SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 50978,50969,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50978 - WD40 repeat-like
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_76_3   (Small-eared galago)   0
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Ochotona_princeps_76   (American pika)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Bos_taurus_76_3.1   (Cattle)   2
Ovis_aries_76_3.1   (Sheep)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   0
Felis_catus_76_6.2   (Domestic cat)   0
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Pteropus_vampyrus_76_1   (Large flying fox)   2
Sorex_araneus_76_1   (European shrew)   0
Erinaceus_europaeus_76   (Western European hedgehog)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Ornithorhynchus_anatinus_76_5   (Platypus)   2
Saccoglossus_kowalevskii_v3.0 0
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Gallus_gallus_76_4   (Chicken)   0
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Latimeria_chalumnae_76_1   (Coelacanth)   0
Gadus_morhua_76_1   (Atlantic cod)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Poecilia_formosa_76   (Amazon molly)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   6
Ciona_intestinalis_76   (Vase tunicate)   0
Adineta_vaga 4
Lottia_gigantea_   (Owl limpet)   0
Capitella_sp._I_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Heliconius_melpomene_   (Postman butterfly)   2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 1
Drosophila_suzukii 0
Drosophila_yakuba_1.3 0
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Drosophila_mojavensis_1.3 0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   1
Acyrthosiphon_pisum_   (Pea aphid)   0
Daphnia_pulex_   (Common water flea)   0
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   1
Onchocerca_volvulus_22 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_elegans_76_235   (Roundworm)   0
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 1
Taenia_solium_   (Pork tapeworm)   1
Schistosoma_mansoni_ 1
Mnemiopsis_leidyi   (Sea walnut)   1
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Hydra_vulgaris 1
Amphimedon_queenslandica 1
Trichoplax_adhaerens_ 1
Proterospongia_sp._ATCC_50818_ 1
Conidiobolus_coronatus_NRRL28638_v1.0 0
Phycomyces_blakesleeanus_ 1
Rhizopus_oryzae_RA_99-880_ 1
Sporisorium_reilianum_22 1
Rhodotorula_graminis_WP1_v1.0 0
Piloderma_croceum_F_1598_v1.0 0
Coniophora_puteana 0
Paxillus_rubicundulus_Ve08.2h10_v1.0 0
Pisolithus_microcarpus_441_v1.0 0
Scleroderma_citrinum_Foug_A_v1.0 0
Coprinopsis_cinerea_okayama7_130_v3 0
Amanita_thiersii_Skay4041_v1.0 0
Galerina_marginata_v1.0 0
Laccaria_bicolor_S238N-H82_ 1
Agaricus_bisporus_var._bisporus_ 0
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Heterobasidion_annosum_ 0
Punctularia_strigosozonata_v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 1
Fomitiporia_mediterranea_v1.0 1
Wolfiporia_cocos_MD-104_SS10__v1.0 0
Fomitopsis_pinicolav1.0 0
Dichomitus_squalens 0
Daldinia_eschscholzii_EC12_v1.0 0
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 0
Sporotrichum_thermophile_ATCC_42464_ 0
Chaetomium_globosum_CBS_148.51_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Acremonium_alcalophilumv_1.0 1
Glomerella_graminicola_22 2
Fusarium_graminearum_ 1
Nectria_haematococca_mpVI_ 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1
Fusarium_verticillioides_7600_ 1
Trichoderma_asperellum_CBS_433.97_v1.0 0
Trichoderma_reesei_1.2 2
Trichoderma_virens_Gv29-8_ 0
Trichoderma_harzianum_CBS_226.95_v1.0 0
Amorphotheca_resinae_v1.0   (Creosote fungus)   0
Botrytis_cinerea_B05.10_ 0
Sclerotinia_sclerotiorum_ 1
Didymella_exigua_CBS_183.55_v1.0 0
Leptosphaeria_maculans_22 0
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Alternaria_brassicicola_ 1
Cochliobolus_lunatus_m118_v2.0 1
Pyrenophora_teres_f._teres_22 1
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 1
Dothistroma_septosporum 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Paracoccidioides_brasiliensis_Pb18_ 1
Ajellomyces_dermatitidis_SLH14081_ 1
Trichophyton_verrucosum_HKI_0517_ 1
Arthroderma_benhamiae_CBS_112371_ 1
Aspergillus_zonatus_v1.0 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1
Penicillium_chrysogenum_v1.0 1
Aspergillus_acidus_v1.0 1
Aspergillus_nidulans_FGSC_A4_ 1
Aspergillus_sydowii_v1.0 1
Aspergillus_versicolor_v1.0 1
Aspergillus_glaucus 1
Aspergillus_carbonarius_ITEM_5010_ 1
Aspergillus_tubingensis_v1.0 1
