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Domain combinations for 50978,101898,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50978 - WD40 repeat-like
101898 - NHL repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Rattus_norvegicus_76_5.0   (Norway rat)   0
Mus_musculus_76_38   (House mouse)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Danio_rerio_76_9   (Zebrafish)   2
Crassostrea_gigas_22   (Pacific oyster)   0
Nasonia_vitripennis_   (Jewel wasp)   2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Drosophila_willistoni_1.3 0
Drosophila_suzukii 0
Drosophila_virilis_1.2 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Schistosoma_mansoni_ 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Sporisorium_reilianum_22 1
Ustilago_maydis_ 0
Rhodotorula_graminis_WP1_v1.0 1
Sporobolomyces_roseus_IAM_13481_ 1
Microbotryum_violaceum_22 1
Sphaerobolus_stellatus_v1.0 1
Piloderma_croceum_F_1598_v1.0 1
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Pisolithus_microcarpus_441_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1
Galerina_marginata_v1.0 1
Gloeophyllum_trabeumv1.0 1
Postia_placenta_ 2
Wolfiporia_cocos_MD-104_SS10__v1.0 1
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Didymella_exigua_CBS_183.55_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 0
Alternaria_brassicicola_ 0
Coccidioides_immitis_RS_ 0
Wickerhamomyces_anomalus 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1
Candida_glabrata_CBS138 0
Saccharomyces_paradoxus_MIT 1
Schizosaccharomyces_octosporus_yFS286_ 1
Allomyces_macrogynus_ATCC_38327_ 1
Selaginella_moellendorffii_ 1
Picea_abies   (Norway spruce)   1
Gossypium_raimondii_v221 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 1
Arabidopsis_thaliana_10   (Thale cress)   1
Medicago_truncatula_   (Barrel medic)   1
Cucumis_sativus_v122   (Cucumber)   5
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   1
Prunus_persica_v139   (Peach)   2
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   2
Aquilegia_coerulea_v195 15
Triticum_aestivum_22   (Bread wheat)   5
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   9
Oryza_barthii_22   (African wild rice)   2
Oryza_glumaepatula_22 2
Oryza_punctata_22 8
Oryza_nivara_22 2
Oryza_brachyantha_22   (Malo sina)   2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2
Panicum_virgatum_v202   (Switchgrass)   1
Setaria_italica_v164   (Foxtail millet)   3
Zea_mays_subsp._mays_   (Maize)   6
Zea_mays_v181   (Maize)   12
Sorghum_bicolor_   (Sorghum)   2
Musa_balbisiana   (Balbis banana)   1
Musa_acuminata_22   (Wild Malaysian banana)   1
Amborella_trichopoda_22 1
Physcomitrella_patens 1
Micromonas_sp._RCC299_ 0
Pythium_ultimum_v1.7-2 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_infestans_T30-4_ 0
Perkinsus_marinus_ATCC_50983_ 2
Guillardia_theta_CCMP2712_v1.0_ 0
Shewanella_sp._MR-4 0

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Strains
Genome     Number
Cryptococcus_neoformans_var._grubii_H99_ 1
Saccharomyces_cerevisiae_FostersB 1
Batrachochytrium_dendrobatidis_JEL423_ 0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1

Longest transcript per gene
Genome     Number
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   1
Rattus_norvegicus_69_3.4   (Norway rat)   0
Mus_musculus_69_38   (House mouse)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Gallus_gallus_69_2   (Chicken)   0
Danio_rerio_69_9   (Zebrafish)   1
Arabidopsis_thaliana_10   (Thale cress)   1

Others
Genome     Number
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
Malus_x_domestica_(Duplicate)   (Apple)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 3
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
Phoenix_dactylifera__(Early_draft)   (Date palm)   0
STRING_v9.0.5_(STRING) 18
NCBI_2017_08_genome 224
Uniprot_2018_03_genome 1848

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