SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 47576,57716,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47576 - Calponin-homology domain, CH-domain
57716 - Glucocorticoid receptor-like (DNA-binding domain)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_76_3   (Small-eared galago)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Saccoglossus_kowalevskii_v3.0 4
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_76_1   (Coelacanth)   0
Lepisosteus_oculatus_76   (Spotted gar)   1
Gadus_morhua_76_1   (Atlantic cod)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   5
Oryzias_latipes_76_1   (Japanese medaka)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   2
Poecilia_formosa_76   (Amazon molly)   2
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Astyanax_mexicanus_76   (Mexican tetra)   2
Danio_rerio_76_9   (Zebrafish)   4
Crassostrea_gigas_22   (Pacific oyster)   0
Heliconius_melpomene_   (Postman butterfly)   1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   1
Drosophila_erecta_1.3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   1
Schistosoma_mansoni_ 1
Acropora_digitifera_v1.0 1
Hydra_vulgaris 1
Bigelowiella_natans_CCMP2755_22 1
Emiliania_huxleyi_CCMP1516_ 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1

Longest transcript per gene
Genome     Number
Macaca_mulatta_69_1   (Rhesus monkey)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Tupaia_belangeri_69   (Northern tree shrew)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   0
Gadus_morhua_69_1   (Atlantic cod)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Takifugu_rubripes_69_4   (Torafugu)   2
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   2
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   2
Drosophila_melanogaster_69_5   (Fruit fly)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 12
Uniprot_2018_03_genome 648
NCBI_2017_08_genome 217

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