SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for 52096,51735,48179,48179 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52096 - ClpP/crotonase
51735 - NAD(P)-binding Rossmann-fold domains
48179 - 6-phosphogluconate dehydrogenase C-terminal domain-like
48179 - 6-phosphogluconate dehydrogenase C-terminal domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   2
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   3
Otolemur_garnettii_76_3   (Small-eared galago)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   2
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Cavia_porcellus_76_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Ochotona_princeps_76   (American pika)   1
Tupaia_belangeri_76   (Northern tree shrew)   2
Sus_scrofa_76_10.2   (Pig)   0
Bos_taurus_76_3.1   (Cattle)   1
Ovis_aries_76_3.1   (Sheep)   1
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Canis_familiaris_76_3.1   (Dog)   2
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Ornithorhynchus_anatinus_76_5   (Platypus)   2
Saccoglossus_kowalevskii_v3.0 2
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Meleagris_gallopavo_76_2   (Turkey)   1
Gallus_gallus_76_4   (Chicken)   1
Anas_platyrhynchos_76_1.0   (Mallard)   0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   3
Anolis_carolinensis_76_2.0   (Green anole)   1
Xenopus_laevis_   (African clawed frog)   2
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   2
Latimeria_chalumnae_76_1   (Coelacanth)   0
Lepisosteus_oculatus_76   (Spotted gar)   1
Gadus_morhua_76_1   (Atlantic cod)   3
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   2
Oryzias_latipes_76_1   (Japanese medaka)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   1
Oikopleura_dioica 0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   5
Ciona_intestinalis_76   (Vase tunicate)   2
Adineta_vaga 2
Octopus_bimaculoides_280 0
Crassostrea_gigas_22   (Pacific oyster)   0
Lottia_gigantea_   (Owl limpet)   2
Helobdella_robusta_ 0
Capitella_sp._I_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   0
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_suzukii 0
Drosophila_yakuba_1.3 0
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   2
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Acyrthosiphon_pisum_   (Pea aphid)   1
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   0
Strigamia_maritima_22 0
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Pristionchus_pacificus_ 1
Meloidogyne_hapla_ 0
Onchocerca_volvulus_22 0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 2
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   2
Caenorhabditis_briggsae_2 1
Trichinella_spiralis_22 1
Mnemiopsis_leidyi   (Sea walnut)   1
Thelohanellus_kitauei 1
Hydra_vulgaris 0
Amphimedon_queenslandica 2
Trichoplax_adhaerens_ 2
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 1
Sphaeroforma_arctica_JP610_ 0
Capsaspora_owczarzaki_ATCC_30864_ 1
Selaginella_moellendorffii_ 4
