SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 144256 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

144256 - TSP9-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Mus_musculus_76_38   (House mouse)   0
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Canis_familiaris_76_3.1   (Dog)   0
Felis_catus_76_6.2   (Domestic cat)   0
Loxodonta_africana_76_3   (African savanna elephant)   0
Danio_rerio_76_9   (Zebrafish)   0
Crassostrea_gigas_22   (Pacific oyster)   0
Helobdella_robusta_ 0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Drosophila_grimshawi_1.3 0
Drosophila_ananassae_1.3 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Strigamia_maritima_22 0
Caenorhabditis_brenneri_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Sphaeroforma_arctica_JP610_ 0
Wallemia_sebi_v1.0 0
Piloderma_croceum_F_1598_v1.0 0
Pleurotus_ostreatus_   (Oyster mushroom)   0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Hebeloma_cylindrosporum_h7_v2.0 0
Punctularia_strigosozonata_v1.0 0
Apiospora_montagnei_NRRL_25634_v1.0 0
Nectria_haematococca_mpVI_ 0
Trichoderma_atroviride_ 0
Trichoderma_citrinoviride_v1.0 0
Trichoderma_reesei_1.2 0
Trichoderma_virens_Gv29-8_ 0
Trichoderma_longibrachiatum_ATCC_18648_v1.0 0
Trichoderma_harzianum_CBS_226.95_v1.0 0
Blumeria_graminis_22 0
Stagonospora_nodorum_ 0
Paracoccidioides_brasiliensis_Pb18_ 0
Trichophyton_tonsurans_CBS_112818_ 0
Aspergillus_terreus_NIH2624_ 0
Aspergillus_niger_22 0
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Picea_abies   (Norway spruce)   2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 2
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   1
Thellungiella_halophila_v173 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   3
Capsella_rubella_v183 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1
Arabidopsis_thaliana_10   (Thale cress)   1
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   2
Phaseolus_vulgaris_v186   (French bean)   1
Glycine_max_v109   (Soybean)   1
Cucumis_sativus_v122   (Cucumber)   1
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   1
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   4
Manihot_esculenta_v147   (Cassava)   2
Populus_trichocarpa_v156   (Black cottonwood)   2
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   2
Actinidia_chinensis_Hongyang_ 0
Aquilegia_coerulea_v195 1
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   2
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   1
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 2
Oryza_glaberrima   (African rice)   1
Oryza_punctata_22 1
Oryza_nivara_22 1
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1
Oryza_sativa_v193   (Rice)   1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2
Panicum_virgatum_v202   (Switchgrass)   1
Setaria_italica_v164   (Foxtail millet)   1
Zea_mays_subsp._mays_   (Maize)   7
Zea_mays_v181   (Maize)   6
Sorghum_bicolor_   (Sorghum)   1
Musa_balbisiana   (Balbis banana)   2
Musa_acuminata_22   (Wild Malaysian banana)   1
Amborella_trichopoda_22 1
Chlorella_variabilis_sp._NC64A_ 0
Ostreococcus_tauri_ 0
Bathycoccus_prasinos_ 0
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Hyaloperonospora_arabidopsidis_22 0
Fragilariopsis_cylindrus 0
Symbiodinium_minutum_clade_B1_v1.2 0
Microcoleus_sp._PCC_7113 0
Cyanothece_sp._PCC_8802 0
Anabaena_variabilis_ATCC_29413 0
'Nostoc_azollae'_0708 0
Nostoc_sp._PCC_7107 0
Nostoc_sp._PCC_7120 0
Geodermatophilus_obscurus_DSM_43160 0
Microlunatus_phosphovorus_NM-1 0
Chloroflexus_sp._MS-G 0
Chloroflexus_aggregans_DSM_9485 0
Clostridium_ljungdahlii_DSM_13528 0
Phycisphaera_mikurensis_NBRC_102666 0
Helicobacter_pylori_B38 0
Methanoregula_boonei_6A8 0
Methanoplanus_petrolearius_DSM_11571 0
Haloquadratum_walsbyi_DSM_16790 0
Haloferax_volcanii_DS2 0

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Strains
Genome     Number
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Paracoccidioides_brasiliensis_Pb01_ 0
Paracoccidioides_brasiliensis_Pb03_ 0
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_PW5 0
Saccharomyces_cerevisiae_CLIB382 0
Saccharomyces_cerevisiae_CLIB324 0
Saccharomyces_cerevisiae_CBS7960 0
Saccharomyces_cerevisiae_YJM269 0
Saccharomyces_cerevisiae_T7 0
Saccharomyces_cerevisiae_FostersB 0
Saccharomyces_cerevisiae_VL3 0
Saccharomyces_cerevisiae_Vin13 0
Saccharomyces_cerevisiae_LalvinQA23 0
Saccharomyces_cerevisiae_AWRI796 0
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_W303 0
Saccharomyces_cerevisiae_JAY291 0
Saccharomyces_cerevisiae_AWRI1631 0
Saccharomyces_cerevisiae_YPS163 0
Saccharomyces_cerevisiae_M22 0
Saccharomyces_cerevisiae_T73 0
Saccharomyces_cerevisiae_CLIB215 0
Saccharomyces_cerevisiae_Y10 0
Saccharomyces_cerevisiae_YJM789_ 0
Saccharomyces_cerevisiae_YJM789 0
Saccharomyces_cerevisiae_RM11-1a 0
Saccharomyces_cerevisiae_RM11-1a_ 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1
Trypanosoma_brucei_Lister_427_v4.1 0
Chroococcidiopsis_thermalis_PCC_7203 0
Crinalium_epipsammum_PCC_9333 0
Cyanothece_sp._PCC_8801 0
Stanieria_cyanosphaera_PCC_7437 0
Calothrix_parietina_Calothrix_sp._PCC_6303 0
Cylindrospermum_stagnale_PCC_7417 0
Corynebacterium_diphtheriae_INCA_402 0
Corynebacterium_diphtheriae_C7_(beta) 0
Clostridium_autoethanogenum_DSM_10061 0
Bacillus_cereus_AH187 0
Bacillus_cereus_NC7401 0
Helicobacter_pylori_Gambia94/24 0
Helicobacter_pylori_Lithuania75 0
Taylorella_asinigenitalis_14/45 0
Pseudomonas_fluorescens_R124 0

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Longest transcript per gene
Genome     Number
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Loxodonta_africana_69_3   (African savanna elephant)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0
Arabidopsis_thaliana_10   (Thale cress)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Lotus_japonicus__(Early_assembly) 0
Malus_x_domestica_(Duplicate)   (Apple)   1
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 4
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
NCBI_plasmid_sequences_(Plasmids) 0
TargetDB__(Targets) 3
STRING_v9.0.5_(STRING) 9
NCBI_2017_08_genome 119
Uniprot_2018_03_genome 126
PDB_chains_(SCOP_1.75)_(PDB) 1
Protozoadb_2010_08_(Protozoadb) 0
Protein_Data_Bank_(all_PDB_sequenc) 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 2

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