SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 47576,81296,81296,81296,81296,81296,81296,81296,81296,81296,81296,81296,81296,81296,81296,81296,81296,81296,81296,81296,_gap_,81296,81296,81296,81296,81296 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47576 - Calponin-homology domain, CH-domain
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains
81296 - E set domains

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Macaca_mulatta_76_1   (Rhesus monkey)   2
Mus_musculus_76_38   (House mouse)   2
Canis_familiaris_76_3.1   (Dog)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Danio_rerio_76_9   (Zebrafish)   1

Longest transcript per gene
Genome     Number
Macaca_mulatta_69_1   (Rhesus monkey)   1
Mus_musculus_69_38   (House mouse)   1
Canis_familiaris_69_3.1   (Dog)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   1

Others
Genome     Number
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 3
Uniprot_2018_03_genome 3960
NCBI_2017_08_genome 136

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