Pinus_taeda   (Loblolly pine)   2
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   7
Theobroma_cacao_B97-61/B2_v1   (Cacao)   4
Gossypium_raimondii_v221 13
Citrus_clementina_v165 3
Citrus_sinensis_v154   (Sweet orange)   9
Thellungiella_halophila_v173 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   6
Capsella_rubella_v183 2
Arabidopsis_lyrata_   (Lyrate rockcress)   2
Arabidopsis_thaliana_10   (Thale cress)   2
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   3
Phaseolus_vulgaris_v186   (French bean)   3
Glycine_max_v109   (Soybean)   8
Cucumis_sativus_v122   (Cucumber)   3
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   4
Prunus_persica_v139   (Peach)   2
Linum_usitatissimum_v200   (Flax)   2
Manihot_esculenta_v147   (Cassava)   3
Populus_trichocarpa_v156   (Black cottonwood)   3
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   4
Solanum_lycopersicum_v.2.3   (Tomato)   6
Solanum_tuberosum_   (Potato)   7
Actinidia_chinensis_Hongyang_ 4
Aquilegia_coerulea_v195 7
Triticum_urartu_22 6
Triticum_aestivum_22   (Bread wheat)   9
Aegilops_tauschii_22 3
Brachypodium_distachyon_   (Stiff brome)   4
Oryza_barthii_22   (African wild rice)   5
Oryza_meridionalis_22 7
Oryza_glumaepatula_22 6
Oryza_glaberrima   (African rice)   4
Oryza_punctata_22 3
Oryza_nivara_22 6
Oryza_brachyantha_22   (Malo sina)   3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   4
Oryza_sativa_v193   (Rice)   4
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   3
Panicum_virgatum_v202   (Switchgrass)   6
Setaria_italica_v164   (Foxtail millet)   5
Zea_mays_subsp._mays_   (Maize)   2
Zea_mays_v181   (Maize)   2
Sorghum_bicolor_   (Sorghum)   2
Musa_balbisiana   (Balbis banana)   2
Musa_acuminata_22   (Wild Malaysian banana)   4
Amborella_trichopoda_22 3
Physcomitrella_patens 3
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 1
Chlorella_vulgaris_ 1
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 1
Ostreococcus_sp._RCC809_ 1
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 1
Micromonas_sp._RCC299_ 1
Micromonas_pusilla_CCMP1545_v3.0 1
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Porphyridium_purpureum_02_2012 0
Thecamonas_trahens_ATCC_50062_ 1
Bigelowiella_natans_CCMP2755_22 1
Leishmania_mexicana_2.4 1
Leishmania_major_strain_Friedlin_ 1
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Trypanosoma_cruzi_strain_CL_Brener 2
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 1
Ectocarpus_siliculosus 2
Aureococcus_anophagefferens_ 1
Albugo_laibachii_22 1
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_ultimum_v1.7-2 1
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_irregulare_DAOM_BR486_22 1
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_sojae_1.1 1
Phytophthora_infestans_T30-4_ 1
Phytophthora_capsici_ 2
Hyaloperonospora_arabidopsidis_22 1
Phaeodactylum_tricornutumCCAP_1055/1 2
Fragilariopsis_cylindrus 3
Thalassiosira_pseudonana_CCMP1335 2
Perkinsus_marinus_ATCC_50983_ 1
