SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 101936 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

101936 - DNA-binding pseudobarrel domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Sus_scrofa_76_10.2   (Pig)   0
Ovis_aries_76_3.1   (Sheep)   0
Pteropus_vampyrus_76_1   (Large flying fox)   0
Saccoglossus_kowalevskii_v3.0 0
Takifugu_rubripes_76_4   (Torafugu)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Poecilia_formosa_76   (Amazon molly)   0
Danio_rerio_76_9   (Zebrafish)   0
Oikopleura_dioica 0
Ciona_intestinalis_76   (Vase tunicate)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Crassostrea_gigas_22   (Pacific oyster)   0
Helobdella_robusta_ 0
Heliconius_melpomene_   (Postman butterfly)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Daphnia_pulex_   (Common water flea)   0
Strigamia_maritima_22 0
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Caenorhabditis_japonica_ 0
Trichinella_spiralis_22 0
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Trichoplax_adhaerens_ 0
Sphaeroforma_arctica_JP610_ 0
Mortierella_verticillata_NRRL_6337_ 0
Rhizopus_oryzae_RA_99-880_ 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Sphaerobolus_stellatus_v1.0 0
Scleroderma_citrinum_Foug_A_v1.0 0
Hebeloma_cylindrosporum_h7_v2.0 0
Laccaria_bicolor_S238N-H82_ 0
Agaricus_bisporus_var._bisporus_ 0
Cochliobolus_miyabeanus_ATCC_44560_v1.0 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Ajellomyces_dermatitidis_SLH14081_ 0
Trichophyton_rubrum_CBS_118892_ 0
Aspergillus_zonatus_v1.0 0
Aspergillus_oryzae_RIB40_ 0
Aspergillus_flavus_NRRL3357_ 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Babjeviella_inositovora_NRRL_Y-12698_v1.0 0
Pichia_pastoris_GS115_ 0
Saccharomyces_paradoxus_MIT 0
Saccharomyces_bayanus_MIT 0
Entamoeba_dispar_1.2 0
Selaginella_moellendorffii_ 14
Pinus_taeda   (Loblolly pine)   3
Picea_abies   (Norway spruce)   0
Eucalyptus_grandis_v201   (Rose gum)   33
Theobroma_cacao_B97-61/B2_v1   (Cacao)   39
Gossypium_raimondii_v221 34
Citrus_clementina_v165 18
Citrus_sinensis_v154   (Sweet orange)   12
Thellungiella_halophila_v173 22
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   15
Capsella_rubella_v183 24
Arabidopsis_lyrata_   (Lyrate rockcress)   21
Arabidopsis_thaliana_10   (Thale cress)   9
Carica_papaya_   (Papaya)   5
Medicago_truncatula_   (Barrel medic)   37
Phaseolus_vulgaris_v186   (French bean)   5
Glycine_max_v109   (Soybean)   12
Cucumis_sativus_v122   (Cucumber)   5
Fragaria_vesca_   (Wild strawberry)   15
Malus_domestica_v196   (Apple)   11
Prunus_persica_v139   (Peach)   25
Linum_usitatissimum_v200   (Flax)   24
Manihot_esculenta_v147   (Cassava)   35
Populus_trichocarpa_v156   (Black cottonwood)   71
Vitis_vinifera_   (Wine grape)   2
Mimulus_guttatus_v140   (Spotted monkey flower)   17
Solanum_lycopersicum_v.2.3   (Tomato)   13
Solanum_tuberosum_   (Potato)   28
Actinidia_chinensis_Hongyang_ 14
Aquilegia_coerulea_v195 14
Triticum_urartu_22 9
Triticum_aestivum_22   (Bread wheat)   31
Aegilops_tauschii_22 10
Brachypodium_distachyon_   (Stiff brome)   9
Oryza_barthii_22   (African wild rice)   5
Oryza_meridionalis_22 7
