SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 47413,53850 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47413 - lambda repressor-like DNA-binding domains
53850 - Periplasmic binding protein-like II

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Anabaena_variabilis_ATCC_29413 2
'Nostoc_azollae'_0708 1
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7524 1
Thermomicrobium_roseum_DSM_5159 0
Sphaerobacter_thermophilus_DSM_20745 1
Deinococcus_gobiensis_I-0 1
Thermaerobacter_marianensis_DSM_12885 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 1
Planctomyces_limnophilus_DSM_3776 1
Methylacidiphilum_infernorum_V4 1
Hydrogenobacter_thermophilus_TK-6 1
Candidatus_Solibacter_usitatus_Ellin6076 1
Candidatus_Nitrospira_defluvii 1
Syntrophobacter_fumaroxidans_MPOB 1
Desulfatibacillum_alkenivorans_AK-01 1
Pelobacter_propionicus_DSM_2379 1
Pelobacter_carbinolicus_DSM_2380 1
Haliangium_ochraceum_DSM_14365 1
Sorangium_cellulosum_'So_ce_56' 1

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Strains
Genome     Number
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Chamaesiphon_minutus_PCC_6605 1
Oscillatoria_acuminata_PCC_6304 1
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7424 1
Stanieria_cyanosphaera_PCC_7437 1
Cylindrospermum_stagnale_PCC_7417 1
Deinococcus_peraridilitoris_DSM_19664 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 1
Hydrogenobacter_thermophilus_TK-6 1
Sorangium_cellulosum_So0157-2 1

Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 0
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 14
NCBI_2017_08_genome 122
Uniprot_2018_03_genome 471
Protein_Data_Bank_(all_PDB_sequenc) 1

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