SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 50998,47769,57850 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50998 - Quinoprotein alcohol dehydrogenase-like
47769 - SAM/Pointed domain
57850 - RING/U-box

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Ochotona_princeps_76   (American pika)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Bos_taurus_76_3.1   (Cattle)   1
Ovis_aries_76_3.1   (Sheep)   1
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   1
Sorex_araneus_76_1   (European shrew)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Gallus_gallus_76_4   (Chicken)   1
Anas_platyrhynchos_76_1.0   (Mallard)   1
Tetranychus_urticae_   (Two-spotted spider mite)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Ochotona_princeps_69   (American pika)   1
Tupaia_belangeri_69   (Northern tree shrew)   1
Bos_taurus_69_3.1   (Cattle)   1
Canis_familiaris_69_3.1   (Dog)   1
Sorex_araneus_69_1   (European shrew)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   3
Uniprot_2018_03_genome 162
NCBI_2017_08_genome 112
STRING_v9.0.5_(STRING) 4

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