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 3
Emiliania_huxleyi_CCMP1516_ 3
Conexibacter_woesei_DSM_14684 1
Rubrobacter_xylanophilus_DSM_9941 1
Ilumatobacter_coccineus 1
Thermobispora_bispora_DSM_43833 1
Nakamurella_multipartita_DSM_44233 1
Modestobacter_marinus 1
Blastococcus_saxobsidens_DD2 1
Geodermatophilus_obscurus_DSM_43160 1
Kineococcus_radiotolerans_SRS30216 1
Catenulispora_acidiphila_DSM_44928 2
Stackebrandtia_nassauensis_DSM_44728 2
Frankia_symbiont_of_Datisca_glomerata 2
Frankia_sp._EAN1pec 3
Frankia_alni_ACN14a 1
Thermobifida_fusca_YX 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 0
Thermomonospora_curvata_DSM_43183 1
Streptosporangium_roseum_DSM_43021 1
Kitasatospora_setae_KM-6054 2
Streptomyces_coelicolor_A3(2) 3
Streptomyces_sp._PAMC26508 2
Streptomyces_flavogriseus_ATCC_33331 2
Streptomyces_sp._SirexAA-E 2
Streptomyces_griseus_subsp._griseus_NBRC_13350 2
Streptomyces_bingchenggensis_BCW-1 2
Streptomyces_violaceusniger_Tu_4113 2
Streptomyces_avermitilis_MA-4680 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2
Streptomyces_scabiei_87.22 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 2
Actinosynnema_mirum_DSM_43827 3
Saccharomonospora_viridis_DSM_43017 1
Pseudonocardia_dioxanivorans_CB1190 2
Saccharopolyspora_erythraea_NRRL_2338 3
Amycolatopsis_mediterranei_U32 2
Kribbella_flavida_DSM_17836 2
Nocardioides_sp._JS614 2
Microlunatus_phosphovorus_NM-1 0
Salinispora_arenicola_CNS-205 1
Salinispora_tropica_CNB-440 1
Verrucosispora_maris_AB-18-032 1
Micromonospora_sp._L5 2
Micromonospora_aurantiaca_ATCC_27029 2
Actinoplanes_sp._N902-109 1
Actinoplanes_sp._SE50/110 2
Actinoplanes_missouriensis_431 2
Segniliparus_rotundus_DSM_44985 1
Tsukamurella_paurometabola_DSM_20162 2
Gordonia_sp._KTR9 1
Gordonia_polyisoprenivorans_VH2 1
Gordonia_bronchialis_DSM_43247 1
Rhodococcus_jostii_RHA1 3
Rhodococcus_equi_103S 2
Rhodococcus_opacus_B4 4
Rhodococcus_erythropolis_PR4 2
Nocardia_cyriacigeorgica_GUH-2 1
Nocardia_farcinica_IFM_10152 1
Amycolicicoccus_subflavus_DQS3-9A1 2
Mycobacterium_massiliense_str._GO_06 1
Mycobacterium_abscessus_ATCC_19977 1
Mycobacterium_sp._JLS 1
Mycobacterium_intracellulare_ATCC_13950 1
Mycobacterium_avium_104 2
Mycobacterium_vanbaalenii_PYR-1 2
Mycobacterium_canettii_CIPT_140010059 1
Mycobacterium_africanum_GM041182 1
Mycobacterium_tuberculosis_KZN_1435 1
Mycobacterium_tuberculosis 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1
Mycobacterium_rhodesiae_NBB3 1
Mycobacterium_ulcerans_Agy99 1
Mycobacterium_gilvum_PYR-GCK 1
Mycobacterium_chubuense_NBB4 1
Mycobacterium_marinum_M 1
Mycobacterium_smegmatis_str._MC2_155 1
Mycobacterium_leprae_Br4923 1
Corynebacterium_resistens_DSM_45100 1
Corynebacterium_kroppenstedtii_DSM_44385 1
Corynebacterium_urealyticum_DSM_7109 1
Corynebacterium_jeikeium_K411 1
Corynebacterium_variabile_DSM_44702 1
Sanguibacter_keddieii_DSM_10542 1
Beutenbergia_cavernae_DSM_12333 1
Leifsonia_xyli_subsp._xyli_str._CTCB07 1
Microbacterium_testaceum_StLB037 1
