....v---SFRINSE....D..FLLEVQVRD..R....P....RWLLVCHEG..W........SPALGLQVCWSLGY
ENSMMUP00000008352  ....fr---ELRLVQGrs..P..CAGLPEIRN..V....N....GVDRLCGL-..-........HMEEAMVFCRELGC
ENSMMUP00000035677  ......EYRCVRVSGR....N..AVLQV--FT..A....A....SWKTMCSDD..W........KGHYANVACAQLGF
ENSMMUP00000010010  .....l--GCVRFDWD....K..SLLKIYSGS..S....H....QWLPICSSN..W........NDSYSEKTCQQLGF
ENSMMUP00000010011  .....l--GCVRFDWD....K..SLLKIYSGS..S....H....QWLPICSSN..W........NDSYSEKTCQQLGF
ENSMMUP00000035395  ......----------....-..---------..-....-....---------..-........------------GC
ENSMMUP00000019685  ...fqt-----RLTRSns..R..CQGQLEVYI..K....Y....GWHMVCSQS..WgrssnqweDPNQASKVCQRLNC
ENSMMUP00000006441  .....l--YPVQVSSA....D..ARLMVFDKT..E....G....TWRLLCSSR..S........NTRVAGLSCEEMGF
ENSMMUP00000010013  .....a--VAVRLSKD....R..STLQVLDPA..T....G....NWFSACFDN..F........TAALAETACRQMGY
ENSMMUP00000019685  ..qpkv---QSRLVGG....SsiCEGTVEVRQ..G....A....QWAALCDSSsaK........SSLRWEEVCREQQC
ENSMMUP00000032186  .....t----------....-..-EGYVEVKE..G....K....TWKQICDKH..W........TAKNSRVVCGMFGF
ENSMMUP00000021906  .....t----------....-..-EGYVEVKE..G....K....TWKQICDKH..W........TAKNSRVVCGMFGF
ENSMMUP00000023760  ......----------....-..---------..-....-....----MCSDD..W........KGHYANVACAQLGF
ENSMMUP00000003072  .....s----------....-..---------..-....-....---------..-........--------------
ENSMMUP00000013469  ......----------....-..---------..-....-....---------..-........------VVCRQLGL
ENSMMUP00000032184  .....t----------....-..-EGYVEVKE..G....K....TWKQICDKH..W........TAKNSRVVCGMFGF
ENSMMUP00000028788  .ingtt----------....N..NNGLVQFRI..Q....S....LWHTACAEN..W........TTHISNDVCQLLGL
ENSMMUP00000031673  .....e----VQVSSA....D..ARLMVFDKT..E....G....TWRLLCSSR..S........NTRVAGLSCEEMGF
ENSMMUP00000027723  ..vrra----------....-..---------..-....-....---------..-........--------------
ENSMMUP00000028679  .....h----------....-..---------..-....-....---HVCADG..W........QEMFSQLACKQMGL


                        50                     60         70        80                 90           
                         |                      |          |         |                  |           
d1p57a_               LRALTHSELDVR.............TAGAA.GTSGFFCVDEGRLPHTQRLLEV.........ISVCD......CPRGR
ENSMMUP00000027831  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGDESYLWNCphng.....WLSHN......CGHSE
ENSMMUP00000029108  GVALNATV---S.............AHFGA.GSGPIWLDDLNCIGTESHLWQCpsrg.....WGQHD......CRHKE
ENSMMUP00000040296  GVALNATV---S.............AHFGA.GSGPIWLDDLNCIGTESHLWQCpsrg.....WGQHD......CRHKE
ENSMMUP00000027828  GWATSAPG---S.............ARFGQ.GSGPIVLDDVRCSGNESYLWNCphng.....WLSHN......CGHHE
ENSMMUP00000027829  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGDESYLWNCphng.....WLSHN......CGHSE
ENSMMUP00000027826  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGDESYLWNCphng.....WLSHN......CGHSE
ENSMMUP00000027828  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGYESHLWNCphng.....WLSHN......CGHSE
ENSMMUP00000027828  GWAMLAPG---N.............AWFGQ.GSGPIVLDDVRCSGYESYLWSCphng.....WLSHN......CGHSE
ENSMMUP00000027831  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGQESYLWNCphrg.....WLSHN......CGHHE
ENSMMUP00000027826  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGYESHLWNCphng.....WLSHN......CGHSE
ENSMMUP00000027830  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGYESHLWNCphng.....WLSHN......CGHSE
ENSMMUP00000027829  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGYESHLWNCphng.....WLSHN......CGHSE
ENSMMUP00000027826  GWATSAPG---S.............ARFGQ.GSGPIVLDDVRCSGNESYLWNCphng.....WLSHN......CGHHE
ENSMMUP00000027829  GWATSAPG---S.............ARFGQ.GSGPIVLDDVRCSGNESYLWNCphng.....WLSHN......CGHHE
ENSMMUP00000027829  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGQESYLWNCphrg.....WLSHN......CGHHE
ENSMMUP00000027826  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGQESYLWNCphrg.....WLSHN......CGHHE
ENSMMUP00000027830  GWATSAPG---S.............ARFGQ.GSGPIVLDDVRCSGNESYLWNCphng.....WLSHN......CGHHE
ENSMMUP00000027830  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGQESYLWNCphrg.....WLSHN......CGHHE
