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Domain combinations for 47162,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47162 - Apolipoprotein

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Mus_musculus_76_38   (House mouse)   2
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Poecilia_formosa_76   (Amazon molly)   1
Crassostrea_gigas_22   (Pacific oyster)   0
Lottia_gigantea_   (Owl limpet)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 0
Amphimedon_queenslandica 1
Conidiobolus_coronatus_NRRL28638_v1.0 0
Verticillium_dahliae_VdLs.17_ 0
Candida_glabrata_CBS138 0
Zygosaccharomyces_rouxii_ 0
Selaginella_moellendorffii_ 0
Solanum_lycopersicum_v.2.3   (Tomato)   0
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Bigelowiella_natans_CCMP2755_22 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Paramecium_tetraurelia_ 0
Theileria_annulata 0
Acaryochloris_marina_MBIC11017 0
Cyanothece_sp._PCC_8802 1
Nostoc_punctiforme_PCC_73102 0
Nocardioides_sp._JS614 1
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 0
Chloroflexus_sp._MS-G 0
[Ruminococcus]_torques 0
Caldicellulosiruptor_kristjanssonii_177R1B 1
Lactobacillus_johnsonii_FI9785 1
Lactobacillus_gasseri_ATCC_33323 1
Streptococcus_gallolyticus_UCN34 1
Streptococcus_pseudopneumoniae_IS7493 1
Streptococcus_pasteurianus_ATCC_43144 1
Streptococcus_macedonicus_ACA-DC_198 1
Streptococcus_mitis_B6 1
Streptococcus_pneumoniae_P1031 1
Streptococcus_sanguinis_SK36 1
Streptococcus_oralis_Uo5 1
Streptococcus_gordonii_str._Challis_substr._CH1 1
Candidatus_Cloacamonas_acidaminovorans 0
Phycisphaera_mikurensis_NBRC_102666 1
Desulfobacca_acetoxidans_DSM_11109 0
Desulfovibrio_africanus_str._Walvis_Bay 0
Rhodobacter_capsulatus_SB_1003 0
Rhodospirillum_rubrum_F11 0
Pseudomonas_sp._VLB120 0
Ignisphaera_aggregans_DSM_17230 1
Thermosphaera_aggregans_DSM_11486 0

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Strains
Genome     Number
Hordeum_vulgare_22   (Domesticated barley)   1
Streptomyces_collinus_Tu_365 1
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1
Desulfotomaculum_gibsoniae_DSM_7213 0
Lactobacillus_johnsonii_N6.2 1
Lactobacillus_johnsonii_NCC_533 1
Streptococcus_anginosus_C238 1
Streptococcus_anginosus_C1051 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 1
Streptococcus_pneumoniae_A026 1
Streptococcus_pneumoniae_ST556 1
Streptococcus_pneumoniae_SPNA45 1
Streptococcus_pneumoniae_SPN994039 1
Streptococcus_pneumoniae_SPN994038 1
Streptococcus_pneumoniae_SPN034183 1
Streptococcus_pneumoniae_SPN034156 1
Streptococcus_pneumoniae_INV104 1
Streptococcus_pneumoniae_INV200 1
Streptococcus_pneumoniae_OXC141 1
Streptococcus_pneumoniae_gamPNI0373 1
Streptococcus_pneumoniae_AP200 1
Streptococcus_pneumoniae_ATCC_700669 1
Streptococcus_pneumoniae_TCH8431/19A 1
Streptococcus_pneumoniae_CGSP14 1
Streptococcus_pneumoniae_G54 1
Streptococcus_pneumoniae_JJA 1
Streptococcus_pneumoniae_70585 1
Streptococcus_pneumoniae_Hungary19A-6 1
Streptococcus_pneumoniae_Taiwan19F-14 1
Streptococcus_pneumoniae_D39 1
Streptococcus_pneumoniae_670-6B 1
Streptococcus_pneumoniae_R6 1
Streptococcus_pneumoniae_TIGR4 1
Burkholderia_cenocepacia_J2315 0
Wolbachia_endosymbiont_of_Drosophila_simulans_wNo 0
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1

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Longest transcript per gene
Genome     Number
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
NCBI_plasmid_sequences_(Plasmids) 3
TargetDB__(Targets) 1
UniProt__viral_sequences_(Viral) 0
STRING_v9.0.5_(STRING) 18
Uniprot_2018_03_genome 1290
NCBI_2017_08_genome 8589
NCBI_viral_sequences_(Viral) 0
Protozoadb_2010_08_(Protozoadb) 0

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