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 1
Jonesia_denitrificans_DSM_20603 1
Intrasporangium_calvum_DSM_43043 1
Brachybacterium_faecium_DSM_4810 1
Isoptericola_variabilis_225 0
Xylanimonas_cellulosilytica_DSM_15894 1
Cellulomonas_flavigena_DSM_20109 1
Cellulomonas_fimi_ATCC_484 1
[Cellvibrio]_gilvus_ATCC_13127 1
Arthrobacter_phenanthrenivorans_Sphe3 1
Arthrobacter_chlorophenolicus_A6 1
Arthrobacter_aurescens_TC1 1
Arthrobacter_arilaitensis_Re117 1
Kocuria_rhizophila_DC2201 1
Arthrobacter_sp._Rue61a 1
Arthrobacter_sp._FB24 1
Renibacterium_salmoninarum_ATCC_33209 2
Micrococcus_luteus_NCTC_2665 1
Truepera_radiovictrix_DSM_17093 2
Deinococcus_gobiensis_I-0 1
Deinococcus_deserti_VCD115 1
Deinococcus_maricopensis_DSM_21211 1
Deinococcus_geothermalis_DSM_11300 1
Deinococcus_radiodurans_R1 1
Gemmatimonas_aurantiaca_T-27 1
Haliscomenobacter_hydrossis_DSM_1100 1
Saprospira_grandis_str._Lewin 1
Salinibacter_ruber_M8 1
Rhodothermus_marinus_DSM_4252 1
Fibrella_aestuarina 1
Spirosoma_linguale_DSM_74 1
Runella_slithyformis_DSM_19594 1
Waddlia_chondrophila_WSU_86-1044 1
Parachlamydia_acanthamoebae_UV-7 1
Planctomyces_brasiliensis_DSM_5305 1
Pirellula_staleyi_DSM_6068 0
Candidatus_Chloracidobacterium_thermophilum_B 1
Bacteriovorax_marinus_SJ 1
Bdellovibrio_bacteriovorus_HD100 1
Arcobacter_sp._L 1
Arcobacter_nitrofigilis_DSM_7299 1
Desulfarculus_baarsii_DSM_2075 1
Desulfomonile_tiedjei_DSM_6799 3
Syntrophobacter_fumaroxidans_MPOB 1
Haliangium_ochraceum_DSM_14365 4
Sorangium_cellulosum_'So_ce_56' 1
Anaeromyxobacter_sp._Fw109-5 1
Anaeromyxobacter_dehalogenans_2CP-1 1
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 2
Myxococcus_xanthus_DK_1622 2
Myxococcus_fulvus_HW-1 2
Dechloromonas_aromatica_RCB 2
Thauera_sp._MZ1T 1
Azoarcus_sp._KH32C 2
Azoarcus_sp._BH72 1
Aromatoleum_aromaticum_EbN1 1
Dechlorosoma_suillum_PS 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1
Methylibium_petroleiphilum_PM1 1
Thiomonas_intermedia_K12 1
Rubrivivax_gelatinosus_IL144 1
Leptothrix_cholodnii_SP-6 1
Burkholderia_rhizoxinica_HKI_454 1
Burkholderia_phytofirmans_PsJN 2
Burkholderia_phymatum_STM815 2
Burkholderia_xenovorans_LB400 3
Ralstonia_eutropha_JMP134 2
Cupriavidus_taiwanensis_LMG_19424 1
Cupriavidus_metallidurans_CH34 4
Cupriavidus_necator_N-1 4
Ralstonia_eutropha_H16 2
Ralstonia_pickettii_12D 2
Ralstonia_solanacearum_CFBP2957 1
Burkholderia_sp._RPE64 2
Burkholderia_sp._CCGE1002 3
Burkholderia_thailandensis_E264 3
Burkholderia_pseudomallei_1106a 3
Burkholderia_mallei_SAVP1 3
Burkholderia_ambifaria_AMMD 2
Burkholderia_cenocepacia_HI2424 1
Burkholderia_multivorans_ATCC_17616 2
Burkholderia_vietnamiensis_G4 2
Burkholderia_gladioli_BSR3 2
Burkholderia_glumae_BGR1 2
Verminephrobacter_eiseniae_EF01-2 3
Alicycliphilus_denitrificans_K601 4
Ramlibacter_tataouinensis_TTB310 1
Delftia_sp._Cs1-4 2
Delftia_acidovorans_SPH-1 2
Polaromonas_sp._JS666 2
Polaromonas_naphthalenivorans_CJ2 2
Variovorax_paradoxus_S110 3
Rhodoferax_ferrireducens_T118 3
Acidovorax_ebreus_TPSY 2
