SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 52047 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52047 - RNI-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   90
Pan_troglodytes_76_2.1.4   (Chimpanzee)   12
Gorilla_gorilla_76_3.1   (Western gorilla)   18
Pongo_abelii_76_2   (Sumatran orangutan)   15
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   14
Papio_anubis_76   (Olive baboon)   11
Macaca_mulatta_76_1   (Rhesus monkey)   33
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   35
Otolemur_garnettii_76_3   (Small-eared galago)   8
Microcebus_murinus_76_1   (Gray mouse lemur)   16
Rattus_norvegicus_76_5.0   (Norway rat)   15
Mus_musculus_76_38   (House mouse)   35
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   17
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   10
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   17
Cavia_porcellus_76_3   (Domestic guinea pig)   11
Oryctolagus_cuniculus_76_2   (Rabbit)   10
Ochotona_princeps_76   (American pika)   14
Tupaia_belangeri_76   (Northern tree shrew)   15
Sus_scrofa_76_10.2   (Pig)   14
Bos_taurus_76_3.1   (Cattle)   14
Ovis_aries_76_3.1   (Sheep)   11
Vicugna_pacos_76_1   (Alpaca)   13
Tursiops_truncatus_76_1   (Bottlenose dolphin)   9
Mustela_putorius_furo_76_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_76_1   (Giant panda)   13
Canis_familiaris_76_3.1   (Dog)   16
Felis_catus_76_6.2   (Domestic cat)   11
Equus_caballus_76_2   (Horse)   12
Myotis_lucifugus_76_2.0   (Little brown bat)   17
Pteropus_vampyrus_76_1   (Large flying fox)   11
Sorex_araneus_76_1   (European shrew)   10
Erinaceus_europaeus_76   (Western European hedgehog)   14
Procavia_capensis_76_1   (Cape rock hyrax)   16
Loxodonta_africana_76_3   (African savanna elephant)   11
Echinops_telfairi_76   (Small Madagascar hedgehog)   18
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   11
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   9
Macropus_eugenii_76_1.0   (Tammar wallaby)   10
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   10
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   11
Ornithorhynchus_anatinus_76_5   (Platypus)   22
Saccoglossus_kowalevskii_v3.0 36
Petromyzon_marinus_76_7.0   (Sea lamprey)   15
Meleagris_gallopavo_76_2   (Turkey)   12
Gallus_gallus_76_4   (Chicken)   9
Anas_platyrhynchos_76_1.0   (Mallard)   13
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   13
Ficedula_albicollis_76_1.0   (Collared flycatcher)   9
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   18
Anolis_carolinensis_76_2.0   (Green anole)   11
Xenopus_laevis_   (African clawed frog)   4
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   13
Latimeria_chalumnae_76_1   (Coelacanth)   16
Lepisosteus_oculatus_76   (Spotted gar)   17
Gadus_morhua_76_1   (Atlantic cod)   18
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   30
Takifugu_rubripes_76_4   (Torafugu)   59
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   23
Oryzias_latipes_76_1   (Japanese medaka)   43
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   16
Poecilia_formosa_76   (Amazon molly)   12
Oreochromis_niloticus_76_1.0   (Nile tilapia)   25
Astyanax_mexicanus_76   (Mexican tetra)   53
Danio_rerio_76_9   (Zebrafish)   34
Oikopleura_dioica 7
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   12
Ciona_intestinalis_76   (Vase tunicate)   21
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   42
Adineta_vaga 231
Octopus_bimaculoides_280 19
Crassostrea_gigas_22   (Pacific oyster)   14
Lottia_gigantea_   (Owl limpet)   27
Helobdella_robusta_ 17
Capitella_sp._I_ 45
Danaus_plexippus_OGS1.0   (Monarch butterfly)   11
Heliconius_melpomene_   (Postman butterfly)   8
Bombyx_mori_   (Domestic silkworm)   18
Nasonia_vitripennis_   (Jewel wasp)   3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   23
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   8
Linepithema_humile_v1.1   (Argentine ant)   6
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   12
Solenopsis_invicta_v.2.2.3   (Red fire ant)   9
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   8
Atta_cephalotes_v1.1 10
Camponotus_floridanus_v3.3   (Florida carpenter ant)   4
Lucilia_cuprina   (Australian sheep blowfly)   11
Drosophila_grimshawi_1.3 15
Drosophila_willistoni_1.3 8
Drosophila_pseudoobscura_2.13 13
Drosophila_persimilis_1.3 13
Drosophila_suzukii 6
Drosophila_yakuba_1.3 17
Drosophila_simulans_1.3 10
Drosophila_sechellia_1.3 12
Drosophila_melanogaster_76_5   (Fruit fly)   9
Drosophila_erecta_1.3 13
Drosophila_ananassae_1.3 15
Drosophila_virilis_1.2 13
Drosophila_mojavensis_1.3 10
Megaselia_scalaris_22 11
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   13
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   19
Anopheles_darlingi_22   (American malaria mosquito)   10
Anopheles_gambiae_49_3j   (African malaria mosquito)   12
Tribolium_castaneum_3.0   (Red flour beetle)   5
