SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 101936,101936 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

101936 - DNA-binding pseudobarrel domain
101936 - DNA-binding pseudobarrel domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pinus_taeda   (Loblolly pine)   1
Eucalyptus_grandis_v201   (Rose gum)   6
Theobroma_cacao_B97-61/B2_v1   (Cacao)   4
Gossypium_raimondii_v221 8
Citrus_clementina_v165 5
Citrus_sinensis_v154   (Sweet orange)   6
Thellungiella_halophila_v173 12
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   37
Capsella_rubella_v183 9
Arabidopsis_lyrata_   (Lyrate rockcress)   19
Arabidopsis_thaliana_10   (Thale cress)   16
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   23
Phaseolus_vulgaris_v186   (French bean)   13
Glycine_max_v109   (Soybean)   5
Cucumis_sativus_v122   (Cucumber)   8
Fragaria_vesca_   (Wild strawberry)   18
Malus_domestica_v196   (Apple)   8
Prunus_persica_v139   (Peach)   11
Linum_usitatissimum_v200   (Flax)   14
Manihot_esculenta_v147   (Cassava)   11
Populus_trichocarpa_v156   (Black cottonwood)   2
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   11
Solanum_lycopersicum_v.2.3   (Tomato)   9
Solanum_tuberosum_   (Potato)   12
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 16
Triticum_urartu_22 3
Triticum_aestivum_22   (Bread wheat)   3
Aegilops_tauschii_22 5
Brachypodium_distachyon_   (Stiff brome)   2
Oryza_barthii_22   (African wild rice)   6
Oryza_meridionalis_22 4
Oryza_glumaepatula_22 6
Oryza_glaberrima   (African rice)   2
Oryza_punctata_22 4
Oryza_nivara_22 2
Oryza_brachyantha_22   (Malo sina)   2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   7
Oryza_sativa_v193   (Rice)   7
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Panicum_virgatum_v202   (Switchgrass)   12
Setaria_italica_v164   (Foxtail millet)   3
Zea_mays_subsp._mays_   (Maize)   2
Zea_mays_v181   (Maize)   2
Sorghum_bicolor_   (Sorghum)   6
Musa_balbisiana   (Balbis banana)   0
Physcomitrella_patens 0

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   3
Hordeum_vulgare_22   (Domesticated barley)   5
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   3

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   10

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 2
Malus_x_domestica_(Duplicate)   (Apple)   8
Ricinus_communis__(Early_assembly)   (Castor bean)   3
Nicotiana_benthamiana_0.4.4_(Early_draft) 9
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   9
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   9
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
TargetDB__(Targets) 7
STRING_v9.0.5_(STRING) 47
NCBI_2017_08_genome 789
Uniprot_2018_03_genome 1488

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