SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 158615 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

158615 - RbcX-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Papio_anubis_76   (Olive baboon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Rattus_norvegicus_76_5.0   (Norway rat)   0
Mus_musculus_76_38   (House mouse)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Sus_scrofa_76_10.2   (Pig)   0
Ovis_aries_76_3.1   (Sheep)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   0
Felis_catus_76_6.2   (Domestic cat)   0
Equus_caballus_76_2   (Horse)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Saccoglossus_kowalevskii_v3.0 0
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Poecilia_formosa_76   (Amazon molly)   0
Danio_rerio_76_9   (Zebrafish)   0
Oikopleura_dioica 0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 0
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Acyrthosiphon_pisum_   (Pea aphid)   0
Rhodnius_prolixus_22 0
Daphnia_pulex_   (Common water flea)   0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 0
Acropora_digitifera_v1.0 0
Hydra_vulgaris 0
Phycomyces_blakesleeanus_ 0
Galerina_marginata_v1.0 0
Hebeloma_cylindrosporum_h7_v2.0 0
Agaricus_bisporus_var._bisporus_ 0
Schizophyllum_commune_ 0
Daldinia_eschscholzii_EC12_v1.0 0
Magnaporthe_grisea_70-15_ 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Ajellomyces_dermatitidis_SLH14081_ 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Uncinocarpus_reesii_1704_ 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 0
Penicillium_chrysogenum_v1.0 0
Aspergillus_terreus_NIH2624_ 0
Candida_tropicalis_MYA-3404_ 0
Pichia_pastoris_GS115_ 0
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 0
Saccharomyces_paradoxus_MIT 0
Schizosaccharomyces_pombe   (Fission yeast)   0
Entamoeba_dispar_1.2 0
Entamoeba_invadens_1.2 0
Entamoeba_histolytica_1 0
Selaginella_moellendorffii_ 3
Picea_abies   (Norway spruce)   0
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 1
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Carica_papaya_   (Papaya)   0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   0
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   0
Prunus_persica_v139   (Peach)   0
Linum_usitatissimum_v200   (Flax)   1
Manihot_esculenta_v147   (Cassava)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   0
Actinidia_chinensis_Hongyang_ 0
Aquilegia_coerulea_v195 0
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   3
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   2
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   1
Oryza_punctata_22 0
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Panicum_virgatum_v202   (Switchgrass)   2
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   2
Zea_mays_v181   (Maize)   2
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   0
Musa_acuminata_22   (Wild Malaysian banana)   1
Amborella_trichopoda_22 0
Physcomitrella_patens 3
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 2
Chlorella_vulgaris_ 1
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 2
Ostreococcus_sp._RCC809_ 6
Ostreococcus_lucimarinus_CCE9901_ 6
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 0
Micromonas_sp._RCC299_ 0
Micromonas_pusilla_CCMP1545_v3.0 2
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Bigelowiella_natans_CCMP2755_22 0
Cyanophora_paradoxa_ 1
Trypanosoma_vivax_ 0
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Ectocarpus_siliculosus 0
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 0
Phytophthora_sojae_1.1 0
Phytophthora_infestans_T30-4_ 0
Phytophthora_capsici_ 0
Fragilariopsis_cylindrus 0
Thalassiosira_pseudonana_CCMP1335 0
Perkinsus_marinus_ATCC_50983_ 0
Paramecium_tetraurelia_ 0
Tetrahymena_thermophila_SB210_1_ 0
Neospora_caninum 0