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5
Acyrthosiphon_pisum_   (Pea aphid)   0
Rhodnius_prolixus_22 5
Daphnia_pulex_   (Common water flea)   31
Strigamia_maritima_22 17
Sarcoptes_scabiei 9
Tetranychus_urticae_   (Two-spotted spider mite)   140
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   27
Pristionchus_pacificus_ 9
Meloidogyne_incognita_   (Southern root-knot nematode)   8
Meloidogyne_hapla_ 3
Onchocerca_volvulus_22 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   8
Caenorhabditis_japonica_ 8
Caenorhabditis_brenneri_ 11
Caenorhabditis_remanei_ 10
Caenorhabditis_elegans_76_235   (Roundworm)   9
Caenorhabditis_briggsae_2 5
Trichinella_spiralis_22 6
Hymenolepis_microstoma_ 3
Echinococcus_multilocularis_ 5
Echinococcus_granulosus_ 4
Taenia_solium_   (Pork tapeworm)   7
Schistosoma_mansoni_ 6
Mnemiopsis_leidyi   (Sea walnut)   12
Thelohanellus_kitauei 5
Acropora_digitifera_v1.0 34
Nematostella_vectensis_1.0   (Starlet sea anemone)   66
Hydra_vulgaris 10
Amphimedon_queenslandica 84
Trichoplax_adhaerens_ 9
Proterospongia_sp._ATCC_50818_ 30
Monosiga_brevicollis_ 5
Sphaeroforma_arctica_JP610_ 11
Capsaspora_owczarzaki_ATCC_30864_ 27
Conidiobolus_coronatus_NRRL28638_v1.0 166
Mortierella_verticillata_NRRL_6337_ 97
Phycomyces_blakesleeanus_ 11
Rhizopus_oryzae_RA_99-880_ 16
Mucor_circinelloides_ 17
Rhizomucor_miehei_CAU432_ 13
Malassezia_globosa_CBS_7966_ 6
Sporisorium_reilianum_22 1
Ustilago_maydis_ 0
Mixia_osmundae_IAM_14324_v1.0 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 9
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 8
Melampsora_laricis-populina_ 36
Rhodotorula_graminis_WP1_v1.0 14
Sporobolomyces_roseus_IAM_13481_ 7
Microbotryum_violaceum_22 4
Wallemia_sebi_v1.0 3
Sphaerobolus_stellatus_v1.0 111
Piloderma_croceum_F_1598_v1.0 43
Serpula_lacrymans_var._lacrymans_S7.9_ 9
Coniophora_puteana 25
Hydnomerulius_pinastri_v2.0 13
Paxillus_rubicundulus_Ve08.2h10_v1.0 17
Pisolithus_microcarpus_441_v1.0 7
Pisolithus_tinctorius_Marx_270_v1.0 21
Scleroderma_citrinum_Foug_A_v1.0 16
Coprinopsis_cinerea_okayama7_130_v3 21
Pleurotus_ostreatus_   (Oyster mushroom)   40
Amanita_thiersii_Skay4041_v1.0 18
Amanita_muscaria_Koide_v1.0   (Fly agaric)   44
Galerina_marginata_v1.0 44
Hebeloma_cylindrosporum_h7_v2.0 61
Laccaria_bicolor_S238N-H82_ 42
Agaricus_bisporus_var._bisporus_ 21
Schizophyllum_commune_ 30
Stereum_hirsutum_FP-91666_SS1__v1.0 33
Heterobasidion_annosum_ 15
Gloeophyllum_trabeumv1.0 33
Punctularia_strigosozonata_v1.0 29
Sebacina_vermifera_MAFF_305830_v1.0 40
Fomitiporia_mediterranea_v1.0 17
Tulasnella_calospora_AL13/4D_v1.0 71
Postia_placenta_ 23
Wolfiporia_cocos_MD-104_SS10__v1.0 18
Fomitopsis_pinicolav1.0 37
Fomitopsis_pinicola_FP-58527_SS1_v3.0 38
Phanerochaete_chrysosporium_RP-78_2.1 20
Dichomitus_squalens 19
Trametes_versicolor_v1.0 49
Tremella_mesenterica_   (Witches' butter)   1
Daldinia_eschscholzii_EC12_v1.0 2
Apiospora_montagnei_NRRL_25634_v1.0 1
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 1
Podospora_anserina_ 2
Sporotrichum_thermophile_ATCC_42464_ 2
Thielavia_terrestris_NRRL_8126_ 0
Chaetomium_globosum_CBS_148.51_ 0
Neurospora_tetrasperma_ 2
Neurospora_discreta_FGSC_8579_ 0
Neurospora_crassa_OR74A_ 0
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Verticillium_albo-atrum_VaMs.102_ 0
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 0
Glomerella_graminicola_22 1
Fusarium_graminearum_ 2
Nectria_haematococca_mpVI_ 5
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3
Fusarium_verticillioides_7600_ 4
Trichoderma_asperellum_CBS_433.97_v1.0 2
Trichoderma_atroviride_ 0
Trichoderma_citrinoviride_v1.0 2
Trichoderma_reesei_1.2 1
Trichoderma_virens_Gv29-8_ 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   3
Botrytis_cinerea_B05.10_ 2
Sclerotinia_sclerotiorum_ 2
Blumeria_graminis_22 1
Didymella_exigua_CBS_183.55_v1.0 2
Leptosphaeria_maculans_22 1
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2
Alternaria_brassicicola_ 4
Cochliobolus_lunatus_m118_v2.0 2
Pyrenophora_teres_f._teres_22 3
Pyrenophora_tritici-repentis_ 4
Stagonospora_nodorum_ 8
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 3
Dothistroma_septosporum 1
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 5
Paracoccidioides_brasiliensis_Pb18_ 1
Coccidioides_posadasii_RMSCC_3488_ 0
Coccidioides_immitis_RS_ 0
Ajellomyces_dermatitidis_SLH14081_ 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Microsporum_canis_CBS_113480_ 2
Trichophyton_equinum_CBS_127.97_ 0
Trichophyton_verrucosum_HKI_0517_ 1
Arthroderma_benhamiae_CBS_112371_ 2
Trichophyton_tonsurans_CBS_112818_ 1
Trichophyton_rubrum_CBS_118892_ 1
Uncinocarpus_reesii_1704_ 4
Aspergillus_zonatus_v1.0 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 4
Penicillium_chrysogenum_v1.0 3
Aspergillus_acidus_v1.0 4
Aspergillus_fumigatus_Af293 3
Aspergillus_brasiliensis_v1.0 3
Aspergillus_nidulans_FGSC_A4_ 6
