SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 143880 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

143880 - NE0471 N-terminal domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Drosophila_yakuba_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Strigamia_maritima_22 0
Trichoplax_adhaerens_ 0
Rhizopus_oryzae_RA_99-880_ 0
Melampsora_laricis-populina_ 0
Entamoeba_invadens_1.2 0
Malus_domestica_v196   (Apple)   0
Actinidia_chinensis_Hongyang_ 0
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   0
Panicum_virgatum_v202   (Switchgrass)   0
Trypanosoma_cruzi_strain_CL_Brener 0
Trypanosoma_congolense_2.4 0
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Cryptosporidium_hominis 0
Plasmodium_vivax_SaI-1_7.0 0
Symbiodinium_minutum_clade_B1_v1.2 0
Synechocystis_sp._PCC_6803 2
Synechococcus_sp._PCC_6312 2
Synechococcus_elongatus_PCC_7942 1
Trichodesmium_erythraeum_IMS101 1
Microcystis_aeruginosa_NIES-843 4
Nostoc_sp._PCC_7107 1
Eggerthella_lenta_DSM_2243 1
Slackia_heliotrinireducens_DSM_20476 1
Ilumatobacter_coccineus 0
Acidimicrobium_ferrooxidans_DSM_10331 0
Microlunatus_phosphovorus_NM-1 1
Mycobacterium_vanbaalenii_PYR-1 0
Arthrobacter_sp._FB24 0
Bifidobacterium_dentium_Bd1 0
Bifidobacterium_bifidum_S17 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1
Roseiflexus_sp._RS-1 2
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aurantiacus_J-10-fl 1
Truepera_radiovictrix_DSM_17093 1
Deinococcus_gobiensis_I-0 0
Deinococcus_proteolyticus_MRP 0
Selenomonas_sputigena_ATCC_35185 3
Ruminococcus_albus_7 0
Sulfobacillus_acidophilus_DSM_10332 1
Desulfosporosinus_orientis_DSM_765 4
Syntrophobotulus_glycolicus_DSM_8271 1
Desulfitobacterium_hafniense_Y51 1
Desulfotomaculum_acetoxidans_DSM_771 1
Desulfotomaculum_kuznetsovii_DSM_6115 2
Acetobacterium_woodii_DSM_1030 1
Clostridium_saccharolyticum_WM1 1
Clostridium_lentocellum_DSM_5427 0
Eubacterium_rectale_M104/1 2
Eubacterium_rectale_ATCC_33656 2
Coprococcus_sp._ART55/1 1
Roseburia_hominis_A2-183 1
Butyrivibrio_fibrisolvens 2
Syntrophothermus_lipocalidus_DSM_12680 1
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 2
Alkaliphilus_metalliredigens_QYMF 1
Candidatus_Arthromitus_sp._SFB-mouse-Japan 3
Clostridium_sp._BNL1100 0
Clostridium_novyi_NT 1
Clostridium_ljungdahlii_DSM_13528 1
Clostridium_tetani_E88 0
Caldicellulosiruptor_obsidiansis_OB47 1
Caldicellulosiruptor_kronotskyensis_2002 1
Caldicellulosiruptor_hydrothermalis_108 1
Caldicellulosiruptor_owensensis_OL 1
Caldicellulosiruptor_lactoaceticus_6A 1
Caldicellulosiruptor_kristjanssonii_177R1B 1
Caldicellulosiruptor_saccharolyticus_DSM_8903 1
Caldicellulosiruptor_bescii_DSM_6725 1
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 1
Moorella_thermoacetica_ATCC_39073 2
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 1
Thermoanaerobacter_pseudethanolicus_ATCC_33223 1
Thermoanaerobacter_italicus_Ab9 1
