SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 48452,144232,82199 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48452 - TPR-like
144232 - HIT/MYND zinc finger-like
82199 - SET domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Saccoglossus_kowalevskii_v3.0 0
Anolis_carolinensis_76_2.0   (Green anole)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Adineta_vaga 3
Octopus_bimaculoides_280 0
Lottia_gigantea_   (Owl limpet)   0
Helobdella_robusta_ 0
Capitella_sp._I_ 0
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   0
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2
Atta_cephalotes_v1.1 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   1
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   5
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   27
Anopheles_darlingi_22   (American malaria mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   11
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Acyrthosiphon_pisum_   (Pea aphid)   0
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   2
Strigamia_maritima_22 0
Sarcoptes_scabiei 0
Tetranychus_urticae_   (Two-spotted spider mite)   2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   0
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Hydra_vulgaris 0
Trichoderma_atroviride_ 1
Dictyostelium_discoideum 1
Dictyostelium_purpureum_ 0
Selaginella_moellendorffii_ 0
Eucalyptus_grandis_v201   (Rose gum)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Triticum_aestivum_22   (Bread wheat)   0
Musa_balbisiana   (Balbis banana)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Naegleria_gruberi_ 0

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   11
Hordeum_vulgare_22   (Domesticated barley)   0

Longest transcript per gene
Genome     Number
Anolis_carolinensis_69_2.0   (Green anole)   0
Gadus_morhua_69_1   (Atlantic cod)   0
Drosophila_melanogaster_69_5   (Fruit fly)   1
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
STRING_v9.0.5_(STRING) 56
NCBI_2017_08_genome 307
Uniprot_2018_03_genome 1818
TargetDB__(Targets) 0

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