SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for 101936,101936,101936 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

101936 - DNA-binding pseudobarrel domain
101936 - DNA-binding pseudobarrel domain
101936 - DNA-binding pseudobarrel domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Eucalyptus_grandis_v201   (Rose gum)   4
Gossypium_raimondii_v221 3
Thellungiella_halophila_v173 7
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   6
Capsella_rubella_v183 5
Arabidopsis_lyrata_   (Lyrate rockcress)   5
Arabidopsis_thaliana_10   (Thale cress)   3
Carica_papaya_   (Papaya)   2
Medicago_truncatula_   (Barrel medic)   3
Phaseolus_vulgaris_v186   (French bean)   1
Cucumis_sativus_v122   (Cucumber)   1
Fragaria_vesca_   (Wild strawberry)   3
Malus_domestica_v196   (Apple)   0
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   6
Manihot_esculenta_v147   (Cassava)   0
Vitis_vinifera_   (Wine grape)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   2
Solanum_lycopersicum_v.2.3   (Tomato)   3
Solanum_tuberosum_   (Potato)   8
Actinidia_chinensis_Hongyang_ 3
Aquilegia_coerulea_v195 3
Triticum_urartu_22 1
Triticum_aestivum_22   (Bread wheat)   2
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   1
Oryza_meridionalis_22 2
Oryza_glumaepatula_22 1
Oryza_glaberrima   (African rice)   1
Oryza_punctata_22 4
Oryza_nivara_22 3
Oryza_brachyantha_22   (Malo sina)   2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2
Oryza_sativa_v193   (Rice)   2
Panicum_virgatum_v202   (Switchgrass)   6
Setaria_italica_v164   (Foxtail millet)   6
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Sorghum_bicolor_   (Sorghum)   2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   2

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   0
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 5
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   3
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3
Phoenix_dactylifera__(Early_draft)   (Date palm)   0
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 12
Uniprot_2018_03_genome 753
NCBI_2017_08_genome 326

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]