Thermoanaerobacter_wiegelii_Rt8.B1 1
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 1
Lactococcus_lactis_subsp._cremoris_MG1363 0
Pelodictyon_phaeoclathratiforme_BU-1 9
Chlorobium_chlorochromatii_CaD3 7
Chlorobium_phaeobacteroides_DSM_266 6
Chlorobium_limicola_DSM_245 3
Chlorobaculum_parvum_NCIB_8327 1
Chlorobium_tepidum_TLS 1
Chloroherpeton_thalassium_ATCC_35110 2
Haliscomenobacter_hydrossis_DSM_1100 2
Flexibacter_litoralis_DSM_6794 0
Cyclobacterium_marinum_DSM_745 2
Marivirga_tractuosa_DSM_4126 1
Fibrella_aestuarina 0
Dyadobacter_fermentans_DSM_18053 2
Spirosoma_linguale_DSM_74 3
Parabacteroides_distasonis_ATCC_8503 1
Prevotella_ruminicola_23 0
Pedobacter_heparinus_DSM_2366 0
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 0
Capnocytophaga_ochracea_DSM_7271 0
Fibrobacter_succinogenes_subsp._succinogenes_S85 2
Waddlia_chondrophila_WSU_86-1044 0
Parachlamydia_acanthamoebae_UV-7 0
Pirellula_staleyi_DSM_6068 0
Turneriella_parva_DSM_21527 1
Brachyspira_intermedia_PWS/A 1
Brachyspira_hyodysenteriae_WA1 1
Spirochaeta_smaragdinae_DSM_11293 1
Treponema_primitia_ZAS-2 1
Spirochaeta_thermophila_DSM_6192 0
Thermodesulfatator_indicus_DSM_15286 1
Mesotoga_prima_MesG1.Ag.4.2 1
Candidatus_Solibacter_usitatus_Ellin6076 0
Granulicella_tundricola_MP5ACTX9 0
Granulicella_mallensis_MP5ACTX8 0
Leptospirillum_ferrooxidans_C2-3 0
Candidatus_Methylomirabilis_oxyfera 2
Acidithiobacillus_ferrivorans_SS3 1
Acidithiobacillus_caldus_SM-1 1
Acidithiobacillus_ferrooxidans_ATCC_53993 1
Nitratifractor_salsuginis_DSM_16511 0
uncultured_Sulfuricurvum_sp._RIFRC-1 1
Nitratiruptor_sp._SB155-2 0
Desulfomonile_tiedjei_DSM_6799 0
Desulfobacterium_autotrophicum_HRM2 2
Desulfococcus_oleovorans_Hxd3 1
Desulfomicrobium_baculatum_DSM_4028 1
Desulfovibrio_magneticus_RS-1 1
Desulfovibrio_salexigens_DSM_2638 0
Geobacter_sp._M21 1
Geobacter_uraniireducens_Rf4 4
Geobacter_lovleyi_SZ 1
Geobacter_bemidjiensis_Bem 1
Geobacter_metallireducens_GS-15 1
Haliangium_ochraceum_DSM_14365 0
Stigmatella_aurantiaca_DW4/3-1 0
Corallococcus_coralloides_DSM_2259 0
Myxococcus_xanthus_DK_1622 0
Myxococcus_fulvus_HW-1 0
Aromatoleum_aromaticum_EbN1 0
Pseudogulbenkiania_sp._NH8B 1
Laribacter_hongkongensis_HLHK9 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 3
Cupriavidus_taiwanensis_LMG_19424 0
Cupriavidus_metallidurans_CH34 0
Ralstonia_eutropha_H16 0
Verminephrobacter_eiseniae_EF01-2 1
Herbaspirillum_seropedicae_SmR1 1
Nitrosomonas_sp._Is79A3 0
Nitrosomonas_europaea_ATCC_19718 0
Gallionella_capsiferriformans_ES-2 4
Methylobacillus_flagellatus_KT 0
Magnetococcus_marinus_MC-1 0
Caulobacter_sp._K31 1
Hirschia_baltica_ATCC_49814 0
Hyphomonas_neptunium_ATCC_15444 0
Dinoroseobacter_shibae_DFL_12 0
Magnetospirillum_magneticum_AMB-1 1
Rhodospirillum_rubrum_F11 1
Azospirillum_lipoferum_4B 2
Azospirillum_sp._B510 0
Acidiphilium_cryptum_JF-5 1
Polymorphum_gilvum_SL003B-26A1 0