Aspergillus_sydowii_v1.0 3
Aspergillus_versicolor_v1.0 2
Aspergillus_glaucus 4
Aspergillus_carbonarius_ITEM_5010_ 4
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_terreus_NIH2624_ 2
Aspergillus_tubingensis_v1.0 2
Aspergillus_wentii_v1.0 9
Aspergillus_oryzae_RIB40_ 8
Aspergillus_niger_22 3
Aspergillus_niger_ATCC_1015_ 2
Aspergillus_flavus_NRRL3357_ 5
Aspergillus_clavatus_NRRL_1_ 1
Penicillium_marneffei_ATCC_18224_ 1
Tuber_melanosporum_Mel28_22 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   2
Hansenula_polymorpha_v2.0 2
Dekkera_bruxellensis_CBS_2499_v2.0 3
Pichia_membranifaciensv1.0 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3
Candida_dubliniensis_CD36_ 4
Candida_tropicalis_MYA-3404_ 8
Candida_parapsilosis_ 3
Candida_albicans_SC5314 4
Lodderomyces_elongisporus_NRRL_YB-4239_ 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 4
Pichia_stipitis_CBS_6054_ 0
Candida_guilliermondii_ATCC_6260_ 3
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3
Debaromyces_hansenii 2
Wickerhamomyces_anomalus 8
Pichia_pastoris_GS115_ 0
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2
Yarrowia_lipolytica_CLIB122 3
Candida_lusitaniae_ATCC_42720_ 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1
Vanderwaltozyma_polyspora_DSM_70294_ 1
Candida_glabrata_CBS138 1
Kluyveromyces_thermotolerans_CBS_6340 2
Lachancea_kluyveri_ 1
Kluyveromyces_waltii 2
Ashbya_gossypii_ATCC_10895_ 1
Zygosaccharomyces_rouxii_ 1
Saccharomyces_mikatae_MIT 1
Saccharomyces_paradoxus_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Saccharomyces_bayanus_MIT 2
Kluyveromyces_lactis 2
Schizosaccharomyces_cryophilus_OY26_22 3
Schizosaccharomyces_octosporus_yFS286_ 2
Schizosaccharomyces_japonicus_yFS275_ 2
Schizosaccharomyces_pombe   (Fission yeast)   2
Catenaria_anguillulae_PL171_v1.0 7
Allomyces_macrogynus_ATCC_38327_ 51
Spizellomyces_punctatus_DAOM_BR117_ 7
Dictyostelium_discoideum 7
Dictyostelium_purpureum_ 13
Entamoeba_dispar_1.2 2
Entamoeba_invadens_1.2 6
Entamoeba_histolytica_1 1
Selaginella_moellendorffii_ 24
Pinus_taeda   (Loblolly pine)   66
Picea_abies   (Norway spruce)   62
Eucalyptus_grandis_v201   (Rose gum)   46
Theobroma_cacao_B97-61/B2_v1   (Cacao)   44
Gossypium_raimondii_v221 73
Citrus_clementina_v165 71
Citrus_sinensis_v154   (Sweet orange)   105
Thellungiella_halophila_v173 44
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   46
Capsella_rubella_v183 26
Arabidopsis_lyrata_   (Lyrate rockcress)   57
Arabidopsis_thaliana_10   (Thale cress)   35
Carica_papaya_   (Papaya)   18
Medicago_truncatula_   (Barrel medic)   209
Phaseolus_vulgaris_v186   (French bean)   21
Glycine_max_v109   (Soybean)   43
Cucumis_sativus_v122   (Cucumber)   18
Fragaria_vesca_   (Wild strawberry)   86
Malus_domestica_v196   (Apple)   80
Prunus_persica_v139   (Peach)   34
Linum_usitatissimum_v200   (Flax)   59
Manihot_esculenta_v147   (Cassava)   34
Populus_trichocarpa_v156   (Black cottonwood)   63
Vitis_vinifera_   (Wine grape)   41
Mimulus_guttatus_v140   (Spotted monkey flower)   46
Solanum_lycopersicum_v.2.3   (Tomato)   39
Solanum_tuberosum_   (Potato)   151
Actinidia_chinensis_Hongyang_ 34
Aquilegia_coerulea_v195 72
Triticum_urartu_22 81
Triticum_aestivum_22   (Bread wheat)   234
Aegilops_tauschii_22 100
Brachypodium_distachyon_   (Stiff brome)   50
Oryza_barthii_22   (African wild rice)   53
Oryza_meridionalis_22 42
Oryza_glumaepatula_22 49
Oryza_glaberrima   (African rice)   39
Oryza_punctata_22 51
Oryza_nivara_22 39
Oryza_brachyantha_22   (Malo sina)   36
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   69
Oryza_sativa_v193   (Rice)   68
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   28
Panicum_virgatum_v202   (Switchgrass)   142
Setaria_italica_v164   (Foxtail millet)   35
Zea_mays_subsp._mays_   (Maize)   36
Zea_mays_v181   (Maize)   47
Sorghum_bicolor_   (Sorghum)   56
Musa_balbisiana   (Balbis banana)   24
Musa_acuminata_22   (Wild Malaysian banana)   26
Amborella_trichopoda_22 19
Physcomitrella_patens 17
Coccomyxa_subellipsoidea_sp._C-169_v2 12
Asterochloris_sp._Cgr/DA1pho_v1.0 4
Chlorella_variabilis_sp._NC64A_ 11
Chlorella_vulgaris_ 17
Volvox_carteri_f._nagariensis_ 14
Volvox_carteri_v199 10
Chlamydomonas_reinhardtii_4.0 11
Ostreococcus_sp._RCC809_ 6
Ostreococcus_lucimarinus_CCE9901_ 5
Ostreococcus_tauri_ 5
Bathycoccus_prasinos_ 1
Micromonas_sp._RCC299_ 6
Micromonas_pusilla_CCMP1545_v3.0 10
Cyanidioschyzon_merolae_strain_10D_22 2
Cyanidioschyzon_merolae 2
Porphyridium_purpureum_02_2012 5
Thecamonas_trahens_ATCC_50062_ 16
Bigelowiella_natans_CCMP2755_22 31
Giardia_lamblia_2.3 0
Cyanophora_paradoxa_ 130
Leishmania_mexicana_2.4 9
Leishmania_major_strain_Friedlin_ 12
Leishmania_infantum_JPCM5_2.4 10
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 13
Trypanosoma_vivax_ 16
Trypanosoma_cruzi_strain_CL_Brener 18
Trypanosoma_congolense_2.4 28
Trypanosoma_brucei_gambiense_v4.1 22
Trypanosoma_brucei_TREU927_v4.1 19
