SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 47576,_gap_,46966,46966,46966,46966,46966,46966,_gap_,46966,_gap_,46966,46966,_gap_,46966,_gap_,46966,46966,46966,_gap_,50729 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47576 - Calponin-homology domain, CH-domain
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
50729 - PH domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   4
Papio_anubis_76   (Olive baboon)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   2
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Pteropus_vampyrus_76_1   (Large flying fox)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2
Homo_sapiens__(NCBI_version)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Uniprot_2018_03_genome 2580
NCBI_2017_08_genome 29
STRING_v9.0.5_(STRING) 3

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