SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 52058,56112 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52058 - L domain-like
56112 - Protein kinase-like (PK-like)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Danio_rerio_76_9   (Zebrafish)   0
Adineta_vaga 2
Anopheles_darlingi_22   (American malaria mosquito)   0
Acropora_digitifera_v1.0 0
Proterospongia_sp._ATCC_50818_ 0
Monosiga_brevicollis_ 0
Sphaeroforma_arctica_JP610_ 1
Capsaspora_owczarzaki_ATCC_30864_ 4
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 1
Magnaporthe_poae_ATCC_64411_22 1
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 1
Chaetomium_globosum_CBS_148.51_ 1
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1
Glomerella_graminicola_22 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 1
Entamoeba_invadens_1.2 1
Selaginella_moellendorffii_ 23
Pinus_taeda   (Loblolly pine)   71
Picea_abies   (Norway spruce)   34
Eucalyptus_grandis_v201   (Rose gum)   55
Theobroma_cacao_B97-61/B2_v1   (Cacao)   22
Gossypium_raimondii_v221 81
Citrus_clementina_v165 54
Citrus_sinensis_v154   (Sweet orange)   67
Thellungiella_halophila_v173 28
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   37
Capsella_rubella_v183 29
Arabidopsis_lyrata_   (Lyrate rockcress)   28
Arabidopsis_thaliana_10   (Thale cress)   19
Carica_papaya_   (Papaya)   17
Medicago_truncatula_   (Barrel medic)   40
Phaseolus_vulgaris_v186   (French bean)   40
Glycine_max_v109   (Soybean)   71
Cucumis_sativus_v122   (Cucumber)   26
Fragaria_vesca_   (Wild strawberry)   12
Malus_domestica_v196   (Apple)   64
Prunus_persica_v139   (Peach)   27
Linum_usitatissimum_v200   (Flax)   34
Manihot_esculenta_v147   (Cassava)   45
Populus_trichocarpa_v156   (Black cottonwood)   54
Vitis_vinifera_   (Wine grape)   26
Mimulus_guttatus_v140   (Spotted monkey flower)   29
Solanum_lycopersicum_v.2.3   (Tomato)   29
Solanum_tuberosum_   (Potato)   58
Actinidia_chinensis_Hongyang_ 51
Aquilegia_coerulea_v195 36
Triticum_urartu_22 28
Triticum_aestivum_22   (Bread wheat)   83
Aegilops_tauschii_22 35
Brachypodium_distachyon_   (Stiff brome)   15
Oryza_barthii_22   (African wild rice)   19
Oryza_meridionalis_22 18
Oryza_glumaepatula_22 25
Oryza_glaberrima   (African rice)   20
Oryza_punctata_22 29
Oryza_nivara_22 19
Oryza_brachyantha_22   (Malo sina)   19
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   32
Oryza_sativa_v193   (Rice)   32
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   34
Panicum_virgatum_v202   (Switchgrass)   45
Setaria_italica_v164   (Foxtail millet)   19
Zea_mays_subsp._mays_   (Maize)   23
Zea_mays_v181   (Maize)   23
Sorghum_bicolor_   (Sorghum)   9
Musa_balbisiana   (Balbis banana)   19
Musa_acuminata_22   (Wild Malaysian banana)   42
Amborella_trichopoda_22 17
Physcomitrella_patens 27
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 0
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Chlamydomonas_reinhardtii_4.0 1
Ostreococcus_sp._RCC809_ 1
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 0
Micromonas_sp._RCC299_ 1
Micromonas_pusilla_CCMP1545_v3.0 1
Porphyridium_purpureum_02_2012 1
Bigelowiella_natans_CCMP2755_22 1
Ectocarpus_siliculosus 1
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_irregulare_DAOM_BR486_22 1
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   3
Phytophthora_sojae_1.1 0
Phytophthora_infestans_T30-4_ 2
Phytophthora_capsici_ 0
Hyaloperonospora_arabidopsidis_22 1
Phaeodactylum_tricornutumCCAP_1055/1 1
Fragilariopsis_cylindrus 1
Thalassiosira_pseudonana_CCMP1335 1
Paramecium_tetraurelia_ 1
Ichthyophthirius_multifiliis_strain_G5_ 1
Symbiodinium_minutum_clade_B1_v1.2 0
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 1
Microcoleus_sp._PCC_7113 1
Cytophaga_hutchinsonii_ATCC_33406 1
Sulfuricurvum_kujiense_DSM_16994 1
Dechloromonas_aromatica_RCB 1
Leptothrix_cholodnii_SP-6 1
Burkholderia_phytofirmans_PsJN 1
Burkholderia_xenovorans_LB400 1
Burkholderia_sp._CCGE1002 1
Burkholderia_ambifaria_AMMD 1
Burkholderia_cenocepacia_HI2424 1
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_vietnamiensis_G4 1
Burkholderia_gladioli_BSR3 1
Burkholderia_glumae_BGR1 1
Variovorax_paradoxus_S110 1
Acidovorax_citrulli_AAC00-1 1
Comamonas_testosteroni_CNB-2 1
Gallionella_capsiferriformans_ES-2 1
Methylotenera_mobilis_JLW8 1
Asticcacaulis_excentricus_CB_48 1
Methylobacterium_chloromethanicum_CM4 1
Methylobacterium_extorquens_AM1 1
Methylobacterium_sp._4-46 1
Methylobacterium_populi_BJ001 1
Methylobacterium_nodulans_ORS_2060 1
Methylobacterium_radiotolerans_JCM_2831 1
Tolumonas_auensis_DSM_9187 1
Aeromonas_veronii_B565 1
Aeromonas_salmonicida_subsp._salmonicida_A449 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 0
Aliivibrio_salmonicida_LFI1238 1
Vibrio_fischeri_MJ11 1
Photobacterium_profundum_SS9 0
Psychromonas_ingrahamii_37 1
Shewanella_piezotolerans_WP3 1
Shewanella_halifaxensis_HAW-EB4 1
Shewanella_denitrificans_OS217 1
Shewanella_pealeana_ATCC_700345 1
Shewanella_oneidensis_MR-1 1
Shewanella_baltica_OS185 1
Shewanella_woodyi_ATCC_51908 1
Shewanella_sp._MR-4 1
Shewanella_violacea_DSS12 1
Shewanella_frigidimarina_NCIMB_400 1
Shewanella_putrefaciens_CN-32 1
Colwellia_psychrerythraea_34H 1
Pseudoalteromonas_sp._SM9913 1
Pseudoalteromonas_atlantica_T6c 1
Pseudoalteromonas_haloplanktis_TAC125 1
Glaciecola_sp._4H-3-7+YE-5 1
Marinomonas_sp._MWYL1 1
Azotobacter_vinelandii_DJ 1
Pseudomonas_sp._TKP 1
Pseudomonas_sp._UW4 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_entomophila_L48 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1
Pseudomonas_stutzeri_A1501 1
Pseudomonas_fulva_12-X 1
Pseudomonas_protegens_Pf-5 1
Pseudomonas_fluorescens_SBW25 1
Pseudomonas_aeruginosa_UCBPP-PA14 1

