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Domain combinations for 48403,_gap_,57850,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48403 - Ankyrin repeat
57850 - RING/U-box

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Ochotona_princeps_76   (American pika)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Saccoglossus_kowalevskii_v3.0 0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_76_1   (Coelacanth)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Danio_rerio_76_9   (Zebrafish)   0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Octopus_bimaculoides_280 1
Capitella_sp._I_ 0
Strigamia_maritima_22 0
Caenorhabditis_remanei_ 0
Hymenolepis_microstoma_ 0
Echinococcus_multilocularis_ 0
Taenia_solium_   (Pork tapeworm)   0
Proterospongia_sp._ATCC_50818_ 1
Apiospora_montagnei_NRRL_25634_v1.0 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Trichoderma_harzianum_CBS_226.95_v1.0 0
Aspergillus_terreus_NIH2624_ 0
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Malus_domestica_v196   (Apple)   1
Solanum_tuberosum_   (Potato)   1
Triticum_aestivum_22   (Bread wheat)   3
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2
Zea_mays_subsp._mays_   (Maize)   2
Zea_mays_v181   (Maize)   4
Musa_balbisiana   (Balbis banana)   1
Volvox_carteri_f._nagariensis_ 2
Volvox_carteri_v199 2
Chlamydomonas_reinhardtii_4.0 1
Micromonas_sp._RCC299_ 0
Micromonas_pusilla_CCMP1545_v3.0 1
Thecamonas_trahens_ATCC_50062_ 0
Giardia_lamblia_2.3 1
Ectocarpus_siliculosus 1
Aureococcus_anophagefferens_ 0
Pythium_iwayamai_DAOM_BR242034_22 2
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 1
Pythium_irregulare_DAOM_BR486_22 0
Phytophthora_sojae_1.1 2
Fragilariopsis_cylindrus 0
Tetrahymena_thermophila_SB210_1_ 0
Symbiodinium_minutum_clade_B1_v1.2 2
Emiliania_huxleyi_CCMP1516_ 2

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0

Longest transcript per gene
Genome     Number
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Ochotona_princeps_69   (American pika)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   0
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_69_1   (Coelacanth)   0
Gadus_morhua_69_1   (Atlantic cod)   0
Danio_rerio_69_9   (Zebrafish)   0
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   1
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Protozoadb_2010_08_(Protozoadb) 2
STRING_v9.0.5_(STRING) 4
NCBI_2017_08_genome 19
Uniprot_2018_03_genome 270

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