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Babesia_bovis_T2Bo_ 0
Plasmodium_falciparum_3D7_ 0
Symbiodinium_minutum_clade_B1_v1.2 0
Guillardia_theta_CCMP2712_v1.0_ 0
Emiliania_huxleyi_CCMP1516_ 0
Leptolyngbya_sp._PCC_7376 1
Pseudanabaena_sp._PCC_7367 0
Acaryochloris_marina_MBIC11017 1
Synechocystis_sp._PCC_6803 1
Thermosynechococcus_sp._NK55 1
Thermosynechococcus_elongatus_BP-1 1
Synechococcus_sp._PCC_7502 1
Synechococcus_sp._PCC_6312 1
Synechococcus_elongatus_PCC_7942 1
Microcoleus_sp._PCC_7113 1
Trichodesmium_erythraeum_IMS101 1
Geitlerinema_sp._PCC_7407 1
Cyanothece_sp._PCC_8802 1
Gloeocapsa_sp._PCC_7428 1
Halothece_sp._PCC_7418 1
Microcystis_aeruginosa_NIES-843 1
Gloeobacter_violaceus_PCC_7421 1
Rivularia_sp._PCC_7116 1
Calothrix_sp._PCC_7507 1
Anabaena_variabilis_ATCC_29413 1
'Nostoc_azollae'_0708 1
Nostoc_sp._PCC_7107 1
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 1
Anabaena_sp._90 1
Frankia_sp._EAN1pec 0
Frankia_alni_ACN14a 0
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 0
Saccharopolyspora_erythraea_NRRL_2338 0
Micromonospora_aurantiaca_ATCC_27029 0
Corynebacterium_aurimucosum_ATCC_700975 0
Corynebacterium_diphtheriae_NCTC_13129 0
Rothia_dentocariosa_ATCC_17931 0
Actinomyces_sp._F0330 0
Alkaliphilus_metalliredigens_QYMF 0
Caldicellulosiruptor_saccharolyticus_DSM_8903 0
Halanaerobium_hydrogeniformans 0
Oenococcus_oeni_PSU-1 0
Leuconostoc_sp._C2 0
Leuconostoc_kimchii_IMSNU_11154 0
Streptococcus_sanguinis_SK36 0
Anoxybacillus_flavithermus_WK1 0
Geobacillus_thermoleovorans_CCB_US3_UF5 0
Geobacillus_kaustophilus_HTA426 0
Geobacillus_sp._GHH01 0
Geobacillus_sp._WCH70 0
Geobacillus_thermodenitrificans_NG80-2 0
Bacillus_sp._1NLA3E 0
Chlorobium_luteolum_DSM_273 0
Chloroherpeton_thalassium_ATCC_35110 0
Robiginitalea_biformata_HTCC2501 0
Flavobacterium_columnare_ATCC_49512 0
Candidatus_Protochlamydia_amoebophila_UWE25 0
Chlamydia_muridarum_Nigg 0
Methylacidiphilum_infernorum_V4 0
Flexistipes_sinusarabici_DSM_4947 0
Kosmotoga_olearia_TBF_19.5.1 0
Campylobacter_lari_RM2100 0
Desulfovibrio_salexigens_DSM_2638 0
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 0
Geobacter_daltonii_FRC-32 0
Cupriavidus_taiwanensis_LMG_19424 0
Ralstonia_eutropha_H16 0
Burkholderia_vietnamiensis_G4 0
Comamonas_testosteroni_CNB-2 0
Caulobacter_sp._K31 0
Sphingomonas_wittichii_RW1 0
Magnetospirillum_magneticum_AMB-1 0
Candidatus_Rickettsia_amblyommii_str._GAT-30V 0
Methylobacterium_extorquens_AM1 0
Agrobacterium_vitis_S4 0
Pelagibacterium_halotolerans_B2 0
Nitrobacter_winogradskyi_Nb-255 0
Vibrio_furnissii_NCTC_11218 0
Shewanella_piezotolerans_WP3 0
Marinomonas_mediterranea_MMB-1 0
Proteus_mirabilis_HI4320 0
Escherichia_blattae_DSM_4481 0
Enterobacter_sp._R4-368 0
Pseudomonas_entomophila_L48 0
Pseudomonas_stutzeri_A1501 0
Acinetobacter_baumannii_ATCC_17978 0
Thioalkalimicrobium_cyclicum_ALM1 0
Haloterrigena_turkmenica_DSM_5511 0
Haloarcula_hispanica_ATCC_33960 0
Haloarcula_marismortui_ATCC_43049 0
Methanothermobacter_thermautotrophicus_str._Delta_H 0

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Strains
Genome     Number
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Cryptococcus_neoformans_var._grubii_H99_ 0
Cryptococcus_neoformans_B-3501A_ 0
Cryptococcus_neoformans_JEC21_ 0
Coccidioides_immitis_H538.4_ 0
Ajellomyces_dermatitidis_ER-3_ 0
Histoplasma_capsulatum_H143 0
Histoplasma_capsulatum_G186AR 0
Saccharomyces_cerevisiae_CLIB324 0
Saccharomyces_cerevisiae_FostersB 0
Schizosaccharomyces_pombe_972h-_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Hordeum_vulgare_22   (Domesticated barley)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Trypanosoma_brucei_Lister_427_v4.1 0
Neospora_caninum_Nc-Liverpool_6.2 0
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0
Chroococcidiopsis_thermalis_PCC_7203 1
Chamaesiphon_minutus_PCC_6605 1
