SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for 101697 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

101697 - Hypothetical protein YfhH

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Pongo_abelii_76_2   (Sumatran orangutan)   0
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_76_3   (Small-eared galago)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Rattus_norvegicus_76_5.0   (Norway rat)   0
Mus_musculus_76_38   (House mouse)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Ochotona_princeps_76   (American pika)   0
Sus_scrofa_76_10.2   (Pig)   0
Bos_taurus_76_3.1   (Cattle)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   0
Felis_catus_76_6.2   (Domestic cat)   0
Equus_caballus_76_2   (Horse)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Pteropus_vampyrus_76_1   (Large flying fox)   0
Loxodonta_africana_76_3   (African savanna elephant)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   0
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Anas_platyrhynchos_76_1.0   (Mallard)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Anolis_carolinensis_76_2.0   (Green anole)   0
Xenopus_laevis_   (African clawed frog)   0
Lepisosteus_oculatus_76   (Spotted gar)   0
Takifugu_rubripes_76_4   (Torafugu)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Danio_rerio_76_9   (Zebrafish)   0
Oikopleura_dioica 0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Bombyx_mori_   (Domestic silkworm)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Atta_cephalotes_v1.1 0
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_yakuba_1.3 0
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Drosophila_mojavensis_1.3 0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Pristionchus_pacificus_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_briggsae_2 0
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Conidiobolus_coronatus_NRRL28638_v1.0 0
Wallemia_sebi_v1.0 0
Piloderma_croceum_F_1598_v1.0 0
Pisolithus_microcarpus_441_v1.0 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Fomitopsis_pinicolav1.0 0
Fomitopsis_pinicola_FP-58527_SS1_v3.0 0
Daldinia_eschscholzii_EC12_v1.0 0
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Setosphaeria_turcica_v1.0 0
Cochliobolus_lunatus_m118_v2.0 0
Aspergillus_sydowii_v1.0 0
Aspergillus_versicolor_v1.0 0
Aspergillus_oryzae_RIB40_ 0
Aspergillus_flavus_NRRL3357_ 0
Vanderwaltozyma_polyspora_DSM_70294_ 0
Kluyveromyces_lactis 0
Schizosaccharomyces_octosporus_yFS286_ 0
Allomyces_macrogynus_ATCC_38327_ 0
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Gossypium_raimondii_v221 0
Citrus_sinensis_v154   (Sweet orange)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Actinidia_chinensis_Hongyang_ 0
Aquilegia_coerulea_v195 0
Triticum_aestivum_22   (Bread wheat)   0
Oryza_brachyantha_22   (Malo sina)   0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Bigelowiella_natans_CCMP2755_22 0
Ectocarpus_siliculosus 0
Paramecium_tetraurelia_ 0
Tetrahymena_thermophila_SB210_1_ 0
Ichthyophthirius_multifiliis_strain_G5_ 0
Naegleria_gruberi_ 0
Trichomonas_vaginalis_ 0
Leptolyngbya_sp._PCC_7376 0
Mycoplasma_haemocanis_str._Illinois 0
Mycoplasma_haemofelis_Ohio2 0
Microlunatus_phosphovorus_NM-1 0
Arthrobacter_sp._FB24 0
Finegoldia_magna_ATCC_29328 0
Dehalobacter_sp._DCA 0
Dehalobacter_sp._CF 0
Alkaliphilus_metalliredigens_QYMF 0
Caldicellulosiruptor_obsidiansis_OB47 0
Caldicellulosiruptor_kronotskyensis_2002 0
Caldicellulosiruptor_hydrothermalis_108 0
Caldicellulosiruptor_owensensis_OL 0
Caldicellulosiruptor_kristjanssonii_177R1B 0
Caldicellulosiruptor_saccharolyticus_DSM_8903 0
Caldicellulosiruptor_bescii_DSM_6725 0
Exiguobacterium_sp._MH3 1
Exiguobacterium_sp._AT1b 1
Exiguobacterium_sibiricum_255-15 1
Kyrpidia_tusciae_DSM_2912 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 1
Brevibacillus_brevis_NBRC_100599 1
Paenibacillus_mucilaginosus_3016 1
Bacillus_selenitireducens_MLS10 1
Solibacillus_silvestris_StLB046 1
Geobacillus_thermoglucosidasius_C56-YS93 1
Lysinibacillus_sphaericus_C3-41 1
Oceanobacillus_iheyensis_HTE831 1
