SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 46955,55136 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

46955 - Putative DNA-binding domain
55136 - Probable bacterial effector-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Gloeocapsa_sp._PCC_7428 1
Rivularia_sp._PCC_7116 1
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 1
Conexibacter_woesei_DSM_14684 1
Eggerthella_sp._YY7918 1
Eggerthella_lenta_DSM_2243 2
Olsenella_uli_DSM_7084 1
Coriobacterium_glomerans_PW2 1
Ilumatobacter_coccineus 1
Modestobacter_marinus 1
Geodermatophilus_obscurus_DSM_43160 1
Kineococcus_radiotolerans_SRS30216 2
Catenulispora_acidiphila_DSM_44928 3
Stackebrandtia_nassauensis_DSM_44728 2
Frankia_sp._EAN1pec 1
Frankia_alni_ACN14a 1
Thermomonospora_curvata_DSM_43183 1
Streptosporangium_roseum_DSM_43021 2
Kitasatospora_setae_KM-6054 1
Streptomyces_coelicolor_A3(2) 2
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_sp._SirexAA-E 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1
Streptomyces_bingchenggensis_BCW-1 2
Streptomyces_violaceusniger_Tu_4113 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Actinosynnema_mirum_DSM_43827 2
Saccharopolyspora_erythraea_NRRL_2338 1
Amycolatopsis_mediterranei_U32 1
Kribbella_flavida_DSM_17836 2
Propionibacterium_propionicum_F0230a 1
Salinispora_arenicola_CNS-205 1
Salinispora_tropica_CNB-440 2
Verrucosispora_maris_AB-18-032 1
Actinoplanes_sp._SE50/110 3
Actinoplanes_missouriensis_431 3
Tsukamurella_paurometabola_DSM_20162 3
Gordonia_sp._KTR9 1
Gordonia_bronchialis_DSM_43247 1
Rhodococcus_erythropolis_PR4 1
Nocardia_cyriacigeorgica_GUH-2 1
Nocardia_farcinica_IFM_10152 2
Mycobacterium_sp._JLS 1
Mycobacterium_vanbaalenii_PYR-1 1
Mycobacterium_rhodesiae_NBB3 1
Mycobacterium_gilvum_PYR-GCK 1
Mycobacterium_smegmatis_str._MC2_155 1
Kytococcus_sedentarius_DSM_20547 1
Microbacterium_testaceum_StLB037 1
Xylanimonas_cellulosilytica_DSM_15894 1
Arthrobacter_arilaitensis_Re117 1
Bifidobacterium_adolescentis_ATCC_15703 1
Herpetosiphon_aurantiacus_DSM_785 4
Truepera_radiovictrix_DSM_17093 1
Deinococcus_maricopensis_DSM_21211 1
Deinococcus_geothermalis_DSM_11300 2
Anaerococcus_prevotii_DSM_20548 1
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1
Erysipelothrix_rhusiopathiae_str._Fujisawa 1
Clostridium_cellulolyticum_H10 1
Ethanoligenens_harbinense_YUAN-3 1
Oscillibacter_valericigenes_Sjm18-20 3
Desulfosporosinus_acidiphilus_SJ4 0
Desulfosporosinus_orientis_DSM_765 4
Dehalobacter_sp._DCA 1
Dehalobacter_sp._CF 1
Syntrophobotulus_glycolicus_DSM_8271 1
Desulfitobacterium_hafniense_Y51 3
Desulfitobacterium_dehalogenans_ATCC_51507 2
Desulfotomaculum_ruminis_DSM_2154 2
Acetobacterium_woodii_DSM_1030 4
Eubacterium_limosum_KIST612 6
Clostridium_difficile_630 8
Clostridium_sticklandii_DSM_519 1
Clostridium_saccharolyticum_WM1 6
Clostridium_phytofermentans_ISDg 5
Clostridium_lentocellum_DSM_5427 3
Coprococcus_sp._ART55/1 2
Butyrivibrio_proteoclasticus_B316 1
Butyrivibrio_fibrisolvens 1
Alkaliphilus_oremlandii_OhILAs 2
Alkaliphilus_metalliredigens_QYMF 2
Clostridium_sp._BNL1100 1
Clostridium_ljungdahlii_DSM_13528 4
Clostridium_kluyveri_DSM_555 2
Clostridium_beijerinckii_NCIMB_8052 2
Clostridium_tetani_E88 3
Clostridium_perfringens_ATCC_13124 1
Clostridium_cellulovorans_743B 4
Clostridium_botulinum_A_str._ATCC_3502 4
Clostridium_acetobutylicum_ATCC_824 1
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 1
Tepidanaerobacter_acetatoxydans_Re1 1
Carnobacterium_sp._17-4 1
Enterococcus_hirae_ATCC_9790 1
Lactobacillus_plantarum_JDM1 1
Streptococcus_intermedius_JTH08 1
Streptococcus_mutans_NN2025 1
Exiguobacterium_sp._AT1b 1
Brevibacillus_brevis_NBRC_100599 2