Ectocarpus_siliculosus 14
Aureococcus_anophagefferens_ 21
Albugo_laibachii_22 5
Pythium_iwayamai_DAOM_BR242034_22 27
Pythium_arrhenomanes_ATCC_12531_22 21
Pythium_ultimum_v1.7-2 14
Pythium_aphanidermatum_DAOM_BR444_22 16
Pythium_irregulare_DAOM_BR486_22 13
Pythium_vexans_DAOM_BR484_22 12
Phytophthora_ramorum_1.1   (Sudden oak death agent)   7
Phytophthora_sojae_1.1 9
Phytophthora_infestans_T30-4_ 14
Phytophthora_capsici_ 19
Hyaloperonospora_arabidopsidis_22 12
Phaeodactylum_tricornutumCCAP_1055/1 15
Fragilariopsis_cylindrus 63
Thalassiosira_pseudonana_CCMP1335 19
Perkinsus_marinus_ATCC_50983_ 17
Paramecium_tetraurelia_ 21
Tetrahymena_thermophila_SB210_1_ 427
Ichthyophthirius_multifiliis_strain_G5_ 14
Cryptosporidium_hominis 0
Cryptosporidium_muris 0
Cryptosporidium_parvum_Iowa_II 0
Neospora_caninum 2
Toxoplasma_gondii_VEG 4
Toxoplasma_gondii_ME49 2
Toxoplasma_gondii_GT1 2
Babesia_bovis_T2Bo_ 2
Theileria_parva__ 1
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 2
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 3
Plasmodium_yoelii_ssp._yoelii_1_ 4
Plasmodium_chabaudi_ 3
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 71
Naegleria_gruberi_ 183
Trichomonas_vaginalis_ 17
Guillardia_theta_CCMP2712_v1.0_ 69
Emiliania_huxleyi_CCMP1516_ 156
Leptolyngbya_sp._PCC_7376 0
Acaryochloris_marina_MBIC11017 0
Synechococcus_sp._CC9311 0
Gloeocapsa_sp._PCC_7428 0
Halothece_sp._PCC_7418 0
Microcystis_aeruginosa_NIES-843 0
Rivularia_sp._PCC_7116 1
'Nostoc_azollae'_0708 0
Nostoc_sp._PCC_7107 0
Nostoc_sp._PCC_7524 0
Ureaplasma_urealyticum_serovar_10_str._ATCC_33699 0
Mycoplasma_crocodyli_MP145 0
Mycoplasma_fermentans_M64 0
Catenulispora_acidiphila_DSM_44928 3
Frankia_symbiont_of_Datisca_glomerata 0
Thermobifida_fusca_YX 0
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 4
Streptosporangium_roseum_DSM_43021 4
Kitasatospora_setae_KM-6054 1
Streptomyces_sp._PAMC26508 2
Streptomyces_flavogriseus_ATCC_33331 2
Streptomyces_sp._SirexAA-E 0
Streptomyces_griseus_subsp._griseus_NBRC_13350 2
Streptomyces_bingchenggensis_BCW-1 0
Streptomyces_violaceusniger_Tu_4113 2
Streptomyces_avermitilis_MA-4680 0
Streptomyces_scabiei_87.22 0
Actinosynnema_mirum_DSM_43827 1
Pseudonocardia_dioxanivorans_CB1190 0
Amycolatopsis_mediterranei_U32 0
Actinoplanes_sp._SE50/110 3
Actinoplanes_missouriensis_431 1
Corynebacterium_glutamicum_R 0
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 0
Arthrobacter_phenanthrenivorans_Sphe3 0
Anaerolinea_thermophila_UNI-1 1
Herpetosiphon_aurantiacus_DSM_785 3
Deinococcus_maricopensis_DSM_21211 2
Natranaerobius_thermophilus_JW/NM-WN-LF 1
Clostridium_clariflavum_DSM_19732 1
Clostridium_thermocellum_ATCC_27405 0
butyrate-producing_bacterium_SS3/4 0
Syntrophobotulus_glycolicus_DSM_8271 0
Desulfotomaculum_reducens_MI-1 0
Clostridium_difficile_630 0
Clostridium_phytofermentans_ISDg 0
Roseburia_intestinalis 0
Alkaliphilus_metalliredigens_QYMF 0
Clostridium_novyi_NT 0
Clostridium_beijerinckii_NCIMB_8052 0
Clostridium_tetani_E88 1
Clostridium_botulinum_A_str._ATCC_3502 0
Clostridium_acetobutylicum_ATCC_824 0
Caldicellulosiruptor_lactoaceticus_6A 0
Caldicellulosiruptor_kristjanssonii_177R1B 0
Enterococcus_hirae_ATCC_9790 1
Lactobacillus_amylovorus_GRL1118 0
Lactobacillus_buchneri_NRRL_B-30929 0
Lactobacillus_buchneri 0
Lactobacillus_acidophilus_30SC 0
Lactococcus_garvieae_ATCC_49156 0
Streptococcus_equi_subsp._equi_4047 0
Streptococcus_mutans_NN2025 0
Streptococcus_oralis_Uo5 0
Paenibacillus_sp._JDR-2 1
Paenibacillus_terrae_HPL-003 1
Paenibacillus_mucilaginosus_3016 1
Paenibacillus_polymyxa_M1 1
Listeria_welshimeri_serovar_6b_str._SLCC5334 0
Listeria_innocua_Clip11262 0
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 0
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 0
Listeria_ivanovii_subsp._ivanovii_PAM_55 0
Lysinibacillus_sphaericus_C3-41 0
Bacillus_sp._JS 0
Bacillus_pumilus_SAFR-032 1
Melioribacter_roseus_P3M 0
Chloroherpeton_thalassium_ATCC_35110 0
Haliscomenobacter_hydrossis_DSM_1100 2
Saprospira_grandis_str._Lewin 3
Niastella_koreensis_GR20-10 2
Flexibacter_litoralis_DSM_6794 3
Candidatus_Amoebophilus_asiaticus_5a2 4
Cyclobacterium_marinum_DSM_745 1
Marivirga_tractuosa_DSM_4126 0
Fibrella_aestuarina 0
Leadbetterella_byssophila_DSM_17132 1
Dyadobacter_fermentans_DSM_18053 0
Spirosoma_linguale_DSM_74 0
Runella_slithyformis_DSM_19594 0
Parabacteroides_distasonis_ATCC_8503 0
Prevotella_intermedia_17 0
Porphyromonas_asaccharolytica_DSM_20707 0
Bacteroides_salanitronis_DSM_18170 0
Bacteroides_thetaiotaomicron_VPI-5482 0
Bacteroides_fragilis_YCH46 0
Solitalea_canadensis_DSM_3403 0
Pedobacter_heparinus_DSM_2366 0
Fluviicola_taffensis_DSM_16823 0
Owenweeksia_hongkongensis_DSM_17368 1
Zunongwangia_profunda_SM-A87 1
Gramella_forsetii_KT0803 1
Maribacter_sp._HTCC2170 0
Robiginitalea_biformata_HTCC2501 0
Zobellia_galactanivorans 0
Cellulophaga_algicola_DSM_14237 0
Cellulophaga_lytica_DSM_7489 0
Flavobacteriaceae_bacterium_3519-10 1