Candidatus_Puniceispirillum_marinum_IMCC1322 0
alpha_proteobacterium_HIMB59 0
Rickettsia_canadensis_str._McKiel 0
Rickettsia_felis_URRWXCal2 1
Xanthobacter_autotrophicus_Py2 0
Methylobacterium_sp._4-46 0
Methylobacterium_populi_BJ001 0
Methylobacterium_radiotolerans_JCM_2831 0
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 0
Rhodopseudomonas_palustris_BisA53 1
Nitrobacter_winogradskyi_Nb-255 0
Oceanimonas_sp._GK1 0
Aeromonas_veronii_B565 1
Aeromonas_salmonicida_subsp._salmonicida_A449 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1
Aliivibrio_salmonicida_LFI1238 0
Vibrio_harveyi_ATCC_BAA-1116 0
Vibrio_cholerae_O395 0
Shewanella_woodyi_ATCC_51908 0
Shewanella_sp._MR-4 0
Shewanella_putrefaciens_CN-32 0
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1
Marinobacter_aquaeolei_VT8 1
Alteromonas_sp._SN2 0
Alteromonas_macleodii_str._'Deep_ecotype' 1
Hahella_chejuensis_KCTC_2396 0
Marinomonas_sp._MWYL1 0
Methylomicrobium_alcaliphilum 3
Methylomonas_methanica_MC09 0
Halothiobacillus_neapolitanus_c2 1
Alkalilimnicola_ehrlichii_MLHE-1 0
Thioalkalivibrio_sp._K90mix 0
Allochromatium_vinosum_DSM_180 1
Thiocystis_violascens_DSM_198 7
Nitrosococcus_halophilus_Nc4 4
Photorhabdus_luminescens_subsp._laumondii_TTO1 1
Edwardsiella_ictaluri_93-146 0
Edwardsiella_tarda_EIB202 0
Dickeya_zeae_Ech1591 0
Azotobacter_vinelandii_DJ 0
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 0
Acinetobacter_baumannii_ATCC_17978 0
Thioalkalimicrobium_cyclicum_ALM1 1
Methanosarcina_barkeri_str._Fusaro 0
Methanocaldococcus_fervens_AG86 0

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Hordeum_vulgare_22   (Domesticated barley)   0
Trypanosoma_brucei_Lister_427_v4.1 0
Synechocystis_sp._PCC_6803_substr._PCC-P 2
Synechocystis_sp._PCC_6803_substr._PCC-N 2
Synechocystis_sp._PCC_6803_substr._GT-I 2
Synechocystis_sp._PCC_6803 2
Dactylococcopsis_salina_PCC_8305 1
Synechococcus_elongatus_PCC_6301 1
Crinalium_epipsammum_PCC_9333 1
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 1
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7425 1
Cyanothece_sp._PCC_7424 1
Cyanobacterium_stanieri_PCC_7202 1
Anabaena_cylindrica_PCC_7122 0
Gordonibacter_pamelaeae_7-10-1-b 1
Mycobacterium_sp._JDM601 0
Bifidobacterium_longum_subsp._infantis_157F 1
Bifidobacterium_bifidum_PRL2010 1
Bifidobacterium_bifidum_BGN4 1
Actinomyces_viscosus_C505 0
Thermus_oshimai_JL-2 1
Faecalibacterium_prausnitzii_L2-6 1
Ruminococcus_champanellensis_18P13 1
Sulfobacillus_acidophilus_TPY 1
Desulfosporosinus_meridiei_DSM_13257 1
Desulfitobacterium_dichloroeliminans_LMG_P-21439 1
Desulfitobacterium_hafniense_DCB-2 1
Desulfotomaculum_gibsoniae_DSM_7213 2
Candidatus_Arthromitus_sp._SFB-rat-Yit 1
Candidatus_Arthromitus_sp._SFB-mouse-Yit 3
Clostridium_autoethanogenum_DSM_10061 2
Clostridium_tetani_genome_12124569 1
Lactobacillus_plantarum_16 0
Lactobacillus_plantarum_subsp._plantarum_P-8 0