Acidovorax_sp._KKS102 3
Acidovorax_sp._JS42 2
Acidovorax_citrulli_AAC00-1 2
Acidovorax_avenae_subsp._avenae_ATCC_19860 2
Comamonas_testosteroni_CNB-2 3
Collimonas_fungivorans_Ter331 1
Pusillimonas_sp._T7-7 2
Advenella_kashmirensis_WT001 1
Bordetella_petrii_DSM_12804 2
Bordetella_pertussis_Tohama_I 1
Bordetella_parapertussis_12822 3
Bordetella_bronchiseptica_RB50 3
Achromobacter_xylosoxidans_A8 5
Achromobacter_xylosoxidans 2
Magnetococcus_marinus_MC-1 1
Parvularcula_bermudensis_HTCC2503 1
Asticcacaulis_excentricus_CB_48 1
Brevundimonas_subvibrioides_ATCC_15264 1
Caulobacter_sp._K31 2
Caulobacter_crescentus_NA1000 2
Caulobacter_segnis_ATCC_21756 1
Phenylobacterium_zucineum_HLK1 1
Erythrobacter_litoralis_HTCC2594 1
Sphingopyxis_alaskensis_RB2256 1
Novosphingobium_sp._PP1Y 2
Sphingobium_sp._SYK-6 1
Sphingobium_japonicum_UT26S 7
Sphingobium_chlorophenolicum_L-1 7
Sphingomonas_sp._MM-1 1
Sphingomonas_wittichii_RW1 1
Maricaulis_maris_MCS10 2
Hirschia_baltica_ATCC_49814 1
Hyphomonas_neptunium_ATCC_15444 1
Dinoroseobacter_shibae_DFL_12 2
Phaeobacter_gallaeciensis_2.10 1
Pseudovibrio_sp._FO-BEG1 3
Jannaschia_sp._CCS1 2
Ruegeria_sp._TM1040 2
Ruegeria_pomeroyi_DSS-3 4
Roseobacter_litoralis_Och_149 1
Roseobacter_denitrificans_OCh_114 1
Rhodobacter_sphaeroides_ATCC_17029 2
Rhodobacter_capsulatus_SB_1003 1
Paracoccus_denitrificans_PD1222 3
Tistrella_mobilis_KA081020-065 1
Magnetospirillum_magneticum_AMB-1 1
Rhodospirillum_centenum_SW 2
Azospirillum_lipoferum_4B 1
Azospirillum_sp._B510 2
Acidiphilium_multivorum_AIU301 1
Acidiphilium_cryptum_JF-5 1
Polymorphum_gilvum_SL003B-26A1 2
Candidatus_Puniceispirillum_marinum_IMCC1322 1
Xanthobacter_autotrophicus_Py2 2
Azorhizobium_caulinodans_ORS_571 1
Methylobacterium_chloromethanicum_CM4 1
Methylobacterium_extorquens_AM1 1
Methylobacterium_sp._4-46 2
Methylobacterium_populi_BJ001 1
Methylobacterium_nodulans_ORS_2060 3
Methylobacterium_radiotolerans_JCM_2831 2
Parvibaculum_lavamentivorans_DS-1 2
Ochrobactrum_anthropi_ATCC_49188 2
Brucella_microti_CCM_4915 1
Brucella_pinnipedialis_B2/94 1
Brucella_canis_ATCC_23365 1
Brucella_suis_ATCC_23445 1
Brucella_melitensis_ATCC_23457 1
Brucella_ovis_ATCC_25840 1
Brucella_abortus_S19 2
Sinorhizobium_fredii_NGR234 2
Sinorhizobium_medicae_WSM419 1
Sinorhizobium_meliloti_AK83 1
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 1
Rhizobium_etli_CIAT_652 1
Rhizobium_leguminosarum_bv._viciae_3841 1
Agrobacterium_tumefaciens_str._C58 1
Agrobacterium_radiobacter_K84 1
Agrobacterium_sp._H13-3 1
Agrobacterium_vitis_S4 1
Mesorhizobium_sp._BNC1 3
Mesorhizobium_opportunistum_WSM2075 2
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 2
Mesorhizobium_loti_MAFF303099 2
Methylocella_silvestris_BL2 1
Pelagibacterium_halotolerans_B2 1
Rhodomicrobium_vannielii_ATCC_17100 3
Hyphomicrobium_sp._MC1 1
Hyphomicrobium_denitrificans_ATCC_51888 1
Oligotropha_carboxidovorans_OM4 1
Rhodopseudomonas_palustris_BisA53 2
Nitrobacter_winogradskyi_Nb-255 1
Nitrobacter_hamburgensis_X14 2
