SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 48592,52029,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48592 - GroEL equatorial domain-like
52029 - GroEL apical domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   2
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3
Papio_anubis_76   (Olive baboon)   2
Macaca_mulatta_76_1   (Rhesus monkey)   3
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   4
Otolemur_garnettii_76_3   (Small-eared galago)   3
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   3
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   4
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ochotona_princeps_76   (American pika)   2
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   3
Bos_taurus_76_3.1   (Cattle)   1
Ovis_aries_76_3.1   (Sheep)   4
Vicugna_pacos_76_1   (Alpaca)   3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Canis_familiaris_76_3.1   (Dog)   3
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   1
Pteropus_vampyrus_76_1   (Large flying fox)   2
Sorex_araneus_76_1   (European shrew)   2
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   2
Loxodonta_africana_76_3   (African savanna elephant)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   2
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   2
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_76_5   (Platypus)   3
Saccoglossus_kowalevskii_v3.0 2
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Meleagris_gallopavo_76_2   (Turkey)   1
Gallus_gallus_76_4   (Chicken)   2
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_76_2.0   (Green anole)   3
Xenopus_laevis_   (African clawed frog)   3
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_76_1   (Coelacanth)   3
Lepisosteus_oculatus_76   (Spotted gar)   1
Gadus_morhua_76_1   (Atlantic cod)   2
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2
Takifugu_rubripes_76_4   (Torafugu)   2
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   2
Oryzias_latipes_76_1   (Japanese medaka)   2
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   3
Poecilia_formosa_76   (Amazon molly)   3
Oreochromis_niloticus_76_1.0   (Nile tilapia)   3
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3
Octopus_bimaculoides_280 1
Crassostrea_gigas_22   (Pacific oyster)   1
Lottia_gigantea_   (Owl limpet)   2
Capitella_sp._I_ 2
Heliconius_melpomene_   (Postman butterfly)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Drosophila_willistoni_1.3 1
Drosophila_suzukii 1
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   2
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   0
Sarcoptes_scabiei 1
Acropora_digitifera_v1.0 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   3
Amphimedon_queenslandica 1
Trichoplax_adhaerens_ 2
Postia_placenta_ 1
Trichoderma_citrinoviride_v1.0 2
Botrytis_cinerea_B05.10_ 1
Paracoccidioides_brasiliensis_Pb18_ 1
Schizosaccharomyces_japonicus_yFS275_ 1
Allomyces_macrogynus_ATCC_38327_ 0
Dictyostelium_purpureum_ 2
Pinus_taeda   (Loblolly pine)   1
Gossypium_raimondii_v221 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1
Medicago_truncatula_   (Barrel medic)   2
Cucumis_sativus_v122   (Cucumber)   0
Malus_domestica_v196   (Apple)   1
Linum_usitatissimum_v200   (Flax)   1
Aquilegia_coerulea_v195 0
Oryza_barthii_22   (African wild rice)   1
Oryza_meridionalis_22 6
Oryza_glumaepatula_22 0
Oryza_punctata_22 2
Oryza_nivara_22 1
Amborella_trichopoda_22 1
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Bigelowiella_natans_CCMP2755_22 2
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_ultimum_v1.7-2 2
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_irregulare_DAOM_BR486_22 2
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_infestans_T30-4_ 2
Paramecium_tetraurelia_ 1
Naegleria_gruberi_ 1
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 3
Thermobaculum_terrenum_ATCC_BAA-798 1
Gloeobacter_violaceus_PCC_7421 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1
Thermomicrobium_roseum_DSM_5159 1
Candidatus_Desulforudis_audaxviator_MP104C 1
Thermincola_potens_JR 1
Pelotomaculum_thermopropionicum_SI 1
Desulfotomaculum_reducens_MI-1 1
Desulfotomaculum_acetoxidans_DSM_771 1
Desulfotomaculum_kuznetsovii_DSM_6115 1
Desulfotomaculum_carboxydivorans_CO-1-SRB 1
Desulfotomaculum_ruminis_DSM_2154 1
Heliobacterium_modesticaldum_Ice1 1
Thermosediminibacter_oceani_DSM_16646 1
Tepidanaerobacter_acetatoxydans_Re1 1
Carboxydothermus_hydrogenoformans_Z-2901 1
Ammonifex_degensii_KC4 1
Paenibacillus_mucilaginosus_3016 1
Chlamydophila_pecorum_E58 1
Chlamydia_muridarum_Nigg 2
Chlamydophila_pneumoniae_TW-183 2
Chlamydophila_caviae_GPIC 1
Chlamydophila_felis_Fe/C-56 1
Chlamydophila_abortus_S26/3 1
Chlamydia_psittaci_01DC11 1
Chlamydia_trachomatis_B/Jali20/OT 2
Mesorhizobium_sp._BNC1 1
Methanosalsum_zhilinae_DSM_4017 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2
Paracoccidioides_brasiliensis_Pb03_ 1
Batrachochytrium_dendrobatidis_JAM81_ 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1
Paenibacillus_sp._Y412MC10 1
Paenibacillus_mucilaginosus_KNP414 1
Paenibacillus_mucilaginosus_K02 1
Chlamydia_pecorum_P787 1
Chlamydia_pecorum_W73 1
Chlamydia_pecorum_PV3056/3 1
Chlamydophila_pneumoniae_LPCoLN 2
Chlamydophila_pneumoniae_J138 2
Chlamydophila_pneumoniae_CWL029 2
Chlamydophila_pneumoniae_AR39 2
Chlamydia_psittaci_01DC12 1
Chlamydia_psittaci_WC 1
Chlamydia_psittaci_M56 1
Chlamydia_psittaci_WS/RT/E30 1
Chlamydia_psittaci_VS225 1
Chlamydia_psittaci_MN 1
Chlamydia_psittaci_GR9 1
Chlamydia_psittaci_84/55 1
Chlamydia_psittaci_08DC60 1
Chlamydia_psittaci_02DC15 1
Chlamydia_psittaci_C19/98 1
Chlamydia_psittaci_NJ1 1
Chlamydia_psittaci_CP3 1
Chlamydophila_psittaci_RD1 1
Chlamydia_psittaci_Mat116 1
Chlamydophila_psittaci_6BC 1
Chlamydophila_psittaci_6BC 1
Chlamydia_trachomatis_C/TW-3 2
Chlamydia_trachomatis_L2/434/Bu(f) 2
Chlamydia_trachomatis_L2/434/Bu(i) 2
Chlamydia_trachomatis_IU888 2
Chlamydia_trachomatis_IU824 2
Chlamydia_trachomatis_L2b/Canada2 2
Chlamydia_trachomatis_L2b/Canada1 2
Chlamydia_trachomatis_L3/404/LN 2
Chlamydia_trachomatis_L2b/Ams5 2
Chlamydia_trachomatis_L2b/Ams4 2
Chlamydia_trachomatis_L2b/Ams3 2
Chlamydia_trachomatis_L2b/Ams2 2
Chlamydia_trachomatis_L2b/Ams1 2
Chlamydia_trachomatis_L2b/795 2
Chlamydia_trachomatis_L2b/CV204 2
Chlamydia_trachomatis_L2b/LST 2
Chlamydia_trachomatis_L2b/UCH-2 2
Chlamydia_trachomatis_L2b/8200/07 2
Chlamydia_trachomatis_L2/25667R 2
Chlamydia_trachomatis_L1/224 2
Chlamydia_trachomatis_L1/115 2
Chlamydia_trachomatis_L1/440/LN 2
Chlamydia_trachomatis_K/SotonK1 2
Chlamydia_trachomatis_Ia/SotonIa3 2
Chlamydia_trachomatis_Ia/SotonIa1 2
Chlamydia_trachomatis_G/SotonG1 2
Chlamydia_trachomatis_F/SotonF3 2
Chlamydia_trachomatis_F/SW5 2
Chlamydia_trachomatis_F/SW4 2
Chlamydia_trachomatis_E/SotonE8 2
Chlamydia_trachomatis_E/SotonE4 2
Chlamydia_trachomatis_E/SW3 2
Chlamydia_trachomatis_D/SotonD6 2
Chlamydia_trachomatis_D/SotonD5 2
Chlamydia_trachomatis_D/SotonD1 2
Chlamydia_trachomatis_A/5291 2
Chlamydia_trachomatis_A/363 2
Chlamydia_trachomatis_RC-J/971 2
Chlamydia_trachomatis_RC-L2/55 2
Chlamydia_trachomatis_J/6276tet1 2
Chlamydia_trachomatis_RC-J/966 2
Chlamydia_trachomatis_RC-J(s)/122 2
Chlamydia_trachomatis_RC-F(s)/342 2
Chlamydia_trachomatis_RC-L2(s)/3 2
Chlamydia_trachomatis_RC-J/953 2
Chlamydia_trachomatis_RC-J943 2
Chlamydia_trachomatis_RC-Fs852 2
Chlamydia_trachomatis_RC-L2s46 2
Chlamydia_trachomatis_RC-F69 2
Chlamydia_trachomatis_L2c 2
Chlamydia_trachomatis_D-LC 2
Chlamydia_trachomatis_D-EC 2
Chlamydia_trachomatis_G/9301 2
Chlamydia_trachomatis_G/11074 2
Chlamydia_trachomatis_G/11222 2
Chlamydia_trachomatis_G/9768 2
Chlamydia_trachomatis_E/150 2
Chlamydia_trachomatis_E/11023 2
Chlamydia_trachomatis_B/TZ1A828/OT 2
Chlamydia_trachomatis_Sweden2 2
Chlamydia_trachomatis_E/Bour 2
Chlamydia_trachomatis_A2497 2
Chlamydia_trachomatis_A2497 2
Chlamydia_trachomatis_L2b/UCH-1/proctitis 2
Chlamydia_trachomatis_434/Bu 2
Chlamydia_trachomatis_A/HAR-13 2
Chlamydia_trachomatis_D/UW-3/CX 2
Methanomethylovorans_hollandica_DSM_15978 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   2
Otolemur_garnettii_69_3   (Small-eared galago)   3
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   2
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   2
Bos_taurus_69_3.1   (Cattle)   1
Vicugna_pacos_69_1   (Alpaca)   3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Canis_familiaris_69_3.1   (Dog)   2
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   1
Pteropus_vampyrus_69_1   (Large flying fox)   2
Sorex_araneus_69_1   (European shrew)   2
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   2
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_69_5   (Platypus)   3
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Meleagris_gallopavo_69_2   (Turkey)   1
Gallus_gallus_69_2   (Chicken)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_69_2.0   (Green anole)   3
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   2
Gadus_morhua_69_1   (Atlantic cod)   2
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   2
Takifugu_rubripes_69_4   (Torafugu)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   2
Oryzias_latipes_69_1   (Japanese medaka)   2
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   3
Oreochromis_niloticus_69_1.0   (Nile tilapia)   3
Danio_rerio_69_9   (Zebrafish)   1
Drosophila_melanogaster_69_5   (Fruit fly)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2
Homo_sapiens__(NCBI_version)   (Human)   2
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Malus_x_domestica_(Duplicate)   (Apple)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Phoenix_dactylifera__(Early_draft)   (Date palm)   0
NCBI_plasmid_sequences_(Plasmids) 1
NCBI_2017_08_genome 1667
UniProt__viral_sequences_(Viral) 1
NCBI_viral_sequences_(Viral) 1
Protozoadb_2010_08_(Protozoadb) 2
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 82
Uniprot_2018_03_genome 6048

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