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 0
Lactococcus_lactis_subsp._lactis_IO-1 0
Lactococcus_lactis_subsp._lactis_CV56 0
Lactococcus_lactis_subsp._lactis_KF147 0
Lactococcus_lactis_subsp._lactis_Il1403 0
Lactococcus_lactis_subsp._cremoris_KW2 0
Lactococcus_lactis_subsp._cremoris_UC509.9 0
Lactococcus_lactis_subsp._cremoris_A76 0
Lactococcus_lactis_subsp._cremoris_NZ9000 0
Lactococcus_lactis_subsp._cremoris_SK11 0
Bacillus_thuringiensis_MC28 0
Echinicola_vietnamensis_DSM_17526 1
Riemerella_anatipestifer_RA-CH-2 0
Riemerella_anatipestifer_RA-CH-1 0
Riemerella_anatipestifer_RA-GD 0
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 0
Fibrobacter_succinogenes_subsp._succinogenes_S85 2
Leptospirillum_ferriphilum_ML-04 0
Acidithiobacillus_ferrooxidans_ATCC_23270 1
Desulfobacula_toluolica_Tol2 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1
Geobacter_sp._M18 2
Myxococcus_stipitatus_DSM_14675 0
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 5
Alicycliphilus_denitrificans_BC 0
Sulfuricella_denitrificans_skB26 0
Octadecabacter_arcticus_238 0
Magnetospirillum_gryphiswaldense_MSR-1_v2 0
Rhodospirillum_rubrum_ATCC_11170 1
Rhizobium_tropici_CIAT_899 0
Rhodopseudomonas_palustris_BisB5 1
Rhodopseudomonas_palustris_BisB18 1
Pasteurella_multocida_36950 0
Aeromonas_hydrophila_ML09-119 1
Vibrio_cholerae_LMA3984-4 0
Vibrio_cholerae_M66-2 0
Vibrio_cholerae_O395 0
Vibrio_cholerae_IEC224 0
Vibrio_cholerae_O1_str._2010EL-1786 0
Vibrio_cholerae_MJ-1236 0
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 0
Shewanella_sp._W3-18-1 0
Shewanella_sp._ANA-3 0
Shewanella_sp._MR-7 0
Shewanella_putrefaciens_200 0
Spiribacter_salinus_M19-40 0
Thioalkalivibrio_nitratireducens_DSM_14787 0
Thioflavicoccus_mobilis_8321 2
Legionella_pneumophila_subsp._pneumophila 1
Dickeya_dadantii_Ech586 0
Dickeya_dadantii_3937 0
Azotobacter_vinelandii_CA6 0
Azotobacter_vinelandii_CA 0
Pseudomonas_syringae_pv._phaseolicola_1448A 0
Pseudomonas_syringae_pv._syringae_B728a 0
Pseudomonas_putida_NBRC_14164 0
Pseudomonas_putida_DOT-T1E 0
Pseudomonas_poae_RE*1-1-14 0
Pseudomonas_fluorescens_F113 0
Pseudomonas_fluorescens_Pf0-1 0
Acinetobacter_baumannii_ACICU 0
Acinetobacter_lwoffii__SH145 0

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Longest transcript per gene
Genome     Number
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0
Drosophila_melanogaster_69_5   (Fruit fly)   0

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   0
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 0
NCBI_plasmid_sequences_(Plasmids) 7
Protozoadb_2010_08_(Protozoadb) 0
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 6
STRING_v9.0.5_(STRING) 100
PDB_chains_(SCOP_1.75)_(PDB) 0
Uniprot_2018_03_genome 2353
NCBI_2017_08_genome 2564
Protein_Data_Bank_(all_PDB_sequenc) 0
TargetDB__(Targets) 2

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