SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 159774 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

159774 - YerB-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Ciona_intestinalis_76   (Vase tunicate)   0
Heliconius_melpomene_   (Postman butterfly)   0
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Atta_cephalotes_v1.1 0
Drosophila_pseudoobscura_2.13 0
Drosophila_suzukii 0
Drosophila_virilis_1.2 0
Megaselia_scalaris_22 0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Pristionchus_pacificus_ 0
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Meloidogyne_hapla_ 0
Caenorhabditis_brenneri_ 0
Trichinella_spiralis_22 0
Schistosoma_mansoni_ 0
Amphimedon_queenslandica 0
Proterospongia_sp._ATCC_50818_ 0
Conidiobolus_coronatus_NRRL28638_v1.0 0
Rhizopus_oryzae_RA_99-880_ 0
Sphaerobolus_stellatus_v1.0 0
Serpula_lacrymans_var._lacrymans_S7.9_ 0
Scleroderma_citrinum_Foug_A_v1.0 0
Phanerochaete_chrysosporium_RP-78_2.1 0
Daldinia_eschscholzii_EC12_v1.0 0
Chaetomium_globosum_CBS_148.51_ 0
Fusarium_graminearum_ 0
Trichoderma_harzianum_CBS_226.95_v1.0 0
Setosphaeria_turcica_v1.0 0
Dothistroma_septosporum 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Trichophyton_rubrum_CBS_118892_ 0
Aspergillus_acidus_v1.0 0
Aspergillus_fumigatus_Af293 0
Aspergillus_wentii_v1.0 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Schizosaccharomyces_japonicus_yFS275_ 0
Entamoeba_invadens_1.2 0
Pinus_taeda   (Loblolly pine)   0
Picea_abies   (Norway spruce)   0
Gossypium_raimondii_v221 0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Carica_papaya_   (Papaya)   0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   0
Cucumis_sativus_v122   (Cucumber)   0
Prunus_persica_v139   (Peach)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Solanum_lycopersicum_v.2.3   (Tomato)   0
Actinidia_chinensis_Hongyang_ 0
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   0
Oryza_glaberrima   (African rice)   0
Musa_balbisiana   (Balbis banana)   0
Physcomitrella_patens 0
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Ostreococcus_tauri_ 0
Cyanophora_paradoxa_ 0
Trypanosoma_congolense_2.4 0
Perkinsus_marinus_ATCC_50983_ 0
Tetrahymena_thermophila_SB210_1_ 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_yoelii_ssp._yoelii_1_ 0
Emiliania_huxleyi_CCMP1516_ 0
Thermobaculum_terrenum_ATCC_BAA-798 0
Halothece_sp._PCC_7418 0
Calothrix_sp._PCC_7507 0
Nostoc_sp._PCC_7524 0
Ilumatobacter_coccineus 0
Acidimicrobium_ferrooxidans_DSM_10331 1
Thermobispora_bispora_DSM_43833 1
Nakamurella_multipartita_DSM_44233 1
Acidothermus_cellulolyticus_11B 2
Modestobacter_marinus 1
Geodermatophilus_obscurus_DSM_43160 0
Catenulispora_acidiphila_DSM_44928 1
Thermomonospora_curvata_DSM_43183 0
Streptosporangium_roseum_DSM_43021 1
Streptomyces_coelicolor_A3(2) 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1