Oryza_glumaepatula_22 7
Oryza_glaberrima   (African rice)   7
Oryza_punctata_22 3
Oryza_nivara_22 7
Oryza_brachyantha_22   (Malo sina)   9
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   11
Oryza_sativa_v193   (Rice)   11
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   4
Panicum_virgatum_v202   (Switchgrass)   21
Setaria_italica_v164   (Foxtail millet)   6
Zea_mays_subsp._mays_   (Maize)   10
Zea_mays_v181   (Maize)   12
Sorghum_bicolor_   (Sorghum)   6
Musa_balbisiana   (Balbis banana)   1
Musa_acuminata_22   (Wild Malaysian banana)   5
Amborella_trichopoda_22 15
Physcomitrella_patens 7
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 1
Chlorella_vulgaris_ 0
Volvox_carteri_f._nagariensis_ 0
Chlamydomonas_reinhardtii_4.0 0
Micromonas_sp._RCC299_ 0
Micromonas_pusilla_CCMP1545_v3.0 0
Thecamonas_trahens_ATCC_50062_ 0
Cyanophora_paradoxa_ 0
Trypanosoma_cruzi_strain_CL_Brener 0
Albugo_laibachii_22 0
Phytophthora_sojae_1.1 0
Phytophthora_capsici_ 0
Fragilariopsis_cylindrus 0
Paramecium_tetraurelia_ 0
Tetrahymena_thermophila_SB210_1_ 0
Thermobifida_fusca_YX 0
Streptomyces_avermitilis_MA-4680 0
Streptomyces_scabiei_87.22 0
Xylanimonas_cellulosilytica_DSM_15894 0
[Cellvibrio]_gilvus_ATCC_13127 0
Meiothermus_ruber_DSM_1279 0
Desulfitobacterium_dehalogenans_ATCC_51507 0
Desulfotomaculum_ruminis_DSM_2154 0
Eubacterium_rectale_ATCC_33656 0
Clostridium_ljungdahlii_DSM_13528 0
Enterococcus_faecium_Aus0004 0
Pediococcus_claussenii_ATCC_BAA-344 0
Lactococcus_lactis_subsp._cremoris_MG1363 0
Paenibacillus_mucilaginosus_3016 0
Bacillus_thuringiensis_str._Al_Hakam 0
Bacillus_cereus_03BB102 0
Staphylococcus_aureus_subsp._aureus_JH1 0
Niastella_koreensis_GR20-10 0
Runella_slithyformis_DSM_19594 0
Tannerella_forsythia_ATCC_43037 0
Bacteroides_fragilis_YCH46 0
Robiginitalea_biformata_HTCC2501 0
Turneriella_parva_DSM_21527 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 0
Treponema_succinifaciens_DSM_2489 0
Sulfurospirillum_deleyianum_DSM_6946 0
Sulfurospirillum_barnesii_SES-3 0
Campylobacter_hominis_ATCC_BAA-381 0
Geobacter_lovleyi_SZ 1
Thauera_sp._MZ1T 0
Burkholderia_xenovorans_LB400 0
Cupriavidus_metallidurans_CH34 0
Ralstonia_pickettii_12D 0
Ralstonia_solanacearum_CFBP2957 0
Burkholderia_sp._RPE64 0
Burkholderia_ambifaria_AMMD 0
Burkholderia_multivorans_ATCC_17616 0
Burkholderia_gladioli_BSR3 0
Alicycliphilus_denitrificans_K601 0
Delftia_acidovorans_SPH-1 0
Polaromonas_naphthalenivorans_CJ2 0
Variovorax_paradoxus_S110 0
Acidovorax_ebreus_TPSY 0
Acidovorax_sp._KKS102 0
Acidovorax_sp._JS42 0
Acidovorax_citrulli_AAC00-1 0
Taylorella_asinigenitalis_MCE3 0
Taylorella_equigenitalis_MCE9 0
Bordetella_petrii_DSM_12804 0
Achromobacter_xylosoxidans 0
Sphingopyxis_alaskensis_RB2256 0
Acidiphilium_cryptum_JF-5 0
Aggregatibacter_actinomycetemcomitans_D7S-1 0
Shewanella_piezotolerans_WP3 0
Rhodanobacter_denitrificans 0
Pseudoxanthomonas_spadix_BD-a59 0
Spiribacter_sp._UAH-SP71 0
Thioalkalivibrio_sulfidophilus_HL-EbGr7 0
Halorhodospira_halophila_SL1 0
Xenorhabdus_bovienii_SS-2004 0
Proteus_mirabilis_HI4320 0
Edwardsiella_ictaluri_93-146 0
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 0