ENSMMUP00000006821  GEAINATG---S.............AHFGE.GTGPIWLDEMKCNGKESRIWQChshg.....WGQQN......CRHKE
ENSMMUP00000027826  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGQESYLWNCphrg.....WLSHN......CGHHE
ENSMMUP00000027831  GWATSAPG---N.............ARFGQ.GSGPIVLDDMRCSGHESYLWNCphrg.....WLSHN......CGHHE
ENSMMUP00000027828  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGQESYLWSCphng.....WLSHN......CGHSE
ENSMMUP00000027830  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGDESYLWNCphng.....WLSHN......CGHSE
ENSMMUP00000027826  GWAMLAPG---N.............AWFGQ.GSGPIVLDDVRCSGYESYLWSCphng.....WLSHN......CGHSE
ENSMMUP00000027829  GWATSAPG---N.............ARFGQ.GSGPIVLDDMRCSGHESYLWNCphrg.....WLSHN......CGHHE
ENSMMUP00000027830  GWATSAPG---N.............ARFGQ.GSGPIVLDDMRCSGHESYLWNCphrg.....WLSHN......CGHHE
ENSMMUP00000027826  GWATSAPG---N.............ARFGQ.GSGPIVLDDMRCSGHESYLWNCphrg.....WLSHN......CGHHE
ENSMMUP00000027830  GWAMLAPG---N.............AWFGQ.GSGPIVLDDVRCSGYESYLWSCphng.....WLSHN......CGHSE
ENSMMUP00000027826  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGQESYLWSCphng.....WLSHN......CGHSE
ENSMMUP00000027829  GWAMLAPG---N.............AWFGQ.GSGPIVLDDVRCSGYESYLWSCphng.....WLSHN......CGHSE
ENSMMUP00000027831  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGYESHLWNCphng.....WLSHN......CGHSE
ENSMMUP00000027829  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGQESYLWSCphng.....WLSHN......CGHSE
ENSMMUP00000027830  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGQESYLWSCphng.....WLSHN......CGHSE
ENSMMUP00000027829  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGQESYLWNCphrg.....WLSHN......CGHHE
ENSMMUP00000027830  GWATSAPG---N.............ARFGQ.GSGPIVLDDVRCSGQESYLWNCphrg.....WLSHN......CGHHE
ENSMMUP00000008356  GRALSALG---A.............AHFGA.GAGRIWLDELGCQGHESALWQCpsag.....WGQHD......CRHKE
ENSMMUP00000027832  GRAVSALG---N.............AYFGA.GSGPITLDDVECSGSESTLWQCrnrg.....WFSHN......CRHNE
ENSMMUP00000027826  GWATSAPG---N.............ARFGQ.GSGPIVLHDVRCSGHESYLWSCphrg.....WLSHN......CGHHE
ENSMMUP00000006821  GSAVSFSG---S.............ANFGE.GSGPIWFDDLICSGNESALWNCkhqg.....WGKHN......CDHAE
ENSMMUP00000006821  GPALKAFK---E.............AEFGQ.GTGPIWLNEVKCKGNESSLWDCparr.....WGHNE......CGHKE
ENSMMUP00000027826  GRAVSALG---N.............AYFGA.GSGPITLDDVECSGSESTLWQCrnrg.....WFSHN......CRHNE
ENSMMUP00000029108  GSALAALK---E.............ASFGQ.GTGTIWLDEMQCKGNESFLWDChakp.....WGQSD......CGHKE
ENSMMUP00000040296  GSALAALK---E.............ASFGQ.GTGTIWLDEMQCKGNESFLWDChakp.....WGQSD......CGHKE
ENSMMUP00000035395  GLALPVPR---P.............LAFGQ.GRGPILLDNVECRGQEAALSECgsrg.....WGVHN......CFHYE
ENSMMUP00000035395  GAAMAATT---N.............AFFGY.GTGHILLDNVHCEGGEPRLAACqslg.....WGVHN......CGHHE
ENSMMUP00000020010  SGIAKAWH---Q.............AYFGE.GSGPVMLDEVRCTGNELSIEQCpkss.....WGEHN......CGHKE
ENSMMUP00000024680  GQAVSGPG---E.............AHFGP.GSGDIFLDNLQCSGVEHNLGQCahlg.....WSEHN......CGHHE
ENSMMUP00000025835  ENATQALG---R.............AAFGQ.GSGPIMLDEVQCMGTEASLADCkslg.....WLKSN......CRHER
ENSMMUP00000020010  KGPARART---M.............AYFGE.GKGPIHVDNVKCTGNERSLADCikqd.....IGRHN......CRHSE
ENSMMUP00000008356  GGAVAALG---A.............AAFGP.GSGPVWLDEVGCRGSEASLRGCpaer.....WGRGD......CAHKE
ENSMMUP00000027830  GWATSAPG---N.............ARFGQ.GSGPIVLHDVRCSGHESYLWSCphrg.....WLSHN......CGHHE
ENSMMUP00000029035  RGVEEVYR---T.............ARFGQ.GTGRIWMDDVACKGTEETIFRCsfsk.....WGVTN......CGHAE
ENSMMUP00000040296  GKPIRMFG---I.............TYFKE.ASGPIWLDDVSCIGNESDIWDCkhng.....WGKHN......CVHRE
ENSMMUP00000029108  GKPIRMFG---I.............TYFKE.ASGPIWLDDVSCIGNESDIWDCkhng.....WGKHN......CVHRE
ENSMMUP00000009478  RGVEEVYR---T.............ARFGQ.GTGRIWMDDVACKGTEETIFRCsfsk.....WGVTN......CGHAE
ENSMMUP00000006821  PTAITAIG---R.............VNASE.GFGHIWLDSVSCQGHEPAVWQCkhhe.....WGKHY......CNHNE
ENSMMUP00000040296  PFSFTMFH---F.............GQAVT.RYGKIWLDDVSCYGNESALWECqhre.....WGSHD......CNHGE
ENSMMUP00000029108  PFSFTMFH---F.............GQAVT.RYGKIWLDDVSCYGNESALWECqhre.....WGSHD......CNHGE
ENSMMUP00000032218  PGVQAVHK---A.............AHFGQ.GTGPIWLNEVYCFGRESSIEECkirq.....WGTRT......CSHSE
ENSMMUP00000032185  VEAKSWTA---S.............SSYGK.GEGPIWLDNLHCTGNEATLAACtsng.....WGVTD......CKHTE