Streptomyces_avermitilis_MA-4680 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_scabiei_87.22 1
Saccharomonospora_viridis_DSM_43017 1
Saccharopolyspora_erythraea_NRRL_2338 2
Nocardioides_sp._JS614 1
Microlunatus_phosphovorus_NM-1 0
Verrucosispora_maris_AB-18-032 0
Micromonospora_sp._L5 1
Micromonospora_aurantiaca_ATCC_27029 1
Amycolicicoccus_subflavus_DQS3-9A1 1
Mycobacterium_rhodesiae_NBB3 0
Mycobacterium_chubuense_NBB4 0
Corynebacterium_aurimucosum_ATCC_700975 0
Sanguibacter_keddieii_DSM_10542 1
Beutenbergia_cavernae_DSM_12333 1
Jonesia_denitrificans_DSM_20603 0
Xylanimonas_cellulosilytica_DSM_15894 1
Cellulomonas_flavigena_DSM_20109 1
Cellulomonas_fimi_ATCC_484 2
[Cellvibrio]_gilvus_ATCC_13127 1
Mobiluncus_curtisii_ATCC_43063 0
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 0
Anaerolinea_thermophila_UNI-1 0
Sphaerobacter_thermophilus_DSM_20745 1
Herpetosiphon_aurantiacus_DSM_785 0
Roseiflexus_sp._RS-1 1
Roseiflexus_castenholzii_DSM_13941 1
Chloroflexus_sp._MS-G 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aggregans_DSM_9485 0
Chloroflexus_aurantiacus_J-10-fl 0
Truepera_radiovictrix_DSM_17093 0
Oceanithermus_profundus_DSM_14977 0
Marinithermus_hydrothermalis_DSM_14884 0
Meiothermus_silvanus_DSM_9946 0
Natranaerobius_thermophilus_JW/NM-WN-LF 0
Symbiobacterium_thermophilum_IAM_14863 1
Clostridium_clariflavum_DSM_19732 1
Clostridium_thermocellum_ATCC_27405 1
Faecalibacterium_prausnitzii 1
Ruminococcus_sp. 1
Thermaerobacter_marianensis_DSM_12885 0
Sulfobacillus_acidophilus_DSM_10332 1
Oscillibacter_valericigenes_Sjm18-20 0
butyrate-producing_bacterium_SS3/4 0
Thermincola_potens_JR 1
Desulfotomaculum_reducens_MI-1 0
Clostridium_saccharolyticum_WM1 0
Clostridium_phytofermentans_ISDg 0
Eubacterium_rectale_M104/1 0
Eubacterium_rectale_ATCC_33656 0
Coprococcus_sp._ART55/1 1
Roseburia_hominis_A2-183 1
Roseburia_intestinalis 1
Butyrivibrio_proteoclasticus_B316 1
Butyrivibrio_fibrisolvens 1
Alkaliphilus_oremlandii_OhILAs 1
Alkaliphilus_metalliredigens_QYMF 1
Clostridium_perfringens_ATCC_13124 1
Thermosediminibacter_oceani_DSM_16646 1
Caldicellulosiruptor_obsidiansis_OB47 1
Caldicellulosiruptor_kronotskyensis_2002 1
Caldicellulosiruptor_hydrothermalis_108 1
Caldicellulosiruptor_owensensis_OL 1
Caldicellulosiruptor_lactoaceticus_6A 1
Caldicellulosiruptor_kristjanssonii_177R1B 1
Caldicellulosiruptor_saccharolyticus_DSM_8903 1
Caldicellulosiruptor_bescii_DSM_6725 1
Tepidanaerobacter_acetatoxydans_Re1 1
Halothermothrix_orenii_H_168 1
Halanaerobium_hydrogeniformans 0
Halanaerobium_praevalens_DSM_2228 0
Lactococcus_garvieae_ATCC_49156 1
Exiguobacterium_sp._AT1b 0
Kyrpidia_tusciae_DSM_2912 1
Brevibacillus_brevis_NBRC_100599 1
Paenibacillus_sp._JDR-2 1
Paenibacillus_terrae_HPL-003 1
Paenibacillus_mucilaginosus_3016 0
Paenibacillus_polymyxa_M1 1
Bacillus_selenitireducens_MLS10 1
Solibacillus_silvestris_StLB046 1
Geobacillus_thermoglucosidasius_C56-YS93 1
Lysinibacillus_sphaericus_C3-41 1