Serratia_sp._AS12 0
Serratia_plymuthica_AS9 0
Serratia_proteamaculans_568 0
Dickeya_zeae_Ech1591 0
Pectobacterium_wasabiae_WPP163 0
Erwinia_pyrifoliae_Ep1/96 0
Cronobacter_turicensis_z3032 0
Citrobacter_koseri_ATCC_BAA-895 0
Pseudomonas_aeruginosa_UCBPP-PA14 0
Acinetobacter_sp._ADP1 0
Thiomicrospira_crunogena_XCL-2 0
Francisella_tularensis_subsp._tularensis_WY96-3418 0
Candidatus_Nitrosopumilus_sp._AR2 0
Desulfurococcus_fermentans_DSM_16532 0
Desulfurococcus_mucosus_DSM_2162 0
Pyrobaculum_calidifontis_JCM_11548 0
Pyrobaculum_arsenaticum_DSM_13514 0
Pyrobaculum_oguniense_TE7 0
Pyrobaculum_islandicum_DSM_4184 0
Methanosaeta_concilii_GP6 0
Methanoplanus_petrolearius_DSM_11571 0
Pyrococcus_horikoshii_OT3 0
Pyrococcus_abyssi_GE5 0
Methanobrevibacter_sp._AbM4 0
Methanobrevibacter_ruminantium_M1 0

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Strains
Genome     Number
Ajellomyces_dermatitidis_ER-3_ 0
Histoplasma_capsulatum_H143 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   31
Hordeum_vulgare_22   (Domesticated barley)   27
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   6
Cyanothece_sp._PCC_7822 0
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 0
Streptomyces_davawensis_JCM_4913 0
Deinococcus_peraridilitoris_DSM_19664 0
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 0
Clostridium_autoethanogenum_DSM_10061 0
Enterococcus_faecium_Aus0085 0
Enterococcus_faecium_NRRL_B-2354 0
Enterococcus_faecium_DO 0
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 0
Lactococcus_lactis_subsp._lactis_IO-1 0
Lactococcus_lactis_subsp._lactis_CV56 0
Lactococcus_lactis_subsp._lactis_KF147 0
Lactococcus_lactis_subsp._lactis_Il1403 0
Lactococcus_lactis_subsp._cremoris_KW2 0
Lactococcus_lactis_subsp._cremoris_UC509.9 0
Lactococcus_lactis_subsp._cremoris_A76 0
Lactococcus_lactis_subsp._cremoris_NZ9000 0
Lactococcus_lactis_subsp._cremoris_SK11 0
Streptococcus_agalactiae_ILRI112 0
Streptococcus_agalactiae_ILRI005 0
Streptococcus_agalactiae_09mas018883 0
Streptococcus_agalactiae_SA20-06 0
Streptococcus_agalactiae_GD201008-001 0
Bacillus_toyonensis_BCT-7112 0
Bacillus_thuringiensis_HD-771 0
Bacillus_thuringiensis_HD-789 0
Bacillus_thuringiensis_serovar_konkukian_str._97-27 0
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 0
Bacillus_thuringiensis_BMB171 0
Bacillus_thuringiensis_serovar_finitimus_YBT-020 0
Bacillus_cereus_FRI-35 0
Bacillus_cereus_biovar_anthracis_str._CI 0
Bacillus_cereus_AH820 0
Bacillus_cereus_AH187 0
Bacillus_cereus_B4264 0
Bacillus_cereus_G9842 0
Bacillus_cereus_Q1 0
Bacillus_cereus_F837/76 0
Bacillus_cereus_NC7401 0
Bacillus_cereus_E33L 0
Bacillus_cereus_ATCC_14579 0
Bacillus_cereus_ATCC_10987 0
Staphylococcus_aureus_RF122 0
Staphylococcus_aureus_subsp._aureus_NCTC_8325 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 0
Leptospirillum_ferriphilum_ML-04 0
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 0
Neisseria_meningitidis_WUE_2594 0
Neisseria_meningitidis_M04-240196 0
Neisseria_meningitidis_M01-240149 0
Neisseria_meningitidis_NZ-05/33 0
Neisseria_meningitidis_053442 0
Neisseria_meningitidis_Z2491 0
