SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 158568 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

158568 - AF1862-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Crassostrea_gigas_22   (Pacific oyster)   0
Helobdella_robusta_ 0
Linepithema_humile_v1.1   (Argentine ant)   0
Drosophila_persimilis_1.3 0
Rhodnius_prolixus_22 0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Caenorhabditis_remanei_ 0
Trichinella_spiralis_22 0
Capsaspora_owczarzaki_ATCC_30864_ 0
Rhizopus_oryzae_RA_99-880_ 0
Tremella_mesenterica_   (Witches' butter)   0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Fusarium_verticillioides_7600_ 0
Neosartorya_fischeri_NRRL_181_ 0
Aspergillus_tubingensis_v1.0 0
Hansenula_polymorpha_v2.0 0
Candida_parapsilosis_ 0
Debaromyces_hansenii 0
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Kluyveromyces_thermotolerans_CBS_6340 0
Dictyostelium_purpureum_ 0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   0
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glaberrima   (African rice)   0
Oryza_nivara_22 0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Setaria_italica_v164   (Foxtail millet)   0
Musa_balbisiana   (Balbis banana)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Bigelowiella_natans_CCMP2755_22 0
Cyanophora_paradoxa_ 0
Pythium_ultimum_v1.7-2 0
Phytophthora_infestans_T30-4_ 0
Paramecium_tetraurelia_ 0
Tetrahymena_thermophila_SB210_1_ 0
Symbiodinium_minutum_clade_B1_v1.2 0
Guillardia_theta_CCMP2712_v1.0_ 0
Thermobaculum_terrenum_ATCC_BAA-798 1
Mycoplasma_penetrans_HF-2 0
Rubrobacter_xylanophilus_DSM_9941 1
Thermobifida_fusca_YX 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1
Anaerolinea_thermophila_UNI-1 1
Thermomicrobium_roseum_DSM_5159 1
Herpetosiphon_aurantiacus_DSM_785 2
Roseiflexus_sp._RS-1 0
Roseiflexus_castenholzii_DSM_13941 0
Chloroflexus_sp._MS-G 0
Chloroflexus_aggregans_DSM_9485 0
Truepera_radiovictrix_DSM_17093 2
Deinococcus_geothermalis_DSM_11300 1
Marinithermus_hydrothermalis_DSM_14884 1
Meiothermus_silvanus_DSM_9946 1
Meiothermus_ruber_DSM_1279 1
Thermus_sp._CCB_US3_UF1 1
Thermus_thermophilus_HB27 1
Finegoldia_magna_ATCC_29328 0
Symbiobacterium_thermophilum_IAM_14863 0
Clostridium_clariflavum_DSM_19732 0
Clostridium_cellulolyticum_H10 0
Ruminococcus_bromii 0
butyrate-producing_bacterium_SS3/4 0
Candidatus_Desulforudis_audaxviator_MP104C 1
Pelotomaculum_thermopropionicum_SI 1
Syntrophobotulus_glycolicus_DSM_8271 1
Desulfotomaculum_acetoxidans_DSM_771 1
Desulfotomaculum_kuznetsovii_DSM_6115 1
Desulfotomaculum_ruminis_DSM_2154 0
Syntrophothermus_lipocalidus_DSM_12680 1
Clostridium_sp._BNL1100 0
Clostridium_beijerinckii_NCIMB_8052 0
Clostridium_perfringens_ATCC_13124 0
Clostridium_botulinum_A_str._ATCC_3502 1
Clostridium_acetobutylicum_ATCC_824 0
Caldicellulosiruptor_obsidiansis_OB47 1
Caldicellulosiruptor_kronotskyensis_2002 1
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 0
Tepidanaerobacter_acetatoxydans_Re1 0
Thermoanaerobacter_tengcongensis_MB4 1
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 1
Thermoanaerobacter_italicus_Ab9 1
Halothermothrix_orenii_H_168 1
Oenococcus_oeni_PSU-1 0
Lactobacillus_brevis_ATCC_367 0
Kyrpidia_tusciae_DSM_2912 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 1
Paenibacillus_terrae_HPL-003 1
Geobacillus_thermoglucosidasius_C56-YS93 1
