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Gametocyte protein Pfg27 alignments

These alignments are sequences aligned to the 0041249 model.

Sophisticated options are available for refining alignments:


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Alignments

The numbers along the top are the segment numbers of the HMM states, and each sequence is seperately aligned to the model.
The first sequence is the seed the model was built from.
Upper case letters are aligned, lower case letters are insertions, '-' signifies a deletion and '.' is nothing.

                                10        20        30        40        50        60        70      
                                 |         |         |         |         |         |         |      
d1n81a_          .....YHYEHE..THAPLSPRIRKVGDIEFHACSDYIYLLMTLSKDPEKFNYALKDRVSIRRYVRKNQNRYNYFLIEERVQDN
PF13_0011      .....YHYEHE..THAPLSPRIRKVGDIEFHACSDYIYLLMTLSKDPEKFNYALKDRVSIRRYVRKNQNRYNYFLIEERVQDN
PFB0115w       .....YKYEDMlkRDKDLFTIINNICELEFNSTNNY--LMKIINNDKLKHN-SLNDNEAILKEITKTQNELFSLKLPLEIKVS
gb|PVX_003560  ..lys------..-----------IFFVEFETTETYLNKIINCATDEEKNE-LLEDHIGILQEMYENNKKHDNYRLPFELRDS
PKH_041740     yktif------..----------LILSTEFDTTETYLNKIMNCSTDEEKNE-LLDDHIGILKEMYENCKKNENFRLPFEIRDS
PFHG_05440T0   ....f------..----------------------------------------------------------------------
PFDG_04088T0   .....YKYEDMlkRDKDLFTIINNICELEFNSTNNY--LMKIINNDKLKHN-SLNDNEAILKEITKTQNELFSLKLPLEIKVS


                   80        90       100       110       120       130       140       150       16
                    |         |         |         |         |         |         |         |         
d1n81a_          IVNRISDRLISYCTDKEVTEDYIKKIDDYLWVEQRVIEEVSINVDHAREVKEKKRIMNDKKLIRMLFDTYEYVKDVKFTDDQY
PF13_0011      IVNRISDRLISYCTDKEVTEDYIKKIDDYLWVEQRVIEEVSINVDHAREVKEKKRIMNDKKLIRMLFDTYEYVKDVKFTDDQY
PFB0115w       MALRISERLRAFVFDKDLTAYYIKKLKDIFKLETEAAKNYYYYVKCQKTFSDKKRLVNNLDSIKLYYESQINKNFISIPKDKI
gb|PVX_003560  MALRISDRLRDYCFSEPLTDSYVLTLKSIFSLELEVFKGLFYYVKHKSTYSEKKEVINDLELIKFYHEELVTDNGLFLTDEQL
PKH_041740     MALRISDRLRDFCFSDYVTESNMVALKSIFSIELEVFEGIFYYIEHKNTYREKKEVINDLELIKFYHEELITNNGLYLTDEQF
PFHG_05440T0   ------------------TEDYIKKIDDYLWVEQRVIEEVSINVDHAREVKEKKRIMNDKKLIRMLFDTYEYVKDVKFTDDQY
PFDG_04088T0   MALRISERLRAFVFDKDLTAYYIKKLKDIFKLETEAAKNYYYYVKCQKTFSDKKRLVNNLDSIKLYYESQINKNFISIPKDKI


                 0       170       180      
                 |         |         |      
d1n81a_          KDAAARISQFLIDVVDSYIIKPIPALP
PF13_0011      KDAAARISQFLIDVVDSYIIKPIPALP
PFB0115w       PTAIYRISNLVNDL--------IFLLP
gb|PVX_003560  DNAAMRVSNFVNDI-------------
PKH_041740     DNAAMRVSNFVNDL-------------
PFHG_05440T0   KDAAARISQFLIDVVDSYIIKPIPALP
PFDG_04088T0   PTAIYRISNLVNDL--------IFLLP


Statistics on alignment.   Save alignment.

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Refine alignments

Sophisticated options are available for refining alignments:

Add your sequences to the alignment:
Members of the same: including
Include all superfamily members: , or just those assigned by the selected model:
Initial T99 seed sequence: NoYes

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Model: 0041249 (list models)
Initial SAMT99 seed:
Alignment:



Display Options:
Output in FASTA-like format: NoYes
Output column indices: NoYes
Sequence index (number) on each line: NoYes

Max number of insertions shown: (0 does not show insertions)
Characters per line:
Character to show inserts:
Maximum number of sequences:
Exclude sequences shorter than: residues



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Add alignments from genomes

Select below additional genomes you would like to see alignments for, then click on 'Re-Submit'. The genome assignments will be added to this page.


Select to display   Genome
NoYes   Plasmodium falciparum 3D7
NoYes   Plasmodium vivax SaI-1 7.0
NoYes   Plasmodium knowlesi strain H
NoYes   Plasmodium falciparum HB3
NoYes   Plasmodium falciparum Dd2
NoYes   Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)
NoYes   NCBI 2017_08 genome
NoYes   Protozoadb 2010_08 (Protozoadb)
NoYes   STRING v9.0.5 (STRING)
NoYes   Uniprot 2018_03 genome
NoYes   Global Ocean Sampling Expedition (GOS)
NoYes   PDB chains (SCOP 1.75) (PDB)
NoYes   Protein Data Bank (all PDB sequenc)
NoYes   SCOP2 SCOPe CATH ECOD (all domain sequ)
NoYes   ALL (only advised for small superfamilies)


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