Neisseria_meningitidis_H44/76 0
Neisseria_meningitidis_alpha710 0
Neisseria_meningitidis_MC58 0
Ralstonia_solanacearum_CMR15 0
Ralstonia_solanacearum_GMI1000 0
Burkholderia_pseudomallei_MSHR346 0
Burkholderia_multivorans_ATCC_17616 0
Variovorax_paradoxus_B4 0
Taylorella_asinigenitalis_14/45 0
Taylorella_equigenitalis_14/56 0
Taylorella_equigenitalis_ATCC_35865 0
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 0
Sinorhizobium_fredii_USDA_257 0
Mannheimia_succiniciproducens_MBEL55E 0
Stenotrophomonas_maltophilia_D457 0
Thioalkalivibrio_nitratireducens_DSM_14787 0
Proteus_mirabilis_BB2000 0
Serratia_sp._AS13 0
Serratia_plymuthica_4Rx13 0
Dickeya_dadantii_Ech586 0
Erwinia_pyrifoliae_DSM_12163 0
Cronobacter_sakazakii_CMCC_45402 0
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 0
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 0
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 0
Escherichia_coli_O7:K1_str._CE10 0
Escherichia_coli_IAI39 0
Pseudomonas_denitrificans_ATCC_13867 0
Pseudomonas_putida_HB3267 0
Pseudomonas_putida_DOT-T1E 0
Pseudomonas_putida_GB-1 1
Pseudomonas_poae_RE*1-1-14 0
Pseudomonas_aeruginosa_SCV20265 0
Pseudomonas_aeruginosa_PA7 0
Francisella_tularensis_subsp._mediasiatica_FSC147 0
Francisella_tularensis_subsp._holarctica_F92 0
Francisella_tularensis_subsp._holarctica_FTNF002-00 0
Francisella_tularensis_subsp._holarctica_OSU18 0
Francisella_tularensis_subsp._holarctica_LVS 0
Francisella_tularensis_subsp._holarctica_FSC200 0
Francisella_tularensis_subsp._tularensis_TIGB03 0
Francisella_tularensis_subsp._tularensis_TI0902 0
Francisella_tularensis_subsp._tularensis_NE061598 0
Francisella_tularensis_subsp._tularensis_FSC198 0
Francisella_tularensis_subsp._tularensis_SCHU_S4 0
Pyrococcus_sp._NA2 0

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Longest transcript per gene
Genome     Number
Tupaia_belangeri_69   (Northern tree shrew)   0
Sus_scrofa_69_10.2   (Pig)   0
Pteropus_vampyrus_69_1   (Large flying fox)   0
Takifugu_rubripes_69_4   (Torafugu)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Danio_rerio_69_9   (Zebrafish)   0
Ciona_intestinalis_69   (Vase tunicate)   0
Arabidopsis_thaliana_10   (Thale cress)   8

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Heliconius_numata__(Incomplete) 0
Loa_loa_v3.3_(Request)   (Eye worm)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
Lotus_japonicus__(Early_assembly) 26
Malus_x_domestica_(Duplicate)   (Apple)   11
Ricinus_communis__(Early_assembly)   (Castor bean)   11
Nicotiana_benthamiana_0.4.4_(Early_draft) 21
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   13
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   13
Phoenix_dactylifera__(Early_draft)   (Date palm)   5
NCBI_plasmid_sequences_(Plasmids) 3
Protein_Data_Bank_(all_PDB_sequenc) 9
NCBI_viral_sequences_(Viral) 0
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 28
Protozoadb_2010_08_(Protozoadb) 0
STRING_v9.0.5_(STRING) 163
Uniprot_2018_03_genome 1848
NCBI_2017_08_genome 1112
PDB_chains_(SCOP_1.75)_(PDB) 2
TargetDB__(Targets) 15
UniProt__viral_sequences_(Viral) 0

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