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   17
Hordeum_vulgare_22   (Domesticated barley)   60
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   21
Chamaesiphon_minutus_PCC_6605 1
Burkholderia_phenoliruptrix_BR3459a 1
Burkholderia_sp._CCGE1003 1
Burkholderia_sp._CCGE1001 1
Burkholderia_sp._KJ006 1
Burkholderia_lata 1
Burkholderia_ambifaria_MC40-6 1
Burkholderia_cenocepacia_MC0-3 1
Burkholderia_cenocepacia_AU_1054 1
Burkholderia_cenocepacia_J2315 1
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_cepacia_GG4 1
Variovorax_paradoxus_B4 1
Variovorax_paradoxus_EPS 1
Methylobacterium_extorquens_DM4 1
Methylobacterium_extorquens_PA1 1
Aeromonas_hydrophila_ML09-119 1
Vibrio_fischeri_ES114 1
Shewanella_sp._W3-18-1 1
Shewanella_sp._ANA-3 1
Shewanella_baltica_BA175 1
Shewanella_baltica_OS678 1
Shewanella_baltica_OS117 1
Shewanella_baltica_OS223 1
Shewanella_baltica_OS195 1
Shewanella_baltica_OS155 1
Shewanella_sp._MR-7 1
Shewanella_putrefaciens_200 1
Glaciecola_psychrophila_170 1
Azotobacter_vinelandii_CA6 1
Azotobacter_vinelandii_CA 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1
Pseudomonas_syringae_pv._syringae_B728a 1
Pseudomonas_stutzeri_CCUG_29243 1
Pseudomonas_stutzeri_DSM_10701 1
Pseudomonas_stutzeri_DSM_4166 1
Pseudomonas_stutzeri_RCH2 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1
Pseudomonas_protegens_CHA0 1
Pseudomonas_poae_RE*1-1-14 1
Pseudomonas_fluorescens_F113 1
Pseudomonas_fluorescens_A506 1
Pseudomonas_fluorescens_R124 1
Pseudomonas_fluorescens_Pf0-1 1
Pseudomonas_aeruginosa_SCV20265 1
Pseudomonas_aeruginosa_MTB-1 0
Pseudomonas_aeruginosa_LES431 1
Pseudomonas_aeruginosa_RP73 1
Pseudomonas_aeruginosa_B136-33 1
Pseudomonas_aeruginosa_PA1R 1
Pseudomonas_aeruginosa_PA1 1
Pseudomonas_aeruginosa_DK2 1
Pseudomonas_aeruginosa_NCGM2.S1 1
Pseudomonas_aeruginosa_M18 1
Pseudomonas_aeruginosa_LESB58 1
Pseudomonas_aeruginosa_PA7 1
Pseudomonas_aeruginosa_PAO1 1

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Longest transcript per gene
Genome     Number
Danio_rerio_69_9   (Zebrafish)   0
Arabidopsis_thaliana_10   (Thale cress)   15

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 22
Malus_x_domestica_(Duplicate)   (Apple)   64
Ricinus_communis__(Early_assembly)   (Castor bean)   24
Nicotiana_benthamiana_0.4.4_(Early_draft) 49
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   29
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   29
Phoenix_dactylifera__(Early_draft)   (Date palm)   26
TargetDB__(Targets) 15
STRING_v9.0.5_(STRING) 313
Uniprot_2018_03_genome 15186
NCBI_2017_08_genome 8570

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