Oceanobacillus_iheyensis_HTE831 1
Anoxybacillus_flavithermus_WK1 1
Geobacillus_thermoleovorans_CCB_US3_UF5 1
Geobacillus_kaustophilus_HTA426 1
Geobacillus_sp._GHH01 1
Geobacillus_sp._WCH70 1
Geobacillus_thermodenitrificans_NG80-2 1
Halobacillus_halophilus_DSM_2266 1
Bacillus_sp._JS 1
Bacillus_sp._1NLA3E 1
Bacillus_amyloliquefaciens_FZB42 1
Bacillus_atrophaeus_1942 1
Bacillus_subtilis_subsp._subtilis_str._168 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_halodurans_C-125 1
Bacillus_pseudofirmus_OF4 1
Bacillus_cellulosilyticus_DSM_2522 1
Bacillus_coagulans_2-6 1
Prosthecochloris_aestuarii_DSM_271 0
Haliscomenobacter_hydrossis_DSM_1100 0
Niastella_koreensis_GR20-10 0
Chitinophaga_pinensis_DSM_2588 0
Fibrella_aestuarina 0
Runella_slithyformis_DSM_19594 0
Solitalea_canadensis_DSM_3403 0
Sphingobacterium_sp._21 0
Cellulophaga_algicola_DSM_14237 0
Coraliomargarita_akajimensis_DSM_45221 0
Treponema_primitia_ZAS-2 0
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 0
Candidatus_Saccharibacteria_bacterium_RAAC3_TM7_1 1
Candidatus_Saccharimonas_aalborgensis 0
Helicobacter_bizzozeronii_CIII-1 0
Myxococcus_fulvus_HW-1 0
Dechloromonas_aromatica_RCB 0
Burkholderia_ambifaria_AMMD 0
Burkholderia_cenocepacia_HI2424 0
Bordetella_petrii_DSM_12804 0
Bordetella_bronchiseptica_RB50 0
Nitrosomonas_eutropha_C91 0
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 0
Pseudomonas_entomophila_L48 0
Pseudomonas_fulva_12-X 0
Pseudomonas_mendocina_ymp 0
Acinetobacter_oleivorans_DR1 0
Acinetobacter_calcoaceticus_PHEA-2 0
Acinetobacter_baumannii_ATCC_17978 0
Methanosarcina_acetivorans_C2A 0
Methanoplanus_petrolearius_DSM_11571 0
Halorubrum_lacusprofundi_ATCC_49239 0
Methanosphaera_stadtmanae_DSM_3091 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Histoplasma_capsulatum_G186AR 0
Aspergillus_fumigatus_A1163_ 0
Arthrospira_platensis_NIES-39 0
Stanieria_cyanosphaera_PCC_7437 0
Streptomyces_davawensis_JCM_4913 1
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_venezuelae_ATCC_10712 1
Streptomyces_collinus_Tu_365 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Amycolatopsis_orientalis_HCCB10007 1
Clostridium_thermocellum_DSM_1313 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 0
Faecalibacterium_prausnitzii_L2-6 1
Ruminococcus_champanellensis_18P13 1
Sulfobacillus_acidophilus_TPY 1
Clostridium_acidurici_9a 1
Coprococcus_catus_GD/7 1
Roseburia_intestinalis_XB6B4 1
Clostridium_sp._SY8519 1
Clostridium_perfringens_SM101 1
Clostridium_perfringens_str._13 1
Clostridium_botulinum_E3_str._Alaska_E43 0
Enterococcus_casseliflavus_EC20 0
Lactobacillus_helveticus_R0052 0
Lactococcus_garvieae_Lg2 1
Streptococcus_iniae_SF1 0
Thermobacillus_composti_KWC4 1
Paenibacillus_sp._Y412MC10 1
Paenibacillus_mucilaginosus_KNP414 0
Paenibacillus_mucilaginosus_K02 0
Paenibacillus_larvae_subsp._larvae_DSM_25430 1
Paenibacillus_polymyxa_CR1 1
Paenibacillus_polymyxa_SC2 1