ENSMMUP00000013470  EAALTWAH---S.............AKYGQ.GEGPIWLDNVRCVGTESSLDQCgsng.....WGVSD......CSHSE
ENSMMUP00000021906  VEAKSWTA---S.............SSYGK.GEGPIWLDNLHCTGNEATLAACtsng.....WGVTD......CKHTE
ENSMMUP00000032184  VEAKSWTA---S.............SSYGK.GEGPIWLDNLHCTGNEATLAACtsng.....WGVTD......CKHTE
ENSMMUP00000032186  VEAKSWTA---S.............SSYGK.GEGPIWLDNLHCTGNEATLAACtsng.....WGVTD......CKHTE
ENSMMUP00000006821  PTAIKATG---W.............ANSSA.GSGRIWMDHVSCRGNESALWDCkhdg.....WGKHSn.....CTHQQ
ENSMMUP00000026080  GKSLSPSFKD-R.............KSYGP.GVGRIWLDNVRCLGEEQSLEQCqhrf.....WGYHD......CTHQE
ENSMMUP00000027723  GQALAAPG---E.............AHFGP.GRGPILLDNVKCRGEESALLLCshir.....WDAHN......CDHSE
ENSMMUP00000029108  PSSFISSG---V.............VDSPA.VLGPIWLDDIICQGNELAIWNCrhrg.....WGNHD......CSHYE
ENSMMUP00000040296  PSSFISSG---V.............VDSPA.VLGPIWLDDIICQGNELAIWNCrhrg.....WGNHD......CSHYE
ENSMMUP00000035395  GQALAAPG---E.............AHFGP.GRGPILLDNVKCRGEESALLLCshir.....WDAHN......CDHSE
ENSMMUP00000002850  GSAREALS---G.............ARMGQ.GMGAIHLSEVRCSGQELSLWKCphkn.....ITAED......CSHSQ
ENSMMUP00000040296  PTSIIGMG---L.............GNTST.GYGKIWLDDVSCDGDESDLWSCrnsg.....WGNND......CSHGE
ENSMMUP00000029108  PTSIIGMG---L.............GNTST.GYGKIWLDDVSCDGDESDLWSCrnsg.....WGNND......CSHGE
ENSMMUP00000036437  GSAREALS---G.............ARMGQ.GMGAIHLSEVRCSGQELSLWKCphkn.....ITAED......CSHSQ
ENSMMUP00000020010  KYGKQASA----.............NHFEE.STGPIWLDDVSCSGKETRFLQCsrrq.....WGQHD......CSHHE
ENSMMUP00000006821  GTVVSILG---G.............AHFGE.GNGQIWAEEFQCEGHESHLSLC.........PVAPRpegt..CSHSR
ENSMMUP00000027826  GWAMSAPG---N.............AQFGQ.GSGPIVLDDVRCSGNKSYLWSCphnd.....WLSHS......CQHSE
ENSMMUP00000036437  TEATGWTH---S.............AKYGP.GTGRIWLDNLSCSGTEQSVTECasrg.....WGNSD......CTHDE
ENSMMUP00000002850  TEATGWTH---S.............AKYGP.GTGRIWLDNLSCSGTEQSVTECasrg.....WGNSD......CTHDE
ENSMMUP00000027829  GWATSAPG---N.............ARFGQ.GSGPIVLHDVRCSGHESYLWSCphrg.....WLSHN......CGHHE
ENSMMUP00000013470  GSAREALF---G.............ARLGQ.GLGPIHLSEVRCRGYERTLSDCpale.....GSQNG......CQHEN
ENSMMUP00000032185  GSAKEAVT---G.............SRLGQ.GIGPIHLNEIQCTGNEKSIIDCkfn......A---Esqg...CNHEE
ENSMMUP00000029108  GTALHFAG---L.............PHLQS.GSDVVWLDGVSCSGNESFLWDCrhsa.....TVNMD......CIHQN
ENSMMUP00000032184  GSAKEAVT---G.............SRLGQ.GIGPIHLNEIQCTGNEKSIIDCkfn......A---Esqg...CNHEE
ENSMMUP00000040296  GTALHFAG---L.............PHLQS.GSDVVWLDGVSCSGNESFLWDCrhsa.....TVNMD......CIHQN
ENSMMUP00000032186  GSAKEAVT---G.............SRLGQ.GIGPIHLNEIQCTGNEKSIIDCkfn......A---Esqg...CNHEE
ENSMMUP00000021906  GSAKEAVT---G.............SRLGQ.GIGPIHLNEIQCTGNEKSIIDCkfn......A---Esqg...CNHEE
ENSMMUP00000008356  GNAVAAPR---G.............GHFGD.GDAAIWPDAFHCGGTEPYLWNCpvst.....LGAPA......CAPGN
ENSMMUP00000006821  GVALSTPG---G.............AHFGK.GNGQVWRHMFHCTGTEQHMGDCpvta.....LGASL......CPSGQ
ENSMMUP00000008352  GPAVGAPK---Y.............VPLPG.EMAQPWLHNVSCRGNESSLWECslgs.....WSQSP......CPHTW
ENSMMUP00000026080  GAANGTPSGILY.............EPPAE.NEQKVFIQEVSCTGTEDTLAQCeq.......EEAYN......CLHNE
ENSMMUP00000026080  GRAVLTQKR--C.............NKPAQ.GQRSIWLSQMSCSGREATLQDCpsgp.....WGKST......CIHDE
ENSMMUP00000003507  SRGRALYK----.............--VGA.GTGQIWLDNVQCRGTESTLWSCskns.....WGSHD......CSHEE
ENSMMUP00000000133  AYAVRAVK---S.............AEFGQgGSLPILLDNVRCAGWERNLLECqhng.....VGTHN......CEHDE
ENSMMUP00000029108  GDAVSLSV---G.............DHFGK.GSGLTWAEKIQCEGSETHLALC.........PTVQHpedt..CIHSR
ENSMMUP00000040296  GDAVSLSV---G.............DHFGK.GSGLTWAEKIQCEGSETHLALC.........PTVQHpedt..CIHSR
ENSMMUP00000029108  PFSVFGSR---R.............AKPSN.EARDIWINSISCTGNESSLWDC.........IYDGKakrt..CFRRS
ENSMMUP00000040296  PFSVFGSR---R.............AKPSN.EARDIWINSISCTGNESSLWDC.........IYDGKakrt..CFRRS
ENSMMUP00000029108  GSPILVYR---E.............PHFTE.RTLHIFISNSGCTGREASLWDCirwe.....WKQTA......CRLNM
ENSMMUP00000040296  GSPILVYR---E.............PHFTE.RTLHIFISNSGCTGREASLWDCirwe.....WKQTA......CRLNM
ENSMMUP00000029108  GAAVSTTG---G.............KYIGE.RTGRVWGHRFHCLGNESLLDNCqmtv.....LGAPP......CIHGN
ENSMMUP00000040296  GAAVSTTG---G.............KYIGE.RTGRVWGHRFHCLGNESLLDNCqmtv.....LGAPP......CIHGN
