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Domain combinations for 48439,48452 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48439 - Protein prenylyltransferase
48452 - TPR-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Mus_musculus_76_38   (House mouse)   0
Ochotona_princeps_76   (American pika)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Felis_catus_76_6.2   (Domestic cat)   0
Saccoglossus_kowalevskii_v3.0 2
Meleagris_gallopavo_76_2   (Turkey)   0
Gallus_gallus_76_4   (Chicken)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Danio_rerio_76_9   (Zebrafish)   0
Capitella_sp._I_ 0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Rhodnius_prolixus_22 0
Daphnia_pulex_   (Common water flea)   0
Strigamia_maritima_22 0
Trichoplax_adhaerens_ 0
Proterospongia_sp._ATCC_50818_ 0
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Punctularia_strigosozonata_v1.0 0
Wolfiporia_cocos_MD-104_SS10__v1.0 0
Dothistroma_septosporum 0
Linum_usitatissimum_v200   (Flax)   0
Triticum_aestivum_22   (Bread wheat)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Sorghum_bicolor_   (Sorghum)   0
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Chlorella_vulgaris_ 0
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Albugo_laibachii_22 0
Pythium_arrhenomanes_ATCC_12531_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 0
Paramecium_tetraurelia_ 1
Tetrahymena_thermophila_SB210_1_ 1
Naegleria_gruberi_ 0
Guillardia_theta_CCMP2712_v1.0_ 0
Trichodesmium_erythraeum_IMS101 0
Microcystis_aeruginosa_NIES-843 0
Sphaerobacter_thermophilus_DSM_20745 0
Herpetosiphon_aurantiacus_DSM_785 0
Chloroflexus_aggregans_DSM_9485 1
Paenibacillus_sp._JDR-2 0
Ignavibacterium_album_JCM_16511 1
Chlorobium_phaeobacteroides_DSM_266 0
Chlorobaculum_parvum_NCIB_8327 1
Chloroherpeton_thalassium_ATCC_35110 1
Rhodothermus_marinus_DSM_4252 0
Opitutus_terrae_PB90-1 0
Brachyspira_murdochii_DSM_12563 1
Brachyspira_intermedia_PWS/A 1
Brachyspira_pilosicoli_95/1000 0
Ralstonia_solanacearum_CFBP2957 0
Burkholderia_cenocepacia_HI2424 0
Burkholderia_gladioli_BSR3 0
Delftia_acidovorans_SPH-1 0
Candidatus_Puniceispirillum_marinum_IMCC1322 0
Rickettsia_felis_URRWXCal2 0
Beijerinckia_indica_subsp._indica_ATCC_9039 0
Hyphomicrobium_sp._MC1 1
Bradyrhizobium_japonicum_USDA_110 1
Methanosaeta_harundinacea_6Ac 0
Methanosaeta_concilii_GP6 1
Methanococcoides_burtonii_DSM_6242 0
Methanosarcina_acetivorans_C2A 0
Methanosarcina_barkeri_str._Fusaro 1
Methanohalophilus_mahii_DSM_5219 0
Methanospirillum_hungatei_JF-1 1
Methanoculleus_bourgensis_MS2 0
Methanoculleus_marisnigri_JR1 0
methanocaldococcus_infernus_ME 1
Methanothermobacter_thermautotrophicus_str._Delta_H 0
Methanobrevibacter_smithii_ATCC_35061 1

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Strains
Genome     Number
Batrachochytrium_dendrobatidis_JEL423_ 0
Chamaesiphon_minutus_PCC_6605 0
Synechococcus_sp._JA-3-3Ab 0
Prochlorococcus_marinus_str._MIT_9303 1
Oscillatoria_nigro-viridis_PCC_7112 0
Oscillatoria_acuminata_PCC_6304 1
Cyanothece_sp._PCC_7424 1
Cylindrospermum_stagnale_PCC_7417 0
Rhodothermus_marinus_SG0.5JP17-172 0
Brachyspira_pilosicoli_WesB 0
Brachyspira_pilosicoli_B2904 0
Bdellovibrio_exovorus_JSS 0
Sorangium_cellulosum_So0157-2 0
Ralstonia_solanacearum_FQY_4 0
Ralstonia_solanacearum_Po82 0
Burkholderia_cenocepacia_MC0-3 0
Burkholderia_cenocepacia_AU_1054 0
Methanosarcina_mazei_Tuc01 0
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1
Methanobacterium_sp._SWAN-1 0

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Longest transcript per gene
Genome     Number
Mus_musculus_69_38   (House mouse)   0
Ochotona_princeps_69   (American pika)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Felis_catus_69   (Domestic cat)   1
Meleagris_gallopavo_69_2   (Turkey)   0
Gallus_gallus_69_2   (Chicken)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Oryzias_latipes_69_1   (Japanese medaka)   0
Danio_rerio_69_9   (Zebrafish)   0

Others
Genome     Number
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
NCBI_plasmid_sequences_(Plasmids) 0
STRING_v9.0.5_(STRING) 11
Uniprot_2018_03_genome 513
NCBI_2017_08_genome 133
Protein_Data_Bank_(all_PDB_sequenc) 0
TargetDB__(Targets) 0

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