Polaribacter_sp._MED152 0
Capnocytophaga_canimorsus_Cc5 1
Capnocytophaga_ochracea_DSM_7271 0
Flavobacterium_indicum_GPTSA100-9 1
Flavobacterium_branchiophilum_FL-15 0
Flavobacterium_johnsoniae_UW101 0
Waddlia_chondrophila_WSU_86-1044 0
Candidatus_Protochlamydia_amoebophila_UWE25 10
Parachlamydia_acanthamoebae_UV-7 0
Simkania_negevensis_Z 1
Chlamydophila_pecorum_E58 0
Chlamydophila_caviae_GPIC 0
Chlamydophila_felis_Fe/C-56 0
Chlamydophila_abortus_S26/3 0
Chlamydia_psittaci_01DC11 0
Isosphaera_pallida_ATCC_43644 5
Planctomyces_brasiliensis_DSM_5305 5
Planctomyces_limnophilus_DSM_3776 1
Rhodopirellula_baltica_SH_1 4
Pirellula_staleyi_DSM_6068 4
Coraliomargarita_akajimensis_DSM_45221 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 0
Leptospira_interrogans_serovar_Lai_str._IPAV 4
Treponema_primitia_ZAS-2 0
Treponema_brennaborense_DSM_12168 2
Treponema_denticola_ATCC_35405 1
Calditerrivibrio_nitroreducens_DSM_19672 0
Thermotoga_lettingae_TMO 0
Caldisericum_exile_AZM16c01 0
Candidatus_Solibacter_usitatus_Ellin6076 1
Sebaldella_termitidis_ATCC_33386 1
Ilyobacter_polytropus_DSM_2926 1
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 1
Bacteriovorax_marinus_SJ 0
Campylobacter_jejuni_subsp._doylei_269.97 0
Campylobacter_sp._03-427 0
Campylobacter_fetus_subsp._fetus_82-40 0
uncultured_Sulfuricurvum_sp._RIFRC-1 0
Helicobacter_cetorum_MIT_00-7128 0
Helicobacter_felis_ATCC_49179 0
Helicobacter_acinonychis_str._Sheeba 0
Nitratiruptor_sp._SB155-2 0
Desulfotalea_psychrophila_LSv54 0
Desulfobacterium_autotrophicum_HRM2 0
Desulfovibrio_salexigens_DSM_2638 0
Geobacter_sp._M21 0
Geobacter_uraniireducens_Rf4 0
Geobacter_lovleyi_SZ 0
Geobacter_bemidjiensis_Bem 0
Geobacter_sulfurreducens_KN400 0
Geobacter_metallireducens_GS-15 0
Pelobacter_propionicus_DSM_2379 0
Haliangium_ochraceum_DSM_14365 0
Sorangium_cellulosum_'So_ce_56' 2
Stigmatella_aurantiaca_DW4/3-1 0
Corallococcus_coralloides_DSM_2259 0
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 0
Azoarcus_sp._KH32C 0
Methylibium_petroleiphilum_PM1 0
Burkholderia_rhizoxinica_HKI_454 0
Cupriavidus_taiwanensis_LMG_19424 0
Ralstonia_eutropha_H16 0
Ralstonia_solanacearum_CFBP2957 0
Burkholderia_gladioli_BSR3 1
Acidovorax_citrulli_AAC00-1 0
Acidovorax_avenae_subsp._avenae_ATCC_19860 0
Achromobacter_xylosoxidans 1
Methylovorus_sp._MP688 0
Erythrobacter_litoralis_HTCC2594 0
Novosphingobium_aromaticivorans_DSM_12444 0
Candidatus_Puniceispirillum_marinum_IMCC1322 1
alpha_proteobacterium_HIMB5 0
Wolbachia_endosymbiont_of_Culex_quinquefasciatus_Pel 2
Ehrlichia_ruminantium_str._Gardel 0
Orientia_tsutsugamushi_str._Boryong 0
Rickettsia_bellii_OSU_85-389 6
Rickettsia_philipii_str._364D 1
Rickettsia_heilongjiangensis_054 1
Rickettsia_peacockii_str._Rustic 1
Rickettsia_felis_URRWXCal2 0
Rickettsia_parkeri_str._Portsmouth 2
Rickettsia_massiliae_MTU5 0
Rickettsia_japonica_YH 0
Rickettsia_africae_ESF-5 1
Rickettsia_rhipicephali_str._3-7-female6-CWPP 1
Rickettsia_montanensis_str._OSU_85-930 3
Candidatus_Rickettsia_amblyommii_str._GAT-30V 4
Rickettsia_australis_str._Cutlack 1
Rickettsia_akari_str._Hartford 1
Rickettsia_rickettsii_str._'Sheila_Smith' 1
Rickettsia_conorii_str._Malish_7 2
Bradyrhizobium_japonicum_USDA_110 0
Bartonella_tribocorum_CIP_105476 0
Saccharophagus_degradans_2-40 0
Gallibacterium_anatis_UMN179 1
Aeromonas_salmonicida_subsp._salmonicida_A449 0
Vibrio_furnissii_NCTC_11218 1
Ferrimonas_balearica_DSM_9799 0
Shewanella_pealeana_ATCC_700345 0
Shewanella_baltica_OS185 0
Shewanella_violacea_DSS12 0
Pseudoalteromonas_atlantica_T6c 0
Glaciecola_sp._4H-3-7+YE-5 0
Marinomonas_mediterranea_MMB-1 0
Coxiella_burnetii_Dugway_5J108-111 0
Legionella_longbeachae_NSW150 3
Legionella_pneumophila_str._Corby 3
Proteus_mirabilis_HI4320 0
Dickeya_dadantii_Ech703 0
Dickeya_zeae_Ech1591 0
Pantoea_vagans_C9-1 1
Erwinia_sp._Ejp617 0
Erwinia_pyrifoliae_Ep1/96 0
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 0
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1
Escherichia_fergusonii_ATCC_35469 1
Pseudomonas_sp._TKP 0
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 0
Pseudomonas_syringae_pv._tomato_str._DC3000 0
Pseudomonas_protegens_Pf-5 0
Pseudomonas_sp._VLB120 0
Psychrobacter_sp._PRwf-1 1
Psychrobacter_cryohalolentis_K5 0
Acinetobacter_calcoaceticus_PHEA-2 0
Thioalkalimicrobium_cyclicum_ALM1 0
Francisella_novicida_U112 0
Acidianus_hospitalis_W1 0
Sulfolobus_islandicus_Y.N.15.51 0
Methanococcoides_burtonii_DSM_6242 0
Pyrococcus_furiosus_COM1 0
Methanothermobacter_marburgensis_str._Marburg 0
Methanobrevibacter_ruminantium_M1 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   22
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   9
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   12
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   9
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   9
Cryptococcus_neoformans_var._grubii_H99_ 0
Cryptococcus_neoformans_B-3501A_ 0