Bradyrhizobium_japonicum_USDA_110 2
Bradyrhizobium_sp._ORS_278 2
Methylocystis_sp._SC2 1
Saccharophagus_degradans_2-40 1
Teredinibacter_turnerae_T7901 1
Gallibacterium_anatis_UMN179 1
Haemophilus_parasuis_SH0165 1
Actinobacillus_pleuropneumoniae_serovar_5b_str._L20 1
Oceanimonas_sp._GK1 2
Aeromonas_veronii_B565 2
Aeromonas_salmonicida_subsp._salmonicida_A449 2
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 2
Aliivibrio_salmonicida_LFI1238 1
Vibrio_fischeri_MJ11 2
Vibrio_sp._Ex25 2
Vibrio_harveyi_ATCC_BAA-1116 2
Vibrio_parahaemolyticus_RIMD_2210633 2
Vibrio_splendidus_LGP32 1
Vibrio_anguillarum_775 1
Vibrio_furnissii_NCTC_11218 2
Vibrio_vulnificus_MO6-24/O 2
Vibrio_cholerae_O395 2
Photobacterium_profundum_SS9 2
Psychromonas_ingrahamii_37 1
Psychromonas_sp._CNPT3 1
Idiomarina_loihiensis_L2TR 2
Ferrimonas_balearica_DSM_9799 2
Shewanella_piezotolerans_WP3 2
Shewanella_loihica_PV-4 3
Shewanella_halifaxensis_HAW-EB4 2
Shewanella_sediminis_HAW-EB3 2
Shewanella_denitrificans_OS217 2
Shewanella_pealeana_ATCC_700345 2
Shewanella_oneidensis_MR-1 2
Shewanella_baltica_OS185 2
Shewanella_woodyi_ATCC_51908 3
Shewanella_sp._MR-4 2
Shewanella_amazonensis_SB2B 2
Shewanella_violacea_DSS12 3
Shewanella_frigidimarina_NCIMB_400 2
Shewanella_putrefaciens_CN-32 2
Colwellia_psychrerythraea_34H 1
Pseudoalteromonas_sp._SM9913 2
Pseudoalteromonas_atlantica_T6c 3
Pseudoalteromonas_haloplanktis_TAC125 2
Glaciecola_sp._4H-3-7+YE-5 4
Glaciecola_nitratireducens_FR1064 4
Marinobacter_adhaerens_HP15 3
Marinobacter_sp._BSs20148 2
Marinobacter_hydrocarbonoclasticus_ATCC_49840 3
Marinobacter_aquaeolei_VT8 2
Alteromonas_sp._SN2 3
Alteromonas_macleodii_str._'Deep_ecotype' 3
Kangiella_koreensis_DSM_16069 2
Hahella_chejuensis_KCTC_2396 3
Alcanivorax_borkumensis_SK2 2
Marinomonas_posidonica_IVIA-Po-181 1
Marinomonas_sp._MWYL1 1
Marinomonas_mediterranea_MMB-1 1
Chromohalobacter_salexigens_DSM_3043 1
Halomonas_elongata_DSM_2581 1
Rhodanobacter_denitrificans 1
Pseudoxanthomonas_spadix_BD-a59 1
Pseudoxanthomonas_suwonensis_11-1 1
Stenotrophomonas_maltophilia_K279a 1
Xanthomonas_axonopodis_pv._citri_str._306 1
Xanthomonas_albilineans_GPE_PC73 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 1
Xanthomonas_campestris_pv._campestris_str._B100 1
Alkalilimnicola_ehrlichii_MLHE-1 1
Nitrosococcus_watsonii_C-113 2
Nitrosococcus_halophilus_Nc4 2
Nitrosococcus_oceani_ATCC_19707 2
Coxiella_burnetii_Dugway_5J108-111 1
Legionella_longbeachae_NSW150 1
Legionella_pneumophila_str._Corby 1
gamma_proteobacterium_HdN1 2
Photorhabdus_asymbiotica 2
Photorhabdus_luminescens_subsp._laumondii_TTO1 2
Xenorhabdus_bovienii_SS-2004 2
Xenorhabdus_nematophila_ATCC_19061 2
Providencia_stuartii_MRSN_2154 2
Proteus_mirabilis_HI4320 2
Rahnella_sp._Y9602 2
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 2
Yersinia_pseudotuberculosis_IP_31758 2
Yersinia_pestis_Pestoides_F 1
Yersinia_enterocolitica_subsp._enterocolitica_8081 2
Serratia_sp._AS12 2
Serratia_sp._ATCC_39006 2
Serratia_plymuthica_AS9 2
