SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 101936,52980 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

101936 - DNA-binding pseudobarrel domain
52980 - Restriction endonuclease-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Eubacterium_rectale_ATCC_33656 1
Bacteroides_fragilis_YCH46 1
Treponema_succinifaciens_DSM_2489 1
Acidiphilium_cryptum_JF-5 1
Edwardsiella_ictaluri_93-146 1
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1
Serratia_proteamaculans_568 1
Erwinia_pyrifoliae_Ep1/96 1
Citrobacter_koseri_ATCC_BAA-895 1

Strains
Genome     Number
Leptospirillum_ferriphilum_ML-04 1
Neisseria_meningitidis_WUE_2594 1
Neisseria_meningitidis_M04-240196 1
Neisseria_meningitidis_M01-240149 1
Neisseria_meningitidis_NZ-05/33 1
Neisseria_meningitidis_053442 1
Neisseria_meningitidis_Z2491 1
Neisseria_meningitidis_H44/76 1
Neisseria_meningitidis_alpha710 1
Neisseria_meningitidis_MC58 1
Erwinia_pyrifoliae_DSM_12163 1
Cronobacter_sakazakii_CMCC_45402 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 1
Escherichia_coli_O7:K1_str._CE10 1
Escherichia_coli_IAI39 1

Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 30
Protein_Data_Bank_(all_PDB_sequenc) 2
STRING_v9.0.5_(STRING) 14
Uniprot_2018_03_genome 1035
NCBI_2017_08_genome 3653
PDB_chains_(SCOP_1.75)_(PDB) 1

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