Cryptococcus_neoformans_JEC21_ 0
Paracoccidioides_brasiliensis_Pb01_ 0
Paracoccidioides_brasiliensis_Pb03_ 0
Coccidioides_posadasii_str._Silveira_ 0
Coccidioides_immitis_RMSCC_3703_ 0
Coccidioides_immitis_RMSCC_2394_ 0
Coccidioides_immitis_H538.4_ 5
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 0
Histoplasma_capsulatum_G186AR 1
Aspergillus_fumigatus_A1163_ 3
Candida_albicans_WO-1_ 6
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_FL100 0
Saccharomyces_cerevisiae_CLIB324 2
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 1
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_FostersB 3
Saccharomyces_cerevisiae_FostersO 2
Saccharomyces_cerevisiae_VL3 3
Saccharomyces_cerevisiae_Vin13 3
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_AWRI796 3
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_Y10 0
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 1
Saccharomyces_cerevisiae_RM11-1a 1
Saccharomyces_cerevisiae_RM11-1a_ 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Schizosaccharomyces_pombe_972h-_ 2
Batrachochytrium_dendrobatidis_JEL423_ 6
Batrachochytrium_dendrobatidis_JAM81_ 6
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   21
Hordeum_vulgare_22   (Domesticated barley)   147
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   60
Trypanosoma_brucei_Lister_427_v4.1 17
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 2
Plasmodium_falciparum_Dd2_ 0
Chamaesiphon_minutus_PCC_6605 2
Prochlorococcus_marinus_str._MIT_9312 0
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 1
Arthrospira_platensis_NIES-39 0
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7424 0
Calothrix_parietina_Calothrix_sp._PCC_6303 0
Cylindrospermum_stagnale_PCC_7417 1
Candidatus_Mycoplasma_haemolamae_str._Purdue 0
Mycoplasma_fermentans_JER 0
Mycoplasma_fermentans_PG18 0
Mycoplasma_hyopneumoniae_7448 0
Nocardiopsis_alba_ATCC_BAA-2165 2
Streptomyces_rapamycinicus_NRRL_5491 0
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_venezuelae_ATCC_10712 1
Streptomyces_collinus_Tu_365 1
Saccharothrix_espanaensis_DSM_44229 1
Amycolatopsis_mediterranei_RB 0
Amycolatopsis_mediterranei_S699 0
Amycolatopsis_mediterranei_S699 0
Propionibacterium_acnes_ATCC_11828 0
Actinoplanes_friuliensis_DSM_7358 3
Nocardia_brasiliensis_ATCC_700358 0
Corynebacterium_glutamicum_SCgG2 0
Corynebacterium_glutamicum_SCgG1 0
Clostridium_thermocellum_DSM_1313 0
Faecalibacterium_prausnitzii_L2-6 0
Clostridium_difficile_BI1 0
Clostridium_difficile_R20291 0
Clostridium_difficile_CD196 0
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 0
Roseburia_intestinalis_XB6B4 0
Clostridium_autoethanogenum_DSM_10061 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 0
Clostridium_tetani_genome_12124569 1
Clostridium_pasteurianum_BC1 0
Clostridium_botulinum_BKT015925 1
Clostridium_botulinum_F_str._230613 0
Clostridium_botulinum_F_str._Langeland 0
Clostridium_botulinum_B1_str._Okra 0
Clostridium_botulinum_Ba4_str._657 0
Clostridium_botulinum_A3_str._Loch_Maree 0
Clostridium_botulinum_A_str._Hall 0
Clostridium_botulinum_A_str._ATCC_19397 0
Clostridium_acetobutylicum_DSM_1731 0
Clostridium_acetobutylicum_EA_2018 0
Enterococcus_mundtii_QU_25 0
Enterococcus_faecalis_V583 0
Lactobacillus_plantarum_16 0
Lactobacillus_plantarum_ZJ316 0
Lactobacillus_plantarum_subsp._plantarum_P-8 0
Lactobacillus_plantarum_WCFS1 0
Lactobacillus_acidophilus_La-14 0
Lactobacillus_acidophilus_NCFM 0
Lactococcus_garvieae_Lg2 0
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 0
Lactococcus_lactis_subsp._lactis_IO-1 0
Lactococcus_lactis_subsp._lactis_CV56 0
Lactococcus_lactis_subsp._lactis_Il1403 0
Lactococcus_lactis_subsp._cremoris_KW2 0
Lactococcus_lactis_subsp._cremoris_UC509.9 1
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 0
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 0
Streptococcus_equi_subsp._zooepidemicus 0
Streptococcus_oligofermentans_AS_1.3089 0
Streptococcus_pneumoniae_AP200 0
Streptococcus_pneumoniae_D39 0
Streptococcus_pneumoniae_R6 0
Paenibacillus_mucilaginosus_KNP414 1
Paenibacillus_mucilaginosus_K02 1
Paenibacillus_polymyxa_CR1 1
Paenibacillus_polymyxa_SC2 1
Paenibacillus_polymyxa_E681 1
Listeria_monocytogenes_EGD_sequence 0
Listeria_monocytogenes_N53-1 0
Listeria_monocytogenes_La111 0
Listeria_monocytogenes_serotype_4b_str._LL195 0
Listeria_monocytogenes_07PF0776 0
Listeria_monocytogenes_M7 0
Listeria_monocytogenes_J1-220 0
Listeria_monocytogenes_J1816 0
Listeria_monocytogenes_SLCC5850 0
Listeria_monocytogenes_ATCC_19117 0
Listeria_monocytogenes_L312 0
Listeria_monocytogenes_SLCC2479 0
Listeria_monocytogenes_SLCC7179 0
Listeria_monocytogenes_SLCC2540 0
Listeria_monocytogenes_SLCC2378 0
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 0
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 0
Listeria_monocytogenes_serotype_7_str._SLCC2482 0
Listeria_monocytogenes_08-5578 0
Listeria_monocytogenes_08-5923 0