Paenibacillus_terrae_HPL-003 1
Paenibacillus_mucilaginosus_3016 1
Paenibacillus_polymyxa_M1 1
Solibacillus_silvestris_StLB046 1
Lysinibacillus_sphaericus_C3-41 2
Geobacillus_thermodenitrificans_NG80-2 1
Bacillus_sp._JS 3
Bacillus_amyloliquefaciens_FZB42 1
Bacillus_atrophaeus_1942 2
Bacillus_subtilis_subsp._subtilis_str._168 3
Bacillus_licheniformis_DSM_13_=_ATCC_14580 2
Bacillus_halodurans_C-125 1
Bacillus_weihenstephanensis_KBAB4 3
Bacillus_thuringiensis_str._Al_Hakam 2
Bacillus_cereus_03BB102 2
Bacillus_anthracis_str._A0248 3
Bacillus_pumilus_SAFR-032 2
Bacillus_megaterium_DSM_319 2
Alistipes_finegoldii_DSM_17242 1
Rhodopirellula_baltica_SH_1 1
Fretibacterium_fastidiosum 2
Spirochaeta_smaragdinae_DSM_11293 1
Sphaerochaeta_pleomorpha_str._Grapes 3
Sphaerochaeta_globus_str._Buddy 1
Treponema_brennaborense_DSM_12168 1
Sebaldella_termitidis_ATCC_33386 5
Ilyobacter_polytropus_DSM_2926 2
Desulfotalea_psychrophila_LSv54 2
Desulfovibrio_alaskensis_G20 1
Desulfovibrio_salexigens_DSM_2638 1
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1
Chromobacterium_violaceum_ATCC_12472 1
Hahella_chejuensis_KCTC_2396 1
Pseudomonas_protegens_Pf-5 1
Pseudomonas_aeruginosa_UCBPP-PA14 1
Methanocella_arvoryzae_MRE50 1
Methanosaeta_concilii_GP6 1
Methanosarcina_acetivorans_C2A 1
Methanosarcina_mazei_Go1 1
Methanosarcina_barkeri_str._Fusaro 1
Methanospirillum_hungatei_JF-1 1
Methanocorpusculum_labreanum_Z 1
Methanoculleus_marisnigri_JR1 1
Methanococcus_voltae_A3 1

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Strains
Genome     Number
Chamaesiphon_minutus_PCC_6605 1
Gordonibacter_pamelaeae_7-10-1-b 1
Frankia_sp._EuI1c 1
Nocardiopsis_alba_ATCC_BAA-2165 1
Streptomyces_albus_J1074 1
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_davawensis_JCM_4913 2
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_venezuelae_ATCC_10712 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Saccharothrix_espanaensis_DSM_44229 2
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_orientalis_HCCB10007 2
Actinoplanes_friuliensis_DSM_7358 3
Rhodococcus_erythropolis_CCM2595 1
Nocardia_brasiliensis_ATCC_700358 2
Mycobacterium_smegmatis_str._MC2_155 1
Bifidobacterium_animalis_subsp._animalis_ATCC_25527 1
Bifidobacterium_breve_UCC2003 1
Erysipelothrix_rhusiopathiae_SY1027 1
Clostridium_thermocellum_DSM_1313 1
Faecalibacterium_prausnitzii_L2-6 1
Clostridium_acidurici_9a 2
Desulfosporosinus_meridiei_DSM_13257 1
Desulfitobacterium_hafniense_DCB-2 4
Clostridium_difficile_BI1 7
Clostridium_difficile_R20291 7
Clostridium_difficile_CD196 7
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1
Coprococcus_catus_GD/7 1
Clostridium_sp._SY8519 3
Clostridium_saccharobutylicum_DSM_13864 3
Clostridium_autoethanogenum_DSM_10061 4
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 6
Clostridium_kluyveri_NBRC_12016 2
Clostridium_tetani_genome_12124569 2
Clostridium_perfringens_SM101 1
Clostridium_perfringens_str._13 1
Clostridium_pasteurianum_BC1 1
Clostridium_botulinum_H04402_065 3
Clostridium_botulinum_BKT015925 1
Clostridium_botulinum_F_str._230613 4
Clostridium_botulinum_F_str._Langeland 4
Clostridium_botulinum_E3_str._Alaska_E43 4
Clostridium_botulinum_B1_str._Okra 4
Clostridium_botulinum_Ba4_str._657 5
Clostridium_botulinum_A2_str._Kyoto 5
Clostridium_botulinum_A3_str._Loch_Maree 5
Clostridium_botulinum_A_str._Hall 4
Clostridium_botulinum_A_str._ATCC_19397 4
Clostridium_acetobutylicum_DSM_1731 1
Clostridium_acetobutylicum_EA_2018 1
Carnobacterium_maltaromaticum_LMA28 2
Enterococcus_mundtii_QU_25 1
Enterococcus_casseliflavus_EC20 2
Lactobacillus_plantarum_16 1
Lactobacillus_plantarum_ZJ316 1
Lactobacillus_plantarum_subsp._plantarum_ST-III 1
