SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for 101936,_gap_,101936 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

101936 - DNA-binding pseudobarrel domain
101936 - DNA-binding pseudobarrel domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Selaginella_moellendorffii_ 1
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   0
Eucalyptus_grandis_v201   (Rose gum)   8
Theobroma_cacao_B97-61/B2_v1   (Cacao)   8
Gossypium_raimondii_v221 25
Citrus_clementina_v165 14
Citrus_sinensis_v154   (Sweet orange)   13
Thellungiella_halophila_v173 6
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   7
Capsella_rubella_v183 7
Arabidopsis_lyrata_   (Lyrate rockcress)   6
Arabidopsis_thaliana_10   (Thale cress)   9
Carica_papaya_   (Papaya)   4
Medicago_truncatula_   (Barrel medic)   20
Phaseolus_vulgaris_v186   (French bean)   9
Glycine_max_v109   (Soybean)   17
Cucumis_sativus_v122   (Cucumber)   4
Fragaria_vesca_   (Wild strawberry)   3
Malus_domestica_v196   (Apple)   4
Prunus_persica_v139   (Peach)   8
Linum_usitatissimum_v200   (Flax)   18
Manihot_esculenta_v147   (Cassava)   14
Populus_trichocarpa_v156   (Black cottonwood)   7
Vitis_vinifera_   (Wine grape)   3
Mimulus_guttatus_v140   (Spotted monkey flower)   2
Solanum_lycopersicum_v.2.3   (Tomato)   15
Solanum_tuberosum_   (Potato)   15
Actinidia_chinensis_Hongyang_ 9
Aquilegia_coerulea_v195 6
Triticum_urartu_22 8
Triticum_aestivum_22   (Bread wheat)   4
Aegilops_tauschii_22 8
Brachypodium_distachyon_   (Stiff brome)   2
Oryza_barthii_22   (African wild rice)   8
Oryza_meridionalis_22 7
Oryza_glumaepatula_22 5
Oryza_glaberrima   (African rice)   6
Oryza_punctata_22 8
Oryza_nivara_22 9
Oryza_brachyantha_22   (Malo sina)   3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   8
Oryza_sativa_v193   (Rice)   8
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   3
Panicum_virgatum_v202   (Switchgrass)   19
Setaria_italica_v164   (Foxtail millet)   9
Zea_mays_subsp._mays_   (Maize)   5
Zea_mays_v181   (Maize)   5
Sorghum_bicolor_   (Sorghum)   11
Musa_balbisiana   (Balbis banana)   3
Musa_acuminata_22   (Wild Malaysian banana)   2
Amborella_trichopoda_22 5
Physcomitrella_patens 4

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   8
Hordeum_vulgare_22   (Domesticated barley)   6
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   9

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   9

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 3
Malus_x_domestica_(Duplicate)   (Apple)   4
Ricinus_communis__(Early_assembly)   (Castor bean)   4
Nicotiana_benthamiana_0.4.4_(Early_draft) 5
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   15
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   15
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
STRING_v9.0.5_(STRING) 53
NCBI_2017_08_genome 1036
Uniprot_2018_03_genome 4330
TargetDB__(Targets) 3

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]