ENSMMUP00000008356  GAAEQAYD---A.............PAPSR.GSVQVSLSRARCLGTETRLTQCnvsa.....TLQEP......AGTSR
ENSMMUP00000006821  GSALKTSY---Q.............VYSKI.QATNTWLFLSSCNGNETSLWDCknwq.....WGGLT......CDHYE
ENSMMUP00000020010  GGKGIAKQ---T.............PFSGL.GLIPIYWSNVRCRGDEENILLCekdi.....WQGGV......CPQKM
ENSMMUP00000006821  ADKGKINP---A.............SLDKA.MSIPMWVDNVQCPKGPDTLWQC.........PSSPWekrl..ARPSE
ENSMMUP00000036437  GYANHGLQETWY.............WDSGN.IT-EVVMSGVRCTGTELSLDQCah.......H--GThttckrTGTRF
ENSMMUP00000032185  GFASNAFQETWY.............WHGDV.YANKVVMSGVKCSGTELSLAHC.........RHDGEdva...CPQGG
ENSMMUP00000002850  GYANHGLQETWY.............WDSGN.IT-EVVMSGVRCTGTELSLDQCah.......H--GThttckrTGTRF
ENSMMUP00000032184  GFASNAFQETWY.............WHGDV.YANKVVMSGVKCSGTELSLAHC.........RHDGEdva...CPQGG
ENSMMUP00000021906  GFASNAFQETWY.............WHGDV.YANKVVMSGVKCSGTELSLAHC.........RHDGEdva...CPQGG
ENSMMUP00000032186  GFASNAFQETWY.............WHGDV.YANKVVMSGVKCSGTELSLAHC.........RHDGEdva...CPQGG
ENSMMUP00000029108  GENGVVSL---A.............PLSKI.GSGFMWVDDIQCSKTHISIWQC.........LSAPWerri..SSPAE
ENSMMUP00000040296  GENGVVSL---A.............PLSKI.GSGFMWVDDIQCSKTHISIWQC.........LSAPWerri..SSPAE
ENSMMUP00000013470  GFAIHAHKETWY.............WSEMP.RAQEVVMSGVRCSGTELALQQCqr.......HGPVH......CSHGG
ENSMMUP00000002850  PSEKRVNAAFYR.............LLAQR.QQHSFGLHGVACMGTEAHLSLCsle......FYRANdtar..CPGGG
ENSMMUP00000013470  PSEVPVDSHYYRkvwdlkmrdpksrLKSLT.NKNSFWIHQVTCLGTEPHMANCqvqvapvrgKLQPA......CPGGM
ENSMMUP00000027948  QQGADSER---F.............KLSDL.SINSTECLHVHCRGLETSLAECtf.......TKRRT......MDYQD
ENSMMUP00000020105  KNSFYSSQ---G.............IVDNS.GATSFMKLNTS-AGNVDIYKKL.........YHSDA......CSSKA
ENSMMUP00000035676  PSYVSSDNLRVS.............SLEGQ.FREEFVSINHLLPDDKVTALHHsv.......YVREG......CASGH
ENSMMUP00000036694  LRLTHHKGVNLT.............DIKLN.SSQEFAQLSPRLEGFLEEVWQP.........--RNN......CTSGQ
ENSMMUP00000008352  GPVLQAPRRD--.............-----.--VGVVRKYLACRGTEPTIRSCrldn.....NFRGS......CDLRL
ENSMMUP00000035677  PSYVSSDNLRVS.............SLEGQ.FREEFVSINHLLPDDKVTALHHsv.......YVREG......CASGH
ENSMMUP00000010010  ESAYRTTEVAHR.............DFANS.FS---------ISRYNSTIQES.........LHRSE......CPSQR
ENSMMUP00000010011  ESAYRTTEVAHR.............DFANS.FS---------ISRYNSTIQES.........LHRSE......CPSQR
ENSMMUP00000035395  GPALGATG---L.............GHFGY.GRGPVLLDNVGCAGTEARLSDCfhlg.....WGQHN......CGHHE
ENSMMUP00000019685  GVPLSLGP---F.............LITDR.-----HQSQITCYGRLGSFSNC.........SHSG-......RDVCR
ENSMMUP00000006441  LRALTHSELDVR.............TAGAN.GTSGFFCVDEGRLPHTQRLLEV.........ISVCD......CPRGR
ENSMMUP00000010013  SSKPTFRA---V.............EIGPD.QD----LDVVEITENSQELHVR.........NSSGP......CLSGS
ENSMMUP00000019685  GSFNSYQALDAG.............DPTSR.GLSCPHQKLSQCHELTERKSYC.........-----......----K
ENSMMUP00000032186  PGERTYNTKVYK.............KAIEP.GRGRSWPLEVPCVQLERRLS--.........-----......-----
ENSMMUP00000021906  PGERTYNTKV-Y.............KAIEP.GRGRSWPLEVPCVQLERRLS--.........-----......-----
ENSMMUP00000023760  PSYVSSDNLRVS.............SLEGQ.FREEFVSINHLLPDDKVTALHHsv.......YVREG......CASGH
ENSMMUP00000003072  ------------.............-----.-TGPIWLNEVYCFGRESSIEECkirq.....WGTRT......CSHSE
ENSMMUP00000013469  GFASNAFQETWY.............WHGDV.YANKVVMSGVKCSGTELSLAHC.........RHDGEdva...CPQGG
ENSMMUP00000032184  PGERTYNT----.............-----.----------------------.........-----......-----
ENSMMUP00000028788  GSGNSSMP----.............-IFST.NGGPFVKLNTAPDGSLILT---.........-PSQQ......CLQDS
ENSMMUP00000031673  LRRNRVL-----.............-----.----------------------.........-----......-----
ENSMMUP00000027723  ------------.............-----.-AGPRWAPRAWATSATAAAPDCfhlg.....WGQHN......CGHHE
ENSMMUP00000028679  GEPSVTEL---I.............QEQEK.ELRWLTLHSNWESLNGTTLHEL.........LVNGQs.....CQSRS


                           100       110      
                             |         |      
d1p57a_               F...LAAICQDCGRRK--lp....
ENSMMUP00000027831  D...AGVICSD-------ll....
ENSMMUP00000029108  D...AGVICSE-------ftalr.
ENSMMUP00000040296  D...AGVICSE-------ftalr.
ENSMMUP00000027828  D...AGVICTG-------gspr..
ENSMMUP00000027829  D...AGVICSD-------fe....
ENSMMUP00000027826  D...AGVICSG-------gsp...
ENSMMUP00000027828  D...AGVICSG-------......
ENSMMUP00000027828  D...AGVICSE-------n.....
ENSMMUP00000027831  D...AGVICSG-------......
ENSMMUP00000027826  D...AGVICSG-------gspr..
ENSMMUP00000027830  D...AGVICSG-------p.....
ENSMMUP00000027829  D...AGVICSG-------p.....
ENSMMUP00000027826  D...AGVICTG-------gspr..
ENSMMUP00000027829  D...AGVICTG-------p.....
ENSMMUP00000027829  D...AGVICSG-------s.....
ENSMMUP00000027826  D...AGVICSG-------gs....
ENSMMUP00000027830  D...AGVICTG-------p.....
ENSMMUP00000027830  D...AGVICSG-------s.....
ENSMMUP00000006821  D...AGVICSE-------fmsl..
ENSMMUP00000027826  D...AGVICS--------a.....
ENSMMUP00000027831  D...AGVICS--------......
ENSMMUP00000027828  D...AGVICSG-------gs....
ENSMMUP00000027830  D...AGVICS--------......
ENSMMUP00000027826  D...AGVICSG-------gh....
ENSMMUP00000027829  D...AGVICSG-------s.....
ENSMMUP00000027830  D...AGVICSG-------s.....
ENSMMUP00000027826  D...AGVICS--------a.....
ENSMMUP00000027830  D...AGVICSG-------s.....
ENSMMUP00000027826  D...AGVICSG-------gs....
ENSMMUP00000027829  D...AGVICSG-------......
ENSMMUP00000027831  D...AGVICSDC------......
ENSMMUP00000027829  D...AGVICSG-------p.....
ENSMMUP00000027830  D...AGVICSG-------p.....
ENSMMUP00000027829  D...AGVICS--------......
ENSMMUP00000027830  D...AGVICS--------......
ENSMMUP00000008356  D...AGVLCS--------ag....
ENSMMUP00000027832  D...AGVICSG-------npl...
ENSMMUP00000027826  D...AGVICSG-------gpp...
ENSMMUP00000006821  D...AGVICSK-------ga....
ENSMMUP00000006821  D...AAVNCTD-------is....
ENSMMUP00000027826  D...AGVICSG-------maq...
ENSMMUP00000029108  D...AGVRCSG-------q.....
ENSMMUP00000040296  D...AGVRCSG-------q.....
ENSMMUP00000035395  D...VAVLC---------da....
ENSMMUP00000035395  D...AGALC---------a.....
ENSMMUP00000020010  D...AGVSCTP-------l.....
ENSMMUP00000024680  D...ASVICSD-------te....
ENSMMUP00000025835  D...AGVVCTN-------etr...
ENSMMUP00000020010  D...AGVIC---------......
ENSMMUP00000008356  D...AGVRC---------......
ENSMMUP00000027830  D...AGVICS--------......
ENSMMUP00000029035  D...ASVTC---------n.....
ENSMMUP00000040296  D...VIVTCSG-------na....
ENSMMUP00000029108  D...VIVTCSG-------na....
ENSMMUP00000009478  D...ASVTC---------n.....
ENSMMUP00000006821  D...AGVTCSD-------g.....
ENSMMUP00000040296  D...VGVNCYG-------ea....
ENSMMUP00000029108  D...VGVNCYG-------ea....
ENSMMUP00000032218  D...AGVTCT--------......
ENSMMUP00000032185  D...VGVVCSD-------kr....
ENSMMUP00000013470  D...VGVICHP-------rr....
ENSMMUP00000021906  D...VGVVCSD-------kr....
ENSMMUP00000032184  D...VGVVCSD-------kr....
ENSMMUP00000032186  D...VGVVCSD-------kr....
ENSMMUP00000006821  D...AGVTCSD-------g.....
ENSMMUP00000026080  D...VAVICSG-------......
ENSMMUP00000027723  D...AGVLCQP-------......
ENSMMUP00000029108  D...VTLTCYD-------ss....
ENSMMUP00000040296  D...VTLTCYD-------ss....
ENSMMUP00000035395  D...AGVLCQP-------......
ENSMMUP00000002850  D...AGVRC---------n.....
ENSMMUP00000040296  D...VGVICSD-------a.....
ENSMMUP00000029108  D...VGVICSD-------a.....
ENSMMUP00000036437  D...AGVRC---------n.....
ENSMMUP00000020010  D...VSIACYP-------g.....
ENSMMUP00000006821  D...VGVVCSR-------y.....
ENSMMUP00000027826  -...ATVICS--------at....
ENSMMUP00000036437  D...AGVICKD-------qr....
ENSMMUP00000002850  D...AGVICKD-------qr....
ENSMMUP00000027829  D...AGVICS--------......
ENSMMUP00000013470  D...AAVRC---------n.....
ENSMMUP00000032185  D...AGVRCN--------tp....
ENSMMUP00000029108  D...VSVICSD-------g.....
ENSMMUP00000032184  D...AGVRCN--------tp....
ENSMMUP00000040296  D...VSVICSD-------g.....
ENSMMUP00000032186  D...AGVRCN--------tp....
ENSMMUP00000021906  D...AGVRCN--------tp....
ENSMMUP00000008356  S...ASAVCSG-------lp....
ENSMMUP00000006821  V...ASVICSG-------nqs...
ENSMMUP00000008352  V...VVALCSN-------gt....
ENSMMUP00000026080  D...AGALCE--------np....
ENSMMUP00000026080  D...TWVECED-------p.....
ENSMMUP00000003507  D...AGVECS--------......
ENSMMUP00000000133  D...AGVVCSH-------qn....
ENSMMUP00000029108  E...VGVVCSR-------y.....
ENSMMUP00000040296  E...VGVVCSR-------y.....
ENSMMUP00000029108  D...AGVICSD-------k.....
ENSMMUP00000040296  D...AGVICSD-------k.....
ENSMMUP00000029108  E...ASVICSA-------hr....
ENSMMUP00000040296  E...ASVICSA-------hr....
ENSMMUP00000029108  T...VSVICTG-------s.....
ENSMMUP00000040296  T...VSVICTG-------s.....
ENSMMUP00000008356  D...AGVVCSG-------......
ENSMMUP00000006821  E...AKITCS--------ah....
ENSMMUP00000020010  A...AAVTCS--------......
ENSMMUP00000006821  E...TWITC---------dn....
ENSMMUP00000036437  T...AGVICSE-------tasd..
ENSMMUP00000032185  VqygAGVACSE-------tapdl.
ENSMMUP00000002850  T...AGVICSE-------tasd..
ENSMMUP00000032184  VqygAGVACSE-------tapdl.
ENSMMUP00000021906  VqygAGVACSE-------tapdl.
ENSMMUP00000032186  VqygAGVACSE-------tapdl.
ENSMMUP00000029108  E...TWITCED-------......
ENSMMUP00000040296  E...TWITCED-------......
ENSMMUP00000013470  GrflAGVSCMD-------sapdlv
ENSMMUP00000002850  P...AVVSCVP-------......
ENSMMUP00000013470  H...AVVSCV--------agprfr
ENSMMUP00000027948  L...ADVVCY--------tqk...
ENSMMUP00000020105  V...VSLRCIACGVR---......
ENSMMUP00000035676  V...VTLQCTACGHR---......
ENSMMUP00000036694  V...VSLRCSECGAR---p.....
ENSMMUP00000008352  D...AEVVCSG-------eaa...
ENSMMUP00000035677  V...VTLQCTACGHR---......
ENSMMUP00000010010  Y...ISLQCSHCGLR---......
ENSMMUP00000010011  Y...ISLQCSHCGLR---......
ENSMMUP00000035395  D...AGALCAG-------p.....
ENSMMUP00000019685  P...LGLTCL--------epqttt
ENSMMUP00000006441  F...LATVCQDCGRR---k.....
ENSMMUP00000010013  L...VSLHCLACG-----es....
ENSMMUP00000019685  K...VFVTCQD-------pnpa..
ENSMMUP00000032186  -...--------------al....
ENSMMUP00000021906  -...--------------al....
ENSMMUP00000023760  V...VTLQCTACGHR---......
ENSMMUP00000003072  D...AGVTCT--------......
ENSMMUP00000013469  VqygAGVACSE-------tapdl.
ENSMMUP00000032184  -...--------------kvyke.
ENSMMUP00000028788  L...IRLRCNH-------kscgk.
ENSMMUP00000031673  -...--------------srw...
ENSMMUP00000027723  D...AGALC---------a.....
ENSMMUP00000028679  K...ISLLCTK-------qdc...


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Refine alignments

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Initial T99 seed sequence: NoYes

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Model: 0042161 (list models)
Initial SAMT99 seed:
Alignment:



Display Options:
Output in FASTA-like format: NoYes
Output column indices: NoYes
Sequence index (number) on each line: NoYes

Max number of insertions shown: (0 does not show insertions)
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Maximum number of sequences:
Exclude sequences shorter than: residues



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Add alignments from genomes

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Select to display   Genome
NoYes   Canis familiaris 58 (pseudogenes) - Dog
NoYes   Danio rerio 58 (pseudogenes) - Zebrafish
NoYes   Gallus gallus 58 (pseudogene) - Chicken
NoYes   Homo sapiens 58 (pseudogenes) - Human
NoYes   Mus musculus 56 (pseudogenes) - House mouse
NoYes   Pan troglodytes 58 (pseudogenes) - Chimpanzee
NoYes   Rattus norvegicus 58 (pseudogenes) - Norway rat
NoYes   Homo sapiens 76_38 - Human
NoYes   Pan troglodytes 76_2.1.4 - Chimpanzee
NoYes   Gorilla gorilla 76_3.1 - Western gorilla
NoYes   Pongo abelii 76_2 - Sumatran orangutan
NoYes   Tarsius syrichta 76_1
NoYes   Nomascus leucogenys 76_1.0 - Northern white-cheeked gibbon
NoYes   Papio anubis 76 - Olive baboon
NoYes   Macaca mulatta 76_1 - Rhesus monkey
NoYes   Callithrix jacchus 76_3.2.1 - White-tufted-ear marmoset
NoYes   Otolemur garnettii 76_3 - Small-eared galago
NoYes   Microcebus murinus 76_1 - Gray mouse lemur
NoYes   Rattus norvegicus 76_5.0 - Norway rat
NoYes   Mus musculus 76_38 - House mouse
NoYes   Dipodomys ordii 76_1 - Ord's kangaroo rat
NoYes   Ictidomys tridecemlineatus 76_2 - Thirteen-lined ground squirrel
NoYes   Heterocephalus glaber v1.7-2 - Naked mole-rat
NoYes   Cavia porcellus 76_3 - Domestic guinea pig
NoYes   Oryctolagus cuniculus 76_2 - Rabbit
NoYes   Ochotona princeps 76 - American pika
NoYes   Tupaia belangeri 76 - Northern tree shrew
NoYes   Sus scrofa 76_10.2 - Pig
NoYes   Bos taurus 76_3.1 - Cattle
NoYes   Ovis aries 76_3.1 - Sheep
NoYes   Vicugna pacos 76_1 - Alpaca
NoYes   Tursiops truncatus 76_1 - Bottlenose dolphin
NoYes   Mustela putorius furo 76_1.0 - Domestic ferret
NoYes   Ailuropoda melanoleuca 76_1 - Giant panda
NoYes   Canis familiaris 76_3.1 - Dog
NoYes   Felis catus 76_6.2 - Domestic cat
NoYes   Equus caballus 76_2 - Horse
NoYes   Myotis lucifugus 76_2.0 - Little brown bat
NoYes   Pteropus vampyrus 76_1 - Large flying fox
NoYes   Sorex araneus 76_1 - European shrew
NoYes   Erinaceus europaeus 76 - Western European hedgehog
NoYes   Procavia capensis 76_1 - Cape rock hyrax
NoYes   Loxodonta africana 76_3 - African savanna elephant
NoYes   Echinops telfairi 76 - Small Madagascar hedgehog
NoYes   Dasypus novemcinctus 76_2 - Nine-banded armadillo
NoYes   Choloepus hoffmanni 76_1 - Hoffmann's two-fingered sloth
NoYes   Macropus eugenii 76_1.0 - Tammar wallaby