Anoxybacillus_flavithermus_WK1 1
Geobacillus_thermoleovorans_CCB_US3_UF5 1
Geobacillus_kaustophilus_HTA426 1
Geobacillus_sp._GHH01 1
Geobacillus_sp._WCH70 1
Geobacillus_thermodenitrificans_NG80-2 1
Halobacillus_halophilus_DSM_2266 1
Bacillus_sp._JS 1
Bacillus_sp._1NLA3E 1
Bacillus_amyloliquefaciens_FZB42 1
Bacillus_atrophaeus_1942 1
Bacillus_subtilis_subsp._subtilis_str._168 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_halodurans_C-125 1
Bacillus_weihenstephanensis_KBAB4 1
Bacillus_thuringiensis_str._Al_Hakam 1
Bacillus_cereus_03BB102 1
Bacillus_anthracis_str._A0248 1
Bacillus_pseudofirmus_OF4 1
Bacillus_clausii_KSM-K16 1
Bacillus_cellulosilyticus_DSM_2522 1
Bacillus_pumilus_SAFR-032 1
Bacillus_megaterium_DSM_319 1
Bacillus_coagulans_2-6 1
Macrococcus_caseolyticus_JCSC5402 1
Staphylococcus_pseudintermedius_HKU10-03 1
Staphylococcus_saprophyticus_subsp._saprophyticus_ATCC_15305 1
Staphylococcus_lugdunensis_HKU09-01 1
Staphylococcus_haemolyticus_JCSC1435 1
Staphylococcus_epidermidis_RP62A 1
Staphylococcus_carnosus_subsp._carnosus_TM300 1
Staphylococcus_aureus_subsp._aureus_JH1 1
Dyadobacter_fermentans_DSM_18053 0
Polaribacter_sp._MED152 0
Flavobacterium_johnsoniae_UW101 0
Aminobacterium_colombiense_DSM_12261 0
Arcobacter_butzleri_RM4018 0
Desulfovibrio_magneticus_RS-1 0
Anaeromyxobacter_sp._Fw109-5 0
Anaeromyxobacter_dehalogenans_2CP-1 0
Polaromonas_naphthalenivorans_CJ2 0
Nitrosomonas_sp._Is79A3 0
Azospirillum_sp._B510 0
Aggregatibacter_aphrophilus_NJ8700 0
Aggregatibacter_actinomycetemcomitans_D7S-1 0
Haemophilus_somnus_129PT 0
Haemophilus_parainfluenzae_T3T1 0
Vibrio_sp._Ex25 0
Vibrio_anguillarum_775 0
Vibrio_vulnificus_MO6-24/O 0
Vibrio_cholerae_O395 0
Photobacterium_profundum_SS9 0
Methanoculleus_bourgensis_MS2 0
Thermococcus_sibiricus_MM_739 0
Haloferax_volcanii_DS2 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Dactylococcopsis_salina_PCC_8305 0
Mycoplasma_haemofelis_str._Langford_1 0
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 0
Exiguobacterium_antarcticum_B7 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 1
Paenibacillus_mucilaginosus_KNP414 1
Paenibacillus_mucilaginosus_K02 1
Geobacillus_sp._C56-T3 1
Geobacillus_sp._Y4.1MC1 1
Geobacillus_sp._Y412MC52 1
Geobacillus_sp._Y412MC61 1
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 1
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 1
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 1
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 1
Bacillus_amyloliquefaciens_LFB112 1
Bacillus_amyloliquefaciens_CC178 1
Bacillus_amyloliquefaciens_Y2 1
Bacillus_amyloliquefaciens_IT-45 1
Bacillus_amyloliquefaciens_XH7 1
Bacillus_amyloliquefaciens_LL3 1
Bacillus_amyloliquefaciens_TA208 1
Bacillus_amyloliquefaciens_DSM_7 1
Bacillus_licheniformis_9945A 1
Bacillus_subtilis_PY79 1
Bacillus_subtilis_XF-1 1
Bacillus_subtilis_QB928 1
Bacillus_subtilis_BSn5 1
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1
Bacillus_subtilis_subsp._natto_BEST195 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_infantis_NRRL_B-14911 1
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 1
Bacillus_toyonensis_BCT-7112 1
Bacillus_thuringiensis_HD-771 1
Bacillus_thuringiensis_HD-789 1
Bacillus_thuringiensis_MC28 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 1
Bacillus_thuringiensis_YBT-1518 1
Bacillus_thuringiensis_Bt407 1
Bacillus_thuringiensis_serovar_konkukian_str._97-27 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1
Bacillus_thuringiensis_BMB171 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1
Bacillus_cereus_FRI-35 1
Bacillus_cereus_biovar_anthracis_str._CI 1
Bacillus_cereus_AH820 1
Bacillus_cereus_AH187 1
Bacillus_cereus_B4264 1
Bacillus_cereus_G9842 1
Bacillus_cereus_Q1 1
Bacillus_cereus_F837/76 1
Bacillus_cereus_NC7401 1
Bacillus_cereus_E33L 1
Bacillus_cereus_ATCC_14579 1
Bacillus_cereus_ATCC_10987 1
Bacillus_anthracis_str._H9401 1
Bacillus_anthracis_str._CDC_684 1
Bacillus_anthracis_str._'Ames_Ancestor' 1
Bacillus_anthracis_str._Sterne 1
Bacillus_anthracis_str._Ames 1
Bacillus_megaterium_WSH-002 1