Geobacillus_sp._GHH01 1
Geobacillus_sp._WCH70 1
Geobacillus_thermodenitrificans_NG80-2 0
Bacillus_halodurans_C-125 1
Staphylococcus_carnosus_subsp._carnosus_TM300 0
Chloroherpeton_thalassium_ATCC_35110 1
Prosthecochloris_aestuarii_DSM_271 0
Haliscomenobacter_hydrossis_DSM_1100 1
Flexibacter_litoralis_DSM_6794 1
Spirosoma_linguale_DSM_74 0
Porphyromonas_gingivalis_ATCC_33277 1
Flavobacterium_johnsoniae_UW101 0
Waddlia_chondrophila_WSU_86-1044 0
Isosphaera_pallida_ATCC_43644 1
Fretibacterium_fastidiosum 1
Anaerobaculum_mobile_DSM_13181 1
Brachyspira_pilosicoli_95/1000 0
Borrelia_burgdorferi_B31 0
Borrelia_duttonii_Ly 0
Borrelia_crocidurae_str._Achema 0
Borrelia_hermsii_DAH 0
Treponema_azotonutricium_ZAS-9 1
Thermodesulfatator_indicus_DSM_15286 1
Flexistipes_sinusarabici_DSM_4947 1
Marinitoga_piezophila_KA3 1
Mesotoga_prima_MesG1.Ag.4.2 1
Fervidobacterium_pennivorans_DSM_9078 1
Thermosipho_melanesiensis_BI429 1
Thermosipho_africanus_TCF52B 1
Thermotoga_thermarum_DSM_5069 1
Thermotoga_sp._RQ2 1
Thermotoga_naphthophila_RKU-10 0
Thermovibrio_ammonificans_HB-1 0
Sulfurihydrogenibium_sp._YO3AOP1 1
Hydrogenobaculum_sp._SN 0
Hydrogenobaculum_sp._HO 0
Hydrogenobaculum_sp._Y04AAS1 0
Thermocrinis_albus_DSM_14484 1
Aquifex_aeolicus_VF5 1
Elusimicrobium_minutum_Pei191 0
Candidatus_Chloracidobacterium_thermophilum_B 2
Arcobacter_nitrofigilis_DSM_7299 0
Syntrophus_aciditrophicus_SB 1
Hippea_maritima_DSM_10411 0
Pelobacter_propionicus_DSM_2379 0
Haliangium_ochraceum_DSM_14365 1
Sorangium_cellulosum_'So_ce_56' 1
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1
Burkholderia_rhizoxinica_HKI_454 0
Ralstonia_pickettii_12D 0
Taylorella_asinigenitalis_MCE3 0
Asticcacaulis_excentricus_CB_48 0
Brevundimonas_subvibrioides_ATCC_15264 0
Rhodospirillum_centenum_SW 1
Azospirillum_lipoferum_4B 1
Teredinibacter_turnerae_T7901 1
Shewanella_halifaxensis_HAW-EB4 0
Shewanella_sediminis_HAW-EB3 0
Shewanella_pealeana_ATCC_700345 0
Shewanella_oneidensis_MR-1 0
Shewanella_baltica_OS185 0
Shewanella_sp._MR-4 0
Shewanella_putrefaciens_CN-32 0
Pseudoalteromonas_sp._SM9913 0
Marinomonas_posidonica_IVIA-Po-181 0
Marinomonas_sp._MWYL1 1
Marinomonas_mediterranea_MMB-1 1
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1
Halorhodospira_halophila_SL1 1
Allochromatium_vinosum_DSM_180 1
Candidatus_Ruthia_magnifica_str._Cm_(Calyptogena_magnifica) 0
Pantoea_ananatis_LMG_20103 0
Erwinia_billingiae_Eb661 0
Thiomicrospira_crunogena_XCL-2 0
Cenarchaeum_symbiosum_A 0
Candidatus_Nitrosopumilus_sp._AR2 0
Nitrosopumilus_maritimus_SCM1 0
Candidatus_Korarchaeum_cryptofilum_OPF8 1
Acidilobus_saccharovorans_345-15 1
Fervidicoccus_fontis_Kam940 1
Pyrolobus_fumarii_1A 0
Hyperthermus_butylicus_DSM_5456 1
Ignisphaera_aggregans_DSM_17230 0
Ignicoccus_hospitalis_KIN4/I 0
Desulfurococcus_kamchatkensis_1221n 1
Sulfolobus_tokodaii_str._7 1
Sulfolobus_solfataricus_P2 3
Thermofilum_sp._1910b 1
Thermofilum_pendens_Hrk_5 1
Vulcanisaeta_moutnovskia_768-28 1
Vulcanisaeta_distributa_DSM_14429 1
Caldivirga_maquilingensis_IC-167 1
Pyrobaculum_sp._1860 2
Pyrobaculum_calidifontis_JCM_11548 1
Pyrobaculum_arsenaticum_DSM_13514 1
Pyrobaculum_oguniense_TE7 1
Thermoproteus_neutrophilus_V24Sta 1
Methanosaeta_harundinacea_6Ac 1
Methanosaeta_thermophila_PT 1
Archaeoglobus_fulgidus_DSM_4304 1
Pyrococcus_yayanosii_CH1 1
Pyrococcus_furiosus_COM1 1