Synechocystis_sp._PCC_6803_substr._PCC-P 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1
Synechocystis_sp._PCC_6803_substr._GT-I 1
Synechocystis_sp._PCC_6803 1
Dactylococcopsis_salina_PCC_8305 1
Synechococcus_sp._JA-2-3B'a(2-13) 1
Synechococcus_sp._JA-3-3Ab 1
Synechococcus_sp._PCC_7002 1
Synechococcus_elongatus_PCC_6301 1
Crinalium_epipsammum_PCC_9333 1
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 0
Arthrospira_platensis_NIES-39 1
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7425 1
Cyanothece_sp._PCC_7424 1
Cyanothece_sp._ATCC_51142 1
Cyanothece_sp._PCC_8801 1
Cyanobacterium_aponinum_PCC_10605 1
Cyanobacterium_stanieri_PCC_7202 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Stanieria_cyanosphaera_PCC_7437 0
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Cylindrospermum_stagnale_PCC_7417 1
Anabaena_cylindrica_PCC_7122 1
Streptomyces_venezuelae_ATCC_10712 0
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 0
Corynebacterium_diphtheriae_CDCE_8392 0
Corynebacterium_diphtheriae_PW8 0
Corynebacterium_diphtheriae_C7_(beta) 0
Actinomyces_viscosus_C505 0
Clostridium_botulinum_BKT015925 0
Carnobacterium_maltaromaticum_LMA28 0
Enterococcus_casseliflavus_EC20 0
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 0
Paenibacillus_polymyxa_CR1 0
Listeria_monocytogenes_N53-1 0
Geobacillus_sp._C56-T3 0
Geobacillus_sp._Y4.1MC1 0
Geobacillus_sp._Y412MC52 0
Geobacillus_sp._Y412MC61 0
Staphylococcus_pasteuri_SP1 0
Staphylococcus_warneri_SG1 0
Staphylococcus_aureus_subsp._aureus_SA957 0
Staphylococcus_aureus_subsp._aureus_SA40 0
Staphylococcus_aureus_subsp._aureus_M013 0
Nonlabens_dokdonensis_DSW-6 0
Psychroflexus_torquis_ATCC_700755 0
Chlamydia_trachomatis_K/SotonK1 0
Chlamydia_trachomatis_G/SotonG1 0
Chlamydia_trachomatis_D/SotonD6 0
Chlamydia_trachomatis_D/SotonD5 0
Chlamydia_trachomatis_RC-J(s)/122 0
Chlamydia_trachomatis_RC-L2(s)/3 0
Chlamydia_trachomatis_D-LC 0
Chlamydia_trachomatis_D-EC 0
Chlamydia_trachomatis_G/11222 0
Chlamydia_trachomatis_D/UW-3/CX 0
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 0
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 0
Taylorella_equigenitalis_14/56 0
Taylorella_equigenitalis_ATCC_35865 0
Octadecabacter_antarcticus_307 0
Octadecabacter_arcticus_238 0
Vibrio_vulnificus_CMCP6 0
Dickeya_dadantii_Ech586 0
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 0
Pseudomonas_stutzeri_DSM_4166 0
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 0
Acinetobacter_johnsonii__SH046 0
Natronococcus_occultus_SP4 0
Natronobacterium_gregoryi_SP2 0
Haloarcula_hispanica_N601 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Rattus_norvegicus_69_3.4   (Norway rat)   0
Mus_musculus_69_38   (House mouse)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Sus_scrofa_69_10.2   (Pig)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   0
Equus_caballus_69_2   (Horse)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Oryzias_latipes_69_1   (Japanese medaka)   0
Danio_rerio_69_9   (Zebrafish)   0
Arabidopsis_thaliana_10   (Thale cress)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Loa_loa_v3.3_(Request)   (Eye worm)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Picea_sitchensis__(Incomplete)   (Sitka spruce)   0
Lotus_japonicus__(Early_assembly) 0
Malus_x_domestica_(Duplicate)   (Apple)   0
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
NCBI_plasmid_sequences_(Plasmids) 0
STRING_v9.0.5_(STRING) 33
Protein_Data_Bank_(all_PDB_sequenc) 81
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 156
Protozoadb_2010_08_(Protozoadb) 0
PDB_chains_(SCOP_1.75)_(PDB) 6
NCBI_2017_08_genome 268
UniProt__viral_sequences_(Viral) 0
Uniprot_2018_03_genome 1669
TargetDB__(Targets) 4
NCBI_viral_sequences_(Viral) 0

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