Lactobacillus_plantarum_subsp._plantarum_P-8 1
Lactobacillus_plantarum_WCFS1 1
Streptococcus_dysgalactiae_subsp._equisimilis_167 1
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 1
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 1
Streptococcus_iniae_SF1 1
Streptococcus_mutans_GS-5 1
Streptococcus_mutans_UA159 1
Streptococcus_salivarius_CCHSS3 1
Paenibacillus_sp._Y412MC10 2
Paenibacillus_mucilaginosus_KNP414 1
Paenibacillus_mucilaginosus_K02 1
Paenibacillus_polymyxa_CR1 3
Paenibacillus_polymyxa_SC2 1
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 1
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 1
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 1
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 2
Bacillus_amyloliquefaciens_LFB112 1
Bacillus_amyloliquefaciens_CC178 1
Bacillus_amyloliquefaciens_Y2 1
Bacillus_amyloliquefaciens_IT-45 1
Bacillus_amyloliquefaciens_XH7 1
Bacillus_amyloliquefaciens_LL3 1
Bacillus_amyloliquefaciens_TA208 1
Bacillus_amyloliquefaciens_DSM_7 1
Bacillus_licheniformis_9945A 2
Bacillus_subtilis_PY79 3
Bacillus_subtilis_XF-1 3
Bacillus_subtilis_QB928 3
Bacillus_subtilis_BSn5 4
Bacillus_subtilis_subsp._subtilis_str._BAB-1 3
Bacillus_subtilis_subsp._subtilis_str._BSP1 3
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 4
Bacillus_subtilis_subsp._subtilis_6051-HGW 3
Bacillus_subtilis_subsp._spizizenii_TU-B-10 5
Bacillus_subtilis_subsp._spizizenii_str._W23 3
Bacillus_subtilis_subsp._natto_BEST195 3
Bacillus_licheniformis_DSM_13_=_ATCC_14580 2
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 1
Bacillus_toyonensis_BCT-7112 2
Bacillus_thuringiensis_HD-771 2
Bacillus_thuringiensis_HD-789 3
Bacillus_thuringiensis_MC28 5
Bacillus_thuringiensis_serovar_chinensis_CT-43 3
Bacillus_thuringiensis_YBT-1518 3
Bacillus_thuringiensis_Bt407 3
Bacillus_thuringiensis_serovar_konkukian_str._97-27 3
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 3
Bacillus_thuringiensis_BMB171 2
Bacillus_thuringiensis_serovar_finitimus_YBT-020 2
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 3
Bacillus_cereus_FRI-35 3
Bacillus_cereus_biovar_anthracis_str._CI 3
Bacillus_cereus_AH820 3
Bacillus_cereus_AH187 2
Bacillus_cereus_B4264 3
Bacillus_cereus_G9842 3
Bacillus_cereus_Q1 2
Bacillus_cereus_F837/76 2
Bacillus_cereus_NC7401 2
Bacillus_cereus_E33L 4
Bacillus_cereus_ATCC_14579 3
Bacillus_cereus_ATCC_10987 2
Bacillus_anthracis_str._H9401 3
Bacillus_anthracis_str._CDC_684 3
Bacillus_anthracis_str._'Ames_Ancestor' 3
Bacillus_anthracis_str._Sterne 3
Bacillus_anthracis_str._Ames 3
Bacillus_megaterium_WSH-002 1
Bacillus_megaterium_QM_B1551 1
Desulfobacula_toluolica_Tol2 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Myxococcus_stipitatus_DSM_14675 1
Morganella_morganii_subsp._morganii_KT 1
Enterobacter_cloacae_subsp._cloacae_ENHKU01 1
Pseudomonas_protegens_CHA0 1
Pseudomonas_aeruginosa_SCV20265 1
Pseudomonas_aeruginosa_MTB-1 1
Pseudomonas_aeruginosa_LES431 1
Pseudomonas_aeruginosa_RP73 1
Pseudomonas_aeruginosa_B136-33 1
Pseudomonas_aeruginosa_PA1R 1
Pseudomonas_aeruginosa_PA1 1
Pseudomonas_aeruginosa_DK2 1
Pseudomonas_aeruginosa_NCGM2.S1 1
Pseudomonas_aeruginosa_M18 1
Pseudomonas_aeruginosa_LESB58 1
Pseudomonas_aeruginosa_PA7 1
Pseudomonas_aeruginosa_PAO1 1
Methanosarcina_mazei_Tuc01 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1
Candidatus_Methanomethylophilus_alvus_Mx1201 1

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 5
TargetDB__(Targets) 4
Protein_Data_Bank_(all_PDB_sequenc) 21
STRING_v9.0.5_(STRING) 227
Uniprot_2018_03_genome 18801
NCBI_2017_08_genome 21716
PDB_chains_(SCOP_1.75)_(PDB) 4

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