Methanocaldococcus_vulcanius_M7 0
Methanococcus_voltae_A3 2
Methanococcus_vannielii_SB 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Hordeum_vulgare_22   (Domesticated barley)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Crinalium_epipsammum_PCC_9333 0
Calothrix_parietina_Calothrix_sp._PCC_6303 0
Cylindrospermum_stagnale_PCC_7417 0
Anabaena_cylindrica_PCC_7122 0
Mycoplasma_putrefaciens_Mput9231 0
Thermus_thermophilus_JL-18 0
Thermus_thermophilus_SG0.5JP17-16 0
Thermus_thermophilus_HB8 1
Clostridium_saccharobutylicum_DSM_13864 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 0
Clostridium_perfringens_SM101 0
Clostridium_perfringens_str._13 0
Clostridium_pasteurianum_BC1 0
Clostridium_botulinum_H04402_065 1
Clostridium_botulinum_F_str._230613 1
Clostridium_botulinum_F_str._Langeland 1
Clostridium_botulinum_E3_str._Alaska_E43 0
Clostridium_botulinum_Ba4_str._657 1
Clostridium_botulinum_A_str._Hall 1
Clostridium_botulinum_A_str._ATCC_19397 1
Clostridium_acetobutylicum_DSM_1731 0
Clostridium_acetobutylicum_EA_2018 0
Thermoanaerobacterium_thermosaccharolyticum_M0795 1
Lactobacillus_brevis_KB290 0
Streptococcus_pneumoniae_SPNA45 0
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 1
Paenibacillus_mucilaginosus_KNP414 0
Paenibacillus_larvae_subsp._larvae_DSM_25430 1
Paenibacillus_polymyxa_E681 0
Geobacillus_sp._Y412MC52 1
Geobacillus_sp._Y412MC61 1
Bacillus_infantis_NRRL_B-14911 0
Porphyromonas_gingivalis_TDC60 1
Porphyromonas_gingivalis_W83 1
Brachyspira_pilosicoli_WesB 0
Brachyspira_pilosicoli_B2904 0
Brachyspira_pilosicoli_P43/6/78 0
Borrelia_valaisiana_VS116 0
Borrelia_burgdorferi_JD1 0
Borrelia_burgdorferi_N40 0
Borrelia_burgdorferi_ZS7 0
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Geobacter_sp._M18 0
Myxococcus_stipitatus_DSM_14675 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 0
Shewanella_sp._W3-18-1 0
Shewanella_sp._ANA-3 0
Shewanella_baltica_BA175 0
Shewanella_baltica_OS678 0
Shewanella_baltica_OS117 0
Shewanella_baltica_OS223 0
Shewanella_baltica_OS195 0
Shewanella_baltica_OS155 0
Shewanella_sp._MR-7 0
Shewanella_putrefaciens_200 1
Thioalkalivibrio_nitratireducens_DSM_14787 1
Thioflavicoccus_mobilis_8321 1
Pantoea_ananatis_LMG_5342 0
Pantoea_ananatis_PA13 0
Pantoea_ananatis_AJ13355 0
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 0
Sulfolobus_islandicus_LAL14/1 2
Sulfolobus_islandicus_REY15A 2
Sulfolobus_islandicus_HVE10/4 1
Sulfolobus_islandicus_Y.G.57.14 3
Sulfolobus_islandicus_L.S.2.15 2
Sulfolobus_islandicus_M.16.27 1
Sulfolobus_islandicus_M.14.25 1
Sulfolobus_islandicus_M.16.4 1
Sulfolobus_islandicus_L.D.8.5 1
Sulfolobus_solfataricus_98/2 1
Methanomethylovorans_hollandica_DSM_15978 0
Pyrococcus_furiosus_DSM_3638 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 0
Halorhabdus_tiamatea_SARL4B 0

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Longest transcript per gene
Genome     Number
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
NCBI_plasmid_sequences_(Plasmids) 6
NCBI_viral_sequences_(Viral) 0
TargetDB__(Targets) 5
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 17
STRING_v9.0.5_(STRING) 65
Uniprot_2018_03_genome 611
NCBI_2017_08_genome 826
PDB_chains_(SCOP_1.75)_(PDB) 1
UniProt__viral_sequences_(Viral) 0
Protein_Data_Bank_(all_PDB_sequenc) 9

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