SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 48452,48452,48439 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48452 - TPR-like
48452 - TPR-like
48439 - Protein prenylyltransferase

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Rattus_norvegicus_76_5.0   (Norway rat)   1
Felis_catus_76_6.2   (Domestic cat)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Saccoglossus_kowalevskii_v3.0 0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Atta_cephalotes_v1.1 0
Citrus_sinensis_v154   (Sweet orange)   1
Triticum_urartu_22 0
Pythium_arrhenomanes_ATCC_12531_22 0
Paramecium_tetraurelia_ 2
Tetrahymena_thermophila_SB210_1_ 0
Ichthyophthirius_multifiliis_strain_G5_ 0
Guillardia_theta_CCMP2712_v1.0_ 0
Acaryochloris_marina_MBIC11017 0
Rivularia_sp._PCC_7116 0
Nostoc_sp._PCC_7107 1
Alistipes_finegoldii_DSM_17242 0
Parachlamydia_acanthamoebae_UV-7 1
Brachyspira_murdochii_DSM_12563 2
Brachyspira_intermedia_PWS/A 0
Brachyspira_hyodysenteriae_WA1 1
Pelobacter_carbinolicus_DSM_2380 1
Dinoroseobacter_shibae_DFL_12 1
Methanohalobium_evestigatum_Z-7303 1
Methanosarcina_acetivorans_C2A 1
Methanosarcina_mazei_Go1 0
Methanospirillum_hungatei_JF-1 1
Methanoculleus_marisnigri_JR1 0

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Strains
Genome     Number
Prochlorococcus_marinus_str._MIT_9303 0
Oscillatoria_nigro-viridis_PCC_7112 0
Cyanothece_sp._PCC_7424 0
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Anabaena_cylindrica_PCC_7122 0
Methanosarcina_mazei_Tuc01 0
Methanoregula_formicica_Methanoregula_formicicum_SMSP 0

Longest transcript per gene
Genome     Number
Rattus_norvegicus_69_3.4   (Norway rat)   1
Procavia_capensis_69_1   (Cape rock hyrax)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Oryzias_latipes_69_1   (Japanese medaka)   0

Others
Genome     Number
STRING_v9.0.5_(STRING) 7
Uniprot_2018_03_genome 315
NCBI_2017_08_genome 89
TargetDB__(Targets) 1
Protein_Data_Bank_(all_PDB_sequenc) 0

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