SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 48403,57850 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48403 - Ankyrin repeat
57850 - RING/U-box

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Papio_anubis_76   (Olive baboon)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Takifugu_rubripes_76_4   (Torafugu)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Poecilia_formosa_76   (Amazon molly)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 1
Octopus_bimaculoides_280 1
Helobdella_robusta_ 0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Caenorhabditis_japonica_ 0
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Amphimedon_queenslandica 0
Magnaporthe_poae_ATCC_64411_22 1
Chaetomium_globosum_CBS_148.51_ 0
Glomerella_graminicola_22 0
Fusarium_graminearum_ 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Fusarium_verticillioides_7600_ 0
Trichoderma_harzianum_CBS_226.95_v1.0 1
Botrytis_cinerea_B05.10_ 1
Didymella_exigua_CBS_183.55_v1.0 0
Stagonospora_nodorum_ 0
Aspergillus_zonatus_v1.0 1
Aspergillus_fumigatus_Af293 0
Aspergillus_brasiliensis_v1.0 0
Aspergillus_nidulans_FGSC_A4_ 0
Aspergillus_glaucus 1
Aspergillus_tubingensis_v1.0 1
Aspergillus_wentii_v1.0 0
Aspergillus_niger_22 1
Selaginella_moellendorffii_ 2
Pinus_taeda   (Loblolly pine)   0
Picea_abies   (Norway spruce)   0
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 0
Citrus_clementina_v165 0
Citrus_sinensis_v154   (Sweet orange)   0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Carica_papaya_   (Papaya)   0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   1
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   0
Prunus_persica_v139   (Peach)   0
Linum_usitatissimum_v200   (Flax)   0
Manihot_esculenta_v147   (Cassava)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Solanum_lycopersicum_v.2.3   (Tomato)   0
Solanum_tuberosum_   (Potato)   0
Actinidia_chinensis_Hongyang_ 0
Aquilegia_coerulea_v195 0
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   0
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   1
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 1
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Panicum_virgatum_v202   (Switchgrass)   1
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Amborella_trichopoda_22 0
Physcomitrella_patens 1
Chlorella_variabilis_sp._NC64A_ 3
Chlamydomonas_reinhardtii_4.0 0
Micromonas_pusilla_CCMP1545_v3.0 0
Bigelowiella_natans_CCMP2755_22 1
Giardia_lamblia_2.3 6
Ectocarpus_siliculosus 0
Thalassiosira_pseudonana_CCMP1335 0
Tetrahymena_thermophila_SB210_1_ 1
Symbiodinium_minutum_clade_B1_v1.2 1
Trichomonas_vaginalis_ 3
Emiliania_huxleyi_CCMP1516_ 3
Candidatus_Cardinium_hertigii 0

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Hordeum_vulgare_22   (Domesticated barley)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0

Longest transcript per gene
Genome     Number
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Gadus_morhua_69_1   (Atlantic cod)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Takifugu_rubripes_69_4   (Torafugu)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Oryzias_latipes_69_1   (Japanese medaka)   0
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 0
Malus_x_domestica_(Duplicate)   (Apple)   0
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
NCBI_plasmid_sequences_(Plasmids) 0
Protozoadb_2010_08_(Protozoadb) 18
STRING_v9.0.5_(STRING) 7
NCBI_2017_08_genome 44
NCBI_viral_sequences_(Viral) 0
Uniprot_2018_03_genome 363
UniProt__viral_sequences_(Viral) 0
TargetDB__(Targets) 0

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