Paenibacillus_polymyxa_E681 1
Geobacillus_sp._C56-T3 1
Geobacillus_sp._Y4.1MC1 1
Geobacillus_sp._Y412MC52 1
Geobacillus_sp._Y412MC61 1
Amphibacillus_xylanus_NBRC_15112 1
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 1
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 1
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 1
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 1
Bacillus_amyloliquefaciens_LFB112 1
Bacillus_amyloliquefaciens_CC178 1
Bacillus_amyloliquefaciens_Y2 1
Bacillus_amyloliquefaciens_IT-45 1
Bacillus_amyloliquefaciens_XH7 1
Bacillus_amyloliquefaciens_LL3 1
Bacillus_amyloliquefaciens_TA208 1
Bacillus_amyloliquefaciens_DSM_7 1
Bacillus_licheniformis_9945A 1
Bacillus_subtilis_PY79 1
Bacillus_subtilis_XF-1 1
Bacillus_subtilis_QB928 1
Bacillus_subtilis_BSn5 1
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1
Bacillus_subtilis_subsp._natto_BEST195 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_infantis_NRRL_B-14911 1
Bacillus_coagulans_36D1 1
Emticicia_oligotrophica_DSM_17448 0
Prevotella_sp._oral_taxon_299_str._F0039 0
Nonlabens_dokdonensis_DSW-6 0
Ralstonia_pickettii_12J 0
Burkholderia_sp._KJ006 0
Burkholderia_cenocepacia_MC0-3 0
Burkholderia_cenocepacia_AU_1054 0
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 0
Bordetella_bronchiseptica_MO149 0
Bordetella_bronchiseptica_253 0
Sulfuricella_denitrificans_skB26 0
Vibrio_nigripulchritudo_VibrioScope 0
Glaciecola_psychrophila_170 0
Rahnella_aquatilis_HX2 0
Dickeya_dadantii_3937 0
Pseudomonas_mendocina_NK-01 0
Acinetobacter_genomosp._13TU__RUH2624 0
Acinetobacter_sp.__SH024 0
Acinetobacter_calcoaceticus_ruh2202 0
Acinetobacter_baumannii_ZW85-1 0
Acinetobacter_baumannii_TYTH-1 0
Acinetobacter_baumannii_BJAB0868 0
Acinetobacter_baumannii_BJAB0715 0
Acinetobacter_baumannii_BJAB07104 0
Acinetobacter_baumannii_TCDC-AB0715 0
Acinetobacter_baumannii_D1279779 0
Acinetobacter_baumannii_MDR-TJ 0
Acinetobacter_baumannii_1656-2 0
Acinetobacter_baumannii__ATCC_19606 0
Acinetobacter_baumannii_AB307-0294 0
Acinetobacter_baumannii_AYE 0
Acinetobacter_baumannii_SDF 0
Acinetobacter_baumannii_MDR-ZJ06 0
Acinetobacter_baumannii_AB0057 0
Acinetobacter_baumannii_ACICU 0
Acinetobacter_junii__SH205 0
Natronomonas_moolapensis_8.8.11 0

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Longest transcript per gene
Genome     Number
Oryzias_latipes_69_1   (Japanese medaka)   0
Ciona_intestinalis_69   (Vase tunicate)   0
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
NCBI_plasmid_sequences_(Plasmids) 0
STRING_v9.0.5_(STRING) 42
PDB_chains_(SCOP_1.75)_(PDB) 1
Uniprot_2018_03_genome 2335
NCBI_2017_08_genome 2997
Protein_Data_Bank_(all_PDB_sequenc) 1
UniProt__viral_sequences_(Viral) 0
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 4
TargetDB__(Targets) 4
NCBI_viral_sequences_(Viral) 0
Protozoadb_2010_08_(Protozoadb) 0

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