Serratia_proteamaculans_568 2
Dickeya_dadantii_Ech703 2
Dickeya_zeae_Ech1591 2
Pectobacterium_wasabiae_WPP163 2
Pectobacterium_sp._SCC3193 2
Pectobacterium_atrosepticum_SCRI1043 2
Pectobacterium_carotovorum_subsp._carotovorum_PC1 2
Pantoea_sp._At-9b 2
Pantoea_vagans_C9-1 2
Pantoea_ananatis_LMG_20103 2
Erwinia_tasmaniensis_Et1/99 2
Erwinia_sp._Ejp617 2
Erwinia_billingiae_Eb661 2
Erwinia_pyrifoliae_Ep1/96 2
Erwinia_amylovora_ATCC_49946 2
Escherichia_blattae_DSM_4481 2
Cronobacter_turicensis_z3032 2
Cronobacter_sakazakii_ES15 2
Enterobacteriaceae_bacterium_strain_FGI_57 2
Shigella_sonnei_Ss046 2
Shigella_flexneri_5_str._8401 2
Shigella_dysenteriae_Sd197 2
Shigella_boydii_CDC_3083-94 2
Salmonella_bongori_NCTC_12419 2
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1
Klebsiella_oxytoca_E718 2
Klebsiella_variicola_At-22 2
Klebsiella_pneumoniae_NTUH-K2044 2
Enterobacter_aerogenes_KCTC_2190 2
Escherichia_fergusonii_ATCC_35469 2
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 2
Enterobacter_sp._R4-368 2
Enterobacter_sp._638 2
Enterobacter_asburiae_LF7a 2
Enterobacter_cloacae_subsp._dissolvens_SDM 2
Citrobacter_rodentium_ICC168 2
Citrobacter_koseri_ATCC_BAA-895 2
Azotobacter_vinelandii_DJ 3
Pseudomonas_sp._TKP 2
Pseudomonas_sp._UW4 2
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 3
Pseudomonas_entomophila_L48 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1
Pseudomonas_stutzeri_A1501 2
Pseudomonas_fulva_12-X 2
Pseudomonas_putida_F1 1
Pseudomonas_protegens_Pf-5 3
Pseudomonas_fluorescens_SBW25 2
Pseudomonas_mendocina_ymp 2
Pseudomonas_aeruginosa_UCBPP-PA14 2
Pseudomonas_sp._VLB120 1
Psychrobacter_sp._G 2
Psychrobacter_sp._PRwf-1 2
Psychrobacter_arcticus_273-4 2
Psychrobacter_cryohalolentis_K5 2
Moraxella_catarrhalis_RH4 1
Acinetobacter_oleivorans_DR1 2
Acinetobacter_calcoaceticus_PHEA-2 2
Acinetobacter_sp._ADP1 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   7
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   5
Hordeum_vulgare_22   (Domesticated barley)   1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   4
Trypanosoma_brucei_Lister_427_v4.1 1
Frankia_sp._EuI1c 2
Frankia_sp._CcI3 1
Nocardiopsis_alba_ATCC_BAA-2165 1
Streptomyces_albus_J1074 2
Streptomyces_rapamycinicus_NRRL_5491 2
Streptomyces_davawensis_JCM_4913 2
Streptomyces_fulvissimus_DSM_40593 2
Streptomyces_venezuelae_ATCC_10712 2
Streptomyces_collinus_Tu_365 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 2
Saccharothrix_espanaensis_DSM_44229 2
Amycolatopsis_mediterranei_RB 2
Amycolatopsis_mediterranei_S699 2
Amycolatopsis_mediterranei_S699 2
Amycolatopsis_orientalis_HCCB10007 2
Actinoplanes_friuliensis_DSM_7358 1
Rhodococcus_pyridinivorans_SB3094 1
Rhodococcus_erythropolis_CCM2595 2
Nocardia_brasiliensis_ATCC_700358 2
Mycobacterium_sp._MOTT36Y 1
Mycobacterium_sp._JDM601 1
Mycobacterium_abscessus_subsp._bolletii_50594 1
Mycobacterium_liflandii_128FXT 1
Mycobacterium_sp._KMS 2
Mycobacterium_sp._MCS 2
Mycobacterium_yongonense_05-1390 1