NoYes   Sarcophilus harrisii 76_7.0 - Tasmanian devil
NoYes   Monodelphis domestica 76_5 - Gray short-tailed opossum
NoYes   Ornithorhynchus anatinus 76_5 - Platypus
NoYes   Saccoglossus kowalevskii v3.0
NoYes   Petromyzon marinus 76_7.0 - Sea lamprey
NoYes   Meleagris gallopavo 76_2 - Turkey
NoYes   Gallus gallus 76_4 - Chicken
NoYes   Anas platyrhynchos 76_1.0 - Mallard
NoYes   Taeniopygia guttata 76_3.2.4 - Zebra finch
NoYes   Ficedula albicollis 76_1.0 - Collared flycatcher
NoYes   Pelodiscus sinensis 76_1.0 - Chinese soft-shelled turtle
NoYes   Anolis carolinensis 76_2.0 - Green anole
NoYes   Xenopus laevis - African clawed frog
NoYes   Xenopus tropicalis 76_4.2 - Tropical clawed frog
NoYes   Latimeria chalumnae 76_1 - Coelacanth
NoYes   Lepisosteus oculatus 76 - Spotted gar
NoYes   Gadus morhua 76_1 - Atlantic cod
NoYes   Tetraodon nigroviridis 76_8 - Spotted green pufferfish
NoYes   Takifugu rubripes 76_4 - Torafugu
NoYes   Gasterosteus aculeatus 76_1 - Three-spined stickleback
NoYes   Oryzias latipes 76_1 - Japanese medaka
NoYes   Xiphophorus maculatus 76_4.4.2 - Southern platyfish
NoYes   Poecilia formosa 76 - Amazon molly
NoYes   Oreochromis niloticus 76_1.0 - Nile tilapia
NoYes   Astyanax mexicanus 76 - Mexican tetra
NoYes   Danio rerio 76_9 - Zebrafish
NoYes   Oikopleura dioica
NoYes   Ciona savignyi 76_2.0 - Pacific transparent sea squirt
NoYes   Ciona intestinalis 76 - Vase tunicate
NoYes   Strongylocentrotus purpuratus v3.1 - Purple sea urchin
NoYes   Adineta vaga
NoYes   Octopus bimaculoides 280
NoYes   Crassostrea gigas 22 - Pacific oyster
NoYes   Lottia gigantea - Owl limpet
NoYes   Helobdella robusta
NoYes   Capitella sp. I
NoYes   Danaus plexippus OGS1.0 - Monarch butterfly
NoYes   Heliconius melpomene - Postman butterfly
NoYes   Bombyx mori - Domestic silkworm
NoYes   Nasonia vitripennis - Jewel wasp
NoYes   Apis mellifera 38.2d - Honey bee
NoYes   Harpegnathos saltator v3.3 - Jerdon's jumping ant
NoYes   Linepithema humile v1.1 - Argentine ant
NoYes   Pogonomyrmex barbatus v1.2 - Red harvester ant
NoYes   Solenopsis invicta v.2.2.3 - Red fire ant
NoYes   Acromyrmex echinatior v3.8 - Panamanian leafcutter ant
NoYes   Atta cephalotes v1.1
NoYes   Camponotus floridanus v3.3 - Florida carpenter ant
NoYes   Lucilia cuprina - Australian sheep blowfly
NoYes   Drosophila grimshawi 1.3
NoYes   Drosophila willistoni 1.3
NoYes   Drosophila pseudoobscura 2.13
NoYes   Drosophila persimilis 1.3
NoYes   Drosophila suzukii
NoYes   Drosophila yakuba 1.3
NoYes   Drosophila simulans 1.3
NoYes   Drosophila sechellia 1.3
NoYes   Drosophila melanogaster 76_5 - Fruit fly
NoYes   Drosophila erecta 1.3
NoYes   Drosophila ananassae 1.3
NoYes   Drosophila virilis 1.2
NoYes   Drosophila mojavensis 1.3
NoYes   Megaselia scalaris 22
NoYes   Aedes aegypti 55 - Yellow fever mosquito
NoYes   Culex pipiens quinquefasciatus - Southern house mosquito
NoYes   Anopheles darlingi 22 - American malaria mosquito
NoYes   Anopheles gambiae 49_3j - African malaria mosquito
NoYes   Tribolium castaneum 3.0 - Red flour beetle
NoYes   Pediculus humanus corporis - Human body louse
NoYes   Acyrthosiphon pisum - Pea aphid
NoYes   Rhodnius prolixus 22
NoYes   Daphnia pulex - Common water flea
NoYes   Strigamia maritima 22
NoYes   Sarcoptes scabiei
NoYes   Tetranychus urticae - Two-spotted spider mite
NoYes   Ixodes scapularis - Black-legged tick
NoYes   Pristionchus pacificus
NoYes   Meloidogyne hapla
NoYes   Onchocerca volvulus 22
NoYes   Brugia malayi WS250 - Agent of lymphatic filariasis
NoYes   Caenorhabditis japonica
NoYes   Caenorhabditis brenneri
NoYes   Caenorhabditis remanei
NoYes   Caenorhabditis elegans 76_235 - Roundworm
NoYes   Caenorhabditis briggsae 2
NoYes   Trichinella spiralis 22
NoYes   Hymenolepis microstoma
NoYes   Echinococcus multilocularis
NoYes   Echinococcus granulosus
NoYes   Taenia solium - Pork tapeworm
NoYes   Schistosoma mansoni
NoYes   Mnemiopsis leidyi - Sea walnut
NoYes   Acropora digitifera v1.0
NoYes   Nematostella vectensis 1.0 - Starlet sea anemone
NoYes   Hydra vulgaris
NoYes   Amphimedon queenslandica
NoYes   Trichoplax adhaerens
NoYes   Chlorella variabilis sp. NC64A
NoYes   Volvox carteri f. nagariensis
NoYes   Volvox carteri v199
NoYes   Chlamydomonas reinhardtii 4.0
NoYes   Bigelowiella natans CCMP2755 22
NoYes   Cyanophora paradoxa
NoYes   Aureococcus anophagefferens
NoYes   Cryptosporidium hominis
NoYes   Cryptosporidium muris
NoYes   Cryptosporidium parvum Iowa II
NoYes   Neospora caninum
NoYes   Toxoplasma gondii VEG
NoYes   Toxoplasma gondii ME49
NoYes   Toxoplasma gondii GT1
NoYes   Babesia bovis T2Bo
