SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 48295,46689 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48295 - TrpR-like
46689 - Homeodomain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Lottia_gigantea_   (Owl limpet)   0
Strigamia_maritima_22 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Pristionchus_pacificus_ 0
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Meloidogyne_hapla_ 1
Onchocerca_volvulus_22 0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Caenorhabditis_japonica_ 1
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   0
Acropora_digitifera_v1.0 0
Amphimedon_queenslandica 1
Trichoplax_adhaerens_ 1
Melampsora_laricis-populina_ 0
Phytophthora_sojae_1.1 0
Segniliparus_rotundus_DSM_44985 0
Bifidobacterium_bifidum_S17 0
Desulfosporosinus_orientis_DSM_765 0
Clostridium_saccharolyticum_WM1 0
Clostridium_lentocellum_DSM_5427 1
[Ruminococcus]_torques 1
Aerococcus_urinae_ACS-120-V-Col10a 0
Leuconostoc_gasicomitatum_LMG_18811 2
Lactobacillus_johnsonii_FI9785 1
Lactobacillus_ruminis_ATCC_27782 1
Lactobacillus_fermentum_IFO_3956 1
Lactobacillus_reuteri_DSM_20016 2
Lactobacillus_buchneri_NRRL_B-30929 0
Pediococcus_claussenii_ATCC_BAA-344 0
Lactococcus_lactis_subsp._cremoris_MG1363 0
Exiguobacterium_sibiricum_255-15 0
Solibacillus_silvestris_StLB046 0
Bacillus_cellulosilyticus_DSM_2522 0
Leadbetterella_byssophila_DSM_17132 2
Alistipes_finegoldii_DSM_17242 1
Sphaerochaeta_pleomorpha_str._Grapes 0
Thermotoga_thermarum_DSM_5069 1
Acidobacterium_capsulatum_ATCC_51196 0
Burkholderia_xenovorans_LB400 0
Burkholderia_multivorans_ATCC_17616 0
Herminiimonas_arsenicoxydans 0
Bordetella_petrii_DSM_12804 4
Vibrio_vulnificus_MO6-24/O 1
Halorhodospira_halophila_SL1 0
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 9
Yersinia_pestis_Pestoides_F 1
Escherichia_blattae_DSM_4481 0
Pseudomonas_syringae_pv._tomato_str._DC3000 5
Psychrobacter_arcticus_273-4 3
Psychrobacter_cryohalolentis_K5 6

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Strains
Genome     Number
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Clostridium_difficile_BI1 0
Clostridium_difficile_R20291 0
Clostridium_difficile_CD196 0
Clostridium_autoethanogenum_DSM_10061 0
Enterococcus_casseliflavus_EC20 0
Enterococcus_faecalis_D32 0
Lactobacillus_rhamnosus_LOCK900 0
Lactobacillus_fermentum_F-6 8
Lactobacillus_reuteri_TD1 0
Lactobacillus_reuteri_I5007 0
Lactobacillus_reuteri_JCM_1112 2
Lactobacillus_plantarum_16 0
Lactobacillus_plantarum_subsp._plantarum_P-8 0
Lactobacillus_helveticus_R0052 0
Lactobacillus_helveticus_H10 0
Lactobacillus_brevis_KB290 0
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 0
Lactococcus_lactis_subsp._lactis_IO-1 0
Lactococcus_lactis_subsp._lactis_KF147 1
Lactococcus_lactis_subsp._cremoris_UC509.9 0
Lactococcus_lactis_subsp._cremoris_A76 0
Lactococcus_lactis_subsp._cremoris_NZ9000 0
Lactococcus_lactis_subsp._cremoris_SK11 0
Streptococcus_thermophilus_JIM_8232 0
Paenibacillus_larvae_subsp._larvae_DSM_25430 9
Paenibacillus_polymyxa_E681 1
Amphibacillus_xylanus_NBRC_15112 1
Bacillus_thuringiensis_HD-771 2
Bacillus_thuringiensis_HD-789 1
Bacillus_thuringiensis_MC28 2
Bacillus_thuringiensis_serovar_chinensis_CT-43 3
Bacillus_thuringiensis_YBT-1518 1
Bacillus_thuringiensis_Bt407 3
Bacillus_thuringiensis_serovar_konkukian_str._97-27 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1
Bacillus_thuringiensis_BMB171 3
Bacillus_thuringiensis_serovar_finitimus_YBT-020 0
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 3
Bacillus_cereus_G9842 1
Bacillus_cereus_Q1 1
Bacillus_cereus_E33L 2
Bacillus_cereus_ATCC_14579 1
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 0
Staphylococcus_aureus_subsp._aureus_LGA251 2
Staphylococcus_aureus_subsp._aureus_55/2053 2
Staphylococcus_aureus_subsp._aureus_TCH60 1
Staphylococcus_aureus_subsp._aureus_MRSA252 0
Burkholderia_cenocepacia_J2315 0
Burkholderia_multivorans_ATCC_17616 0
Variovorax_paradoxus_B4 0
Rhizobium_tropici_CIAT_899 0
Vibrio_nigripulchritudo_VibrioScope 6
Yersinia_pseudotuberculosis_PB1/+ 3
Yersinia_pseudotuberculosis_IP_32953 3
Yersinia_pestis_biovar_Microtus_str._91001 7
Yersinia_pestis_A1122 7
Yersinia_pestis_Z176003 7
Yersinia_pestis_D182038 8
Yersinia_pestis_D106004 7
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 8
Yersinia_pestis_Nepal516 8
Yersinia_pestis_Antiqua 7
Yersinia_pestis_Angola 8
Yersinia_pestis_CO92 7
Yersinia_pestis_KIM10+ 8
Dickeya_dadantii_3937 3
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1
Klebsiella_pneumoniae_JM45 5
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 6
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 1
Escherichia_coli_O7:K1_str._CE10 3
Escherichia_coli_str._'clone_D_i2' 2
Escherichia_coli_str._'clone_D_i14' 2
Escherichia_coli_042 6
Escherichia_coli_ABU_83972 2
Escherichia_coli_IAI39 22
Escherichia_coli_UMN026 5
Escherichia_coli_SE15 1
Escherichia_coli_536 6
Escherichia_coli_CFT073 2
Escherichia_coli_O127:H6_str._E2348/69 4
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 1
Pseudomonas_syringae_pv._syringae_B728a 4
Acinetobacter_sp.__SH024 1

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Longest transcript per gene
Genome     Number
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0

Others
Genome     Number
Loa_loa_v3.3_(Request)   (Eye worm)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
NCBI_plasmid_sequences_(Plasmids) 11
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 131
Uniprot_2018_03_genome 2169
NCBI_2017_08_genome 3583

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