Mycobacterium_intracellulare_MOTT-64 1
Mycobacterium_indicus_pranii_MTCC_9506 1
Mycobacterium_intracellulare_MOTT-02 1
Mycobacterium_avium_subsp._paratuberculosis_MAP4 2
Mycobacterium_avium_subsp._paratuberculosis_K-10 2
Mycobacterium_canettii_CIPT_140070017 1
Mycobacterium_canettii_CIPT_140060008 1
Mycobacterium_canettii_CIPT_140070008 1
Mycobacterium_canettii_CIPT_140070010 1
Mycobacterium_tuberculosis_EAI5/NITR206 1
Mycobacterium_tuberculosis_EAI5 1
Mycobacterium_tuberculosis_CAS/NITR204 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 1
Mycobacterium_tuberculosis_UT205 1
Mycobacterium_tuberculosis_RGTB423 1
Mycobacterium_tuberculosis_CTRI-2 1
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 1
Mycobacterium_tuberculosis_KZN_605 1
Mycobacterium_tuberculosis_KZN_4207 1
Mycobacterium_tuberculosis_CCDC5180 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_H37Ra 1
Mycobacterium_tuberculosis_str._Haarlem 1
Mycobacterium_tuberculosis_F11 1
Mycobacterium_tuberculosis_H37Rv 1
Mycobacterium_tuberculosis_CDC1551 1
Mycobacterium_bovis_AF2122/97 1
Mycobacterium_bovis_BCG_str._Korea_1168P 1
Mycobacterium_bovis_BCG_str._Mexico 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1
Mycobacterium_gilvum_Spyr1 1
Mycobacterium_smegmatis_str._MC2_155 1
Mycobacterium_leprae_TN 1
Mycobacterium_kansasii_ATCC_12478 1
Corynebacterium_terpenotabidum_Y-11 1
Corynebacterium_urealyticum_DSM_7111 1
Leifsonia_xyli_subsp._cynodontis_DSM_46306 1
Clavibacter_michiganensis_subsp._sepedonicus 1
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1
Deinococcus_peraridilitoris_DSM_19664 1
Salinibacter_ruber_DSM_13855 1
Rhodothermus_marinus_SG0.5JP17-172 1
Emticicia_oligotrophica_DSM_17448 1
Singulisphaera_acidiphila_DSM_18658 1
Bdellovibrio_exovorus_JSS 1
Bdellovibrio_bacteriovorus_str._Tiberius 1
Sorangium_cellulosum_So0157-2 1
Anaeromyxobacter_sp._K 1
Anaeromyxobacter_dehalogenans_2CP-C 1
Myxococcus_stipitatus_DSM_14675 2
Burkholderia_phenoliruptrix_BR3459a 2
Pandoraea_pnomenusa_3kgm 1
Ralstonia_pickettii_12J 2
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_Po82 0
Ralstonia_solanacearum_PSI07 1
Ralstonia_solanacearum_CMR15 1
Ralstonia_solanacearum_GMI1000 1
Burkholderia_sp._YI23 2
Burkholderia_sp._CCGE1003 2
Burkholderia_sp._CCGE1001 3
Burkholderia_sp._KJ006 2
Burkholderia_thailandensis_MSMB121 3
Burkholderia_pseudomallei_MSHR305 3
Burkholderia_pseudomallei_NCTC_13179 3
Burkholderia_pseudomallei_BPC006 3
Burkholderia_pseudomallei_1026b 3
Burkholderia_pseudomallei_MSHR346 3
Burkholderia_pseudomallei_668 3
Burkholderia_pseudomallei_1710b 3
Burkholderia_pseudomallei_K96243 3
Burkholderia_mallei_NCTC_10229 3
Burkholderia_mallei_NCTC_10247 3
Burkholderia_mallei_ATCC_23344 2
Burkholderia_lata 3
Burkholderia_ambifaria_MC40-6 2
Burkholderia_cenocepacia_MC0-3 2
Burkholderia_cenocepacia_AU_1054 2
Burkholderia_cenocepacia_J2315 2
Burkholderia_multivorans_ATCC_17616 2
Burkholderia_cepacia_GG4 3
Alicycliphilus_denitrificans_BC 3
Variovorