SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 47943,47353,57756,50630 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47943 - Retrovirus capsid protein, N-terminal core domain
47353 - Retrovirus capsid dimerization domain-like
57756 - Retrovirus zinc finger-like domains
50630 - Acid proteases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Ovis_aries_76_3.1   (Sheep)   5
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   13

Longest transcript per gene
Genome     Number
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   12

Others
Genome     Number
NCBI_viral_sequences_(Viral) 0
NCBI_2017_08_genome 0
UniProt__viral_sequences_(Viral) 2
Uniprot_2018_03_genome 210

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