Aspergillus_wentii_v1.0 1
Aspergillus_niger_22 1
Aspergillus_niger_ATCC_1015_ 1
Aspergillus_flavus_NRRL3357_ 1
Aspergillus_clavatus_NRRL_1_ 1
Penicillium_marneffei_ATCC_18224_ 1
Pichia_membranifaciensv1.0 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 2
Candida_dubliniensis_CD36_ 1
Candida_tropicalis_MYA-3404_ 1
Candida_parapsilosis_ 0
Candida_albicans_SC5314 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 0
Pichia_stipitis_CBS_6054_ 1
Candida_guilliermondii_ATCC_6260_ 1
Debaromyces_hansenii 1
Wickerhamomyces_anomalus 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2
Candida_lusitaniae_ATCC_42720_ 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1
Vanderwaltozyma_polyspora_DSM_70294_ 1
Candida_glabrata_CBS138 1
Lachancea_kluyveri_ 1
Kluyveromyces_lactis 1
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_octosporus_yFS286_ 0
Schizosaccharomyces_japonicus_yFS275_ 0
Schizosaccharomyces_pombe   (Fission yeast)   1
Entamoeba_dispar_1.2 1
Entamoeba_histolytica_1 1
Pinus_taeda   (Loblolly pine)   2
Thellungiella_halophila_v173 0
Medicago_truncatula_   (Barrel medic)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   0
Actinidia_chinensis_Hongyang_ 0
Aquilegia_coerulea_v195 1
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 1
Oryza_nivara_22 1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Panicum_virgatum_v202   (Switchgrass)   1
Musa_acuminata_22   (Wild Malaysian banana)   0
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 0
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 1
Micromonas_pusilla_CCMP1545_v3.0 0
Porphyridium_purpureum_02_2012 1
Leishmania_mexicana_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Trypanosoma_vivax_ 1
Albugo_laibachii_22 0
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 1
Pythium_irregulare_DAOM_BR486_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_sojae_1.1 1
Phytophthora_infestans_T30-4_ 1
Phytophthora_capsici_ 1
Hyaloperonospora_arabidopsidis_22 2
Fragilariopsis_cylindrus 2
Tetrahymena_thermophila_SB210_1_ 0
Ichthyophthirius_multifiliis_strain_G5_ 1
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Babesia_bovis_T2Bo_ 0
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 0
Trichomonas_vaginalis_ 4
Emiliania_huxleyi_CCMP1516_ 0
Calditerrivibrio_nitroreducens_DSM_19672 0
Desulfovibrio_magneticus_RS-1 0
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 0
Mesorhizobium_loti_MAFF303099 0

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Cryptococcus_neoformans_var._grubii_H99_ 1
Cryptococcus_neoformans_B-3501A_ 1
Cryptococcus_neoformans_JEC21_ 1
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 1
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 1
Aspergillus_fumigatus_A1163_ 1
Candida_albicans_WO-1_ 1
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_CBS7960 0
Saccharomyces_cerevisiae_AWRI1631 0
Saccharomyces_cerevisiae_CLIB215 0
Schizosaccharomyces_pombe_972h-_ 1
Batrachochytrium_dendrobatidis_JEL423_ 0
Batrachochytrium_dendrobatidis_JAM81_ 0
Singulisphaera_acidiphila_DSM_18658 1
Desulfobacula_toluolica_Tol2 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_69_3   (Small-eared galago)   0
Rattus_norvegicus_69_3.4   (Norway rat)   0
Mus_musculus_69_38   (House mouse)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Ochotona_princeps_69   (American pika)   1
Tupaia_belangeri_69   (Northern tree shrew)   1
Bos_taurus_69_3.1   (Cattle)   2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   0
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Pteropus_vampyrus_69_1   (Large flying fox)   2
Sorex_araneus_69_1   (European shrew)   0
Erinaceus_europaeus_69   (Western European hedgehog)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Ornithorhynchus_anatinus_69_5   (Platypus)   2
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Latimeria_chalumnae_69_1   (Coelacanth)   0
Gadus_morhua_69_1   (Atlantic cod)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Danio_rerio_69_9   (Zebrafish)   1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_69   (Vase tunicate)   0
Drosophila_melanogaster_69_5   (Fruit fly)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
NCBI_2017_08_genome 368
Uniprot_2018_03_genome 3756
TargetDB__(Targets) 1
Protein_Data_Bank_(all_PDB_sequenc) 0
Core_Eukaryotic_Genes_458_(CEGMA) 0
Protozoadb_2010_08_(Protozoadb) 14
STRING_v9.0.5_(STRING) 46

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