Bacillus_megaterium_QM_B1551 1
Bacillus_coagulans_36D1 1
Staphylococcus_aureus_subsp._aureus_MSHR1132 1
Staphylococcus_pseudintermedius_ED99 1
Staphylococcus_pasteuri_SP1 1
Staphylococcus_lugdunensis_N920143 1
Staphylococcus_warneri_SG1 1
Staphylococcus_epidermidis_ATCC_12228 1
Staphylococcus_aureus_CA-347 1
Staphylococcus_aureus_Bmb9393 1
Staphylococcus_aureus_M1 1
Staphylococcus_aureus_08BA02176 1
Staphylococcus_aureus_04-02981 1
Staphylococcus_aureus_subsp._aureus_Z172 1
Staphylococcus_aureus_subsp._aureus_6850 1
Staphylococcus_aureus_subsp._aureus_SA957 1
Staphylococcus_aureus_subsp._aureus_CN1 1
Staphylococcus_aureus_subsp._aureus_SA40 1
Staphylococcus_aureus_subsp._aureus_11819-97 1
Staphylococcus_aureus_subsp._aureus_M013 1
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 1
Staphylococcus_aureus_subsp._aureus_VC40 1
Staphylococcus_aureus_subsp._aureus_T0131 1
Staphylococcus_aureus_subsp._aureus_LGA251 1
Staphylococcus_aureus_subsp._aureus_ECT-R_2 1
Staphylococcus_aureus_subsp._aureus_JKD6159 1
Staphylococcus_aureus_subsp._aureus_ED98 1
Staphylococcus_aureus_subsp._aureus_TW20 1
Staphylococcus_aureus_subsp._aureus_55/2053 1
Staphylococcus_aureus_subsp._aureus_TCH60 1
Staphylococcus_aureus_subsp._aureus_str._JKD6008 1
Staphylococcus_aureus_subsp._aureus_71193 1
Staphylococcus_aureus_subsp._aureus_S0385 1
Staphylococcus_aureus_subsp._aureus_str._Newman 1
Staphylococcus_aureus_subsp._aureus_Mu3 1
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 1
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 1
Staphylococcus_aureus_subsp._aureus_JH9 1
Staphylococcus_aureus_subsp._aureus_MSSA476 1
Staphylococcus_aureus_subsp._aureus_MRSA252 1
Staphylococcus_aureus_subsp._aureus_MW2 1
Staphylococcus_aureus_subsp._aureus_N315 1
Staphylococcus_aureus_subsp._aureus_Mu50 1
Staphylococcus_aureus_subsp._aureus_COL 1
Staphylococcus_aureus_subsp._aureus_NCTC_8325 1
Brachyspira_pilosicoli_B2904 0
Brachyspira_pilosicoli_P43/6/78 0
Fusobacterium_nucleatum_subsp._vincentii_3_1_36A2 0
Anaeromyxobacter_dehalogenans_2CP-C 0
Aggregatibacter_actinomycetemcomitans_D11S-1 0
Vibrio_anguillarum_Listonella_anguillarum_M3 0
Vibrio_vulnificus_CMCP6 0
Vibrio_vulnificus_YJ016 0
Vibrio_cholerae_LMA3984-4 0
Vibrio_cholerae_M66-2 0
Vibrio_cholerae_O395 0
Vibrio_cholerae_IEC224 0
Vibrio_cholerae_O1_str._2010EL-1786 0
Vibrio_cholerae_MJ-1236 0
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 0
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 0
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Pongo_abelii_69_2   (Sumatran orangutan)   0
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_69_3   (Small-eared galago)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Rattus_norvegicus_69_3.4   (Norway rat)   0
Mus_musculus_69_38   (House mouse)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Ochotona_princeps_69   (American pika)   0
Sus_scrofa_69_10.2   (Pig)   0
Bos_taurus_69_3.1   (Cattle)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   0
Equus_caballus_69_2   (Horse)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Pteropus_vampyrus_69_1   (Large flying fox)   0
Loxodonta_africana_69_3   (African savanna elephant)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   0
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Anolis_carolinensis_69_2.0   (Green anole)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Danio_rerio_69_9   (Zebrafish)   0
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0
Drosophila_melanogaster_69_5   (Fruit fly)   0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Moniliophthora_perniciosa_FA553__(Genome_survey) 0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
NCBI_plasmid_sequences_(Plasmids) 0
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 8
STRING_v9.0.5_(STRING) 55
Uniprot_2018_03_genome 1152
NCBI_2017_08_genome 11459
PDB_chains_(SCOP_1.75)_(PDB) 1
Protozoadb_2010_08_(Protozoadb) 0
UniProt__viral_sequences_(Viral) 0
NCBI_viral_sequences_(Viral) 0
Protein_Data_Bank_(all_PDB_sequenc) 2
TargetDB__(Targets) 5

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]