Listeria_monocytogenes_L99 0
Listeria_monocytogenes_HCC23 0
Listeria_monocytogenes_10403S 0
Listeria_monocytogenes_J0161 0
Listeria_monocytogenes_Finland_1998 0
Listeria_monocytogenes_FSL_R2-561 0
Listeria_monocytogenes_serotype_4b_str._F2365 0
Listeria_monocytogenes_EGD-e 0
Bacillus_toyonensis_BCT-7112 0
Bacillus_thuringiensis_BMB171 1
Echinicola_vietnamensis_DSM_17526 1
Emticicia_oligotrophica_DSM_17448 0
Prevotella_sp._oral_taxon_299_str._F0039 0
Bacteroides_xylanisolvens_XB1A 0
Bacteroides_fragilis_638R 0
Bacteroides_fragilis_NCTC_9343 0
Nonlabens_dokdonensis_DSW-6 0
Psychroflexus_torquis_ATCC_700755 1
Chlamydia_pecorum_P787 0
Chlamydia_pecorum_W73 0
Chlamydia_pecorum_PV3056/3 0
Chlamydia_psittaci_01DC12 0
Chlamydia_psittaci_WC 0
Chlamydia_psittaci_M56 0
Chlamydia_psittaci_WS/RT/E30 0
Chlamydia_psittaci_VS225 0
Chlamydia_psittaci_MN 0
Chlamydia_psittaci_GR9 0
Chlamydia_psittaci_84/55 0
Chlamydia_psittaci_08DC60 0
Chlamydia_psittaci_02DC15 0
Chlamydia_psittaci_C19/98 0
Chlamydia_psittaci_NJ1 0
Chlamydia_psittaci_CP3 0
Chlamydophila_psittaci_RD1 0
Chlamydia_psittaci_Mat116 0
Chlamydophila_psittaci_6BC 0
Chlamydophila_psittaci_6BC 0
Singulisphaera_acidiphila_DSM_18658 6
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 0
Leptospira_interrogans_serovar_Lai_str._56601 4
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 3
Borrelia_burgdorferi_JD1 0
Borrelia_burgdorferi_N40 0
Campylobacter_jejuni_Waterborne_C.jejuni_Outbreak 0
Campylobacter_jejuni_RM1221 0
Campylobacter_jejuni_subsp._jejuni_00-2544 0
Campylobacter_jejuni_subsp._jejuni_00-2538 0
Campylobacter_jejuni_subsp._jejuni_00-2426 0
Campylobacter_jejuni_subsp._jejuni_00-2425 0
Campylobacter_jejuni_subsp._jejuni_PT14 0
Campylobacter_jejuni_subsp._jejuni_S3 0
Campylobacter_jejuni_subsp._jejuni_M1 0
Campylobacter_jejuni_subsp._jejuni_IA3902 0
Campylobacter_jejuni_subsp._jejuni_81116 0
Campylobacter_jejuni_subsp._jejuni_NCTC_11168-BN148 0
Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 0
Helicobacter_pylori_Aklavik86 0
Desulfocapsa_sulfexigens_DSM_10523 0
Geobacter_sp._M18 0
Geobacter_sulfurreducens_PCA 0
Sorangium_cellulosum_So0157-2 1
Myxococcus_stipitatus_DSM_14675 2
Kinetoplastibacterium_blastocrithidii_Candidatus__(ex_Strigomonas_culicis) 0
Kinetoplastibacterium_blastocrithidii_Candidatus__TCC012E 0
Pandoraea_pnomenusa_3kgm 0
Ralstonia_solanacearum_FQY_4 2
Ralstonia_solanacearum_Po82 0
Ralstonia_solanacearum_PSI07 0
Ralstonia_solanacearum_CMR15 1
Ralstonia_solanacearum_GMI1000 2
Octadecabacter_arcticus_238 1
Wolbachia_endosymbiont_strain_TRS_of_Brugia_malayi 1
Wolbachia_endosymbiont_of_Drosophila_simulans_wHa 1
Wolbachia_endosymbiont_of_Drosophila_simulans_wNo 1
Ehrlichia_muris_AS145 0
Ehrlichia_ruminantium_str._Welgevonden 0
Ehrlichia_ruminantium_str._Welgevonden 0
Orientia_tsutsugamushi_str._Ikeda 0
Rickettsia_bellii_RML369-C 6
Rickettsia_canadensis_str._CA410 0
Rickettsia_slovaca_str._D-CWPP 0
Rickettsia_massiliae_str._AZT80 0
Rickettsia_rickettsii_str._Arizona 0
Rickettsia_rickettsii_str._Brazil 1
Rickettsia_rickettsii_str._Hauke 0
Rickettsia_rickettsii_str._Colombia 1
Rickettsia_rickettsii__str._Hlp#2 1
Rickettsia_rickettsii_str._Hino 0
Rickettsia_rickettsii_str._Iowa 0
Bradyrhizobium_oligotrophicum_S58 1
Actinobacillus_suis_H91-0380 0
Vibrio_parahaemolyticus_BB22OP 0
Shewanella_baltica_BA175 0
Shewanella_baltica_OS678 0
Shewanella_baltica_OS223 1
Shewanella_baltica_OS195 0
Shewanella_baltica_OS155 0
Alteromonas_macleodii_str._'Black_Sea_11' 0
Alcanivorax_dieselolei_B5 0
Candidatus_Carsonella_ruddii_CE_isolate_Thao2000 0
Coxiella_burnetii_CbuK_Q154 0
Coxiella_burnetii_CbuG_Q212 0
Coxiella_burnetii_RSA_493 0
Legionella_pneumophila_str._Paris 3
Legionella_pneumophila_str._Lens 4
Legionella_pneumophila_subsp._pneumophila_LPE509 5
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 5
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 5
Legionella_pneumophila_subsp._pneumophila 4
Legionella_pneumophila_subsp._pneumophila 4
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 5
Legionella_pneumophila_2300/99_Alcoy 3
Serratia_marcescens_WW4 0
Erwinia_pyrifoliae_DSM_12163 0
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 0
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 0
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 0
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 0
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1
Enterobacter_aerogenes_EA1509E 0
Escherichia_coli_Xuzhou21 0
Escherichia_coli_O83:H1_str._NRG_857C 1
Escherichia_coli_LF82 1
Escherichia_coli_O103:H2_str._12009 0
Escherichia_coli_O26:H11_str._11368 0
Escherichia_coli_O111:H-_str._11128 0
Escherichia_coli_O157:H7_str._EC4115 0
Escherichia_coli_O157:H7_str._Sakai 0
Pseudomonas_syringae_pv._phaseolicola_1448A 0
Pseudomonas_syringae_pv._syringae_B728a 0
Pseudomonas_putida_H8234 0
Pseudomonas_putida_GB-1 0
Pseudomonas_protegens_CHA0 0
Pseudomonas_fluorescens_F113 0