NoYes   Theileria parva
NoYes   Theileria annulata
NoYes   Plasmodium falciparum 3D7
NoYes   Plasmodium vivax SaI-1 7.0
NoYes   Plasmodium knowlesi strain H
NoYes   Plasmodium yoelii ssp. yoelii 1
NoYes   Plasmodium chabaudi
NoYes   Plasmodium berghei ANKA
NoYes   Symbiodinium minutum clade B1 v1.2
NoYes   Guillardia theta CCMP2712 v1.0
NoYes   Emiliania huxleyi CCMP1516
NoYes   Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) - Tropical clawed frog
NoYes   Drosophila melanogaster FlyBase 5.12 - Fruit fly
NoYes   Anopheles gambiae VectorBase AgamP3.6 - African malaria mosquito
NoYes   Ascaris suum Victoria/Ghent - Pig roundworm
NoYes   Caenorhabditis elegans WormBase WS218 - Roundworm
NoYes   Neospora caninum Nc-Liverpool 6.2
NoYes   Plasmodium falciparum HB3
NoYes   Plasmodium falciparum Dd2
NoYes   Homo sapiens 69_37 - Human
NoYes   Pan troglodytes 69_2.1.4 - Chimpanzee
NoYes   Gorilla gorilla 69_3.1 - Western gorilla
NoYes   Pongo abelii 69_2 - Sumatran orangutan
NoYes   Nomascus leucogenys 69_1.0 - Northern white-cheeked gibbon
NoYes   Macaca mulatta 69_1 - Rhesus monkey
NoYes   Callithrix jacchus 69_3.2.1 - White-tufted-ear marmoset
NoYes   Otolemur garnettii 69_3 - Small-eared galago
NoYes   Tarsius syrichta 69_1
NoYes   Microcebus murinus 69_1 - Gray mouse lemur
NoYes   Rattus norvegicus 69_3.4 - Norway rat
NoYes   Mus musculus 69_38 - House mouse
NoYes   Dipodomys ordii 69_1 - Ord's kangaroo rat
NoYes   Ictidomys tridecemlineatus 69_2 - Thirteen-lined ground squirrel
NoYes   Cavia porcellus 69_3 - Domestic guinea pig
NoYes   Oryctolagus cuniculus 69_2 - Rabbit
NoYes   Ochotona princeps 69 - American pika
NoYes   Tupaia belangeri 69 - Northern tree shrew
NoYes   Sus scrofa 69_10.2 - Pig
NoYes   Bos taurus 69_3.1 - Cattle
NoYes   Vicugna pacos 69_1 - Alpaca
NoYes   Tursiops truncatus 69_1 - Bottlenose dolphin
NoYes   Mustela putorius furo 69_1.0 - Domestic ferret
NoYes   Ailuropoda melanoleuca 69_1 - Giant panda
NoYes   Canis familiaris 69_3.1 - Dog
NoYes   Felis catus 69 - Domestic cat
NoYes   Equus caballus 69_2 - Horse
NoYes   Myotis lucifugus 69_2.0 - Little brown bat
NoYes   Pteropus vampyrus 69_1 - Large flying fox
NoYes   Sorex araneus 69_1 - European shrew
NoYes   Erinaceus europaeus 69 - Western European hedgehog
NoYes   Procavia capensis 69_1 - Cape rock hyrax
NoYes   Loxodonta africana 69_3 - African savanna elephant
NoYes   Echinops telfairi 69 - Small Madagascar hedgehog
NoYes   Dasypus novemcinctus 69_2 - Nine-banded armadillo
NoYes   Choloepus hoffmanni 69_1 - Hoffmann's two-fingered sloth
NoYes   Macropus eugenii 69_1.0 - Tammar wallaby
NoYes   Sarcophilus harrisii 69_7.0 - Tasmanian devil
NoYes   Monodelphis domestica 69_5 - Gray short-tailed opossum
NoYes   Ornithorhynchus anatinus 69_5 - Platypus
NoYes   Petromyzon marinus 69_7.0 - Sea lamprey
NoYes   Meleagris gallopavo 69_2 - Turkey
NoYes   Gallus gallus 69_2 - Chicken
NoYes   Taeniopygia guttata 69_3.2.4 - Zebra finch
NoYes   Pelodiscus sinensis 69_1.0 - Chinese soft-shelled turtle
NoYes   Anolis carolinensis 69_2.0 - Green anole
NoYes   Xenopus tropicalis 69_4.2 - Tropical clawed frog
NoYes   Latimeria chalumnae 69_1 - Coelacanth
NoYes   Gadus morhua 69_1 - Atlantic cod
NoYes   Tetraodon nigroviridis 69_8 - Spotted green pufferfish
NoYes   Takifugu rubripes 69_4 - Torafugu
NoYes   Gasterosteus aculeatus 69_1 - Three-spined stickleback
NoYes   Oryzias latipes 69_1 - Japanese medaka
NoYes   Xiphophorus maculatus 69_4.4.2 - Southern platyfish
NoYes   Oreochromis niloticus 69_1.0 - Nile tilapia
NoYes   Danio rerio 69_9 - Zebrafish
NoYes   Ciona savignyi 69_2.0 - Pacific transparent sea squirt
NoYes   Ciona intestinalis 69 - Vase tunicate
NoYes   Drosophila melanogaster 69_5 - Fruit fly
NoYes   Caenorhabditis elegans 69_215 - Roundworm
NoYes   Homo sapiens 75_37 - Human
NoYes   Homo sapiens - Human
NoYes   Mus musculus 63_37 (longest transcript per gene) - House mouse
NoYes   Loa loa v3.3 - Eye worm
NoYes   Wuchereria bancrofti v1.0 - Agent of lymphatic filariasis
NoYes   NCBI 2017_08 genome
NoYes   Protozoadb 2010_08 (Protozoadb)
NoYes   Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)
NoYes   Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)
NoYes   Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)
NoYes   STRING v9.0.5 (STRING)
NoYes   Uniprot 2018_03 genome
NoYes   Global Ocean Sampling Expedition (GOS)
NoYes   PDB chains (SCOP 1.75) (PDB)
NoYes   Protein Data Bank (all PDB sequenc)
NoYes   SCOP2 SCOPe CATH ECOD (all domain sequ)
NoYes   TargetDB (Targets)
NoYes   ALL (only advised for small superfamilies)


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