Acinetobacter_lwoffii__SH145 0
Methylophaga_sp._JAM7 0
Francisella_cf._novicida_Fx1 0
Sulfolobus_islandicus_LAL14/1 0
Sulfolobus_islandicus_REY15A 0
Sulfolobus_islandicus_HVE10/4 0
Sulfolobus_islandicus_Y.G.57.14 0
Sulfolobus_islandicus_L.S.2.15 0
Sulfolobus_islandicus_M.16.27 0
Sulfolobus_islandicus_M.14.25 0
Sulfolobus_islandicus_M.16.4 0
Sulfolobus_islandicus_L.D.8.5 0
Methanosarcina_mazei_Tuc01 0
Ferroplasma_acidarmanus_fer1 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   10
Pan_troglodytes_69_2.1.4   (Chimpanzee)   9
Gorilla_gorilla_69_3.1   (Western gorilla)   13
Pongo_abelii_69_2   (Sumatran orangutan)   15
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   14
Macaca_mulatta_69_1   (Rhesus monkey)   15
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   15
Otolemur_garnettii_69_3   (Small-eared galago)   8
Microcebus_murinus_69_1   (Gray mouse lemur)   16
Rattus_norvegicus_69_3.4   (Norway rat)   11
Mus_musculus_69_38   (House mouse)   12
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   17
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   10
Cavia_porcellus_69_3   (Domestic guinea pig)   11
Oryctolagus_cuniculus_69_2   (Rabbit)   9
Ochotona_princeps_69   (American pika)   14
Tupaia_belangeri_69   (Northern tree shrew)   15
Sus_scrofa_69_10.2   (Pig)   14
Bos_taurus_69_3.1   (Cattle)   12
Vicugna_pacos_69_1   (Alpaca)   13
Tursiops_truncatus_69_1   (Bottlenose dolphin)   9
Mustela_putorius_furo_69_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_69_1   (Giant panda)   12
Canis_familiaris_69_3.1   (Dog)   11
Felis_catus_69   (Domestic cat)   12
Equus_caballus_69_2   (Horse)   12
Myotis_lucifugus_69_2.0   (Little brown bat)   16
Pteropus_vampyrus_69_1   (Large flying fox)   11
Sorex_araneus_69_1   (European shrew)   10
Erinaceus_europaeus_69   (Western European hedgehog)   14
Procavia_capensis_69_1   (Cape rock hyrax)   16
Loxodonta_africana_69_3   (African savanna elephant)   9
Echinops_telfairi_69   (Small Madagascar hedgehog)   18
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   9
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   9
Macropus_eugenii_69_1.0   (Tammar wallaby)   10
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   10
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   11
Ornithorhynchus_anatinus_69_5   (Platypus)   21
Petromyzon_marinus_69_7.0   (Sea lamprey)   13
Meleagris_gallopavo_69_2   (Turkey)   12
Gallus_gallus_69_2   (Chicken)   12
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   13
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   17
Anolis_carolinensis_69_2.0   (Green anole)   10
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   12
Latimeria_chalumnae_69_1   (Coelacanth)   14
Gadus_morhua_69_1   (Atlantic cod)   17
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   27
Takifugu_rubripes_69_4   (Torafugu)   38
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   17
Oryzias_latipes_69_1   (Japanese medaka)   31
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   16
Oreochromis_niloticus_69_1.0   (Nile tilapia)   19
Danio_rerio_69_9   (Zebrafish)   24
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   10
Ciona_intestinalis_69   (Vase tunicate)   21
Drosophila_melanogaster_69_5   (Fruit fly)   7
Caenorhabditis_elegans_69_215   (Roundworm)   7
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1
Arabidopsis_thaliana_10   (Thale cress)   25

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   117
Homo_sapiens__(NCBI_version)   (Human)   20
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   12
Heliconius_numata__(Incomplete) 3
Loa_loa_v3.3_(Request)   (Eye worm)   5
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   17
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   8
Moniliophthora_perniciosa_FA553__(Genome_survey) 36
Encephalitozoon_intestinalis__(endoparasite) 2
Encephalitozoon_cuniculi_(endoparasite) 3
Pinus_sylvestris__(Incomplete)   (Scots pine)   0
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Lotus_japonicus__(Early_assembly) 105
Malus_x_domestica_(Duplicate)   (Apple)   80
Ricinus_communis__(Early_assembly)   (Castor bean)   24
Nicotiana_benthamiana_0.4.4_(Early_draft) 96
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   41
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   39
Phoenix_dactylifera__(Early_draft)   (Date palm)   33
Guillardia_theta_(nucleomorph) 0
Wolbachia_endosymbiont_of_Brugia_malayi_v1.0_(Broad_Institute) 1
NCBI_plasmid_sequences_(Plasmids) 5
PDB_chains_(SCOP_1.75)_(PDB) 5
Protein_Data_Bank_(all_PDB_sequenc) 60
TargetDB__(Targets) 135
Protozoadb_2010_08_(Protozoadb) 172
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 176
STRING_v9.0.5_(STRING) 2074
NCBI_2017_08_genome 26419
NCBI_viral_sequences_(Viral) 8
Uniprot_2018_03_genome 26731
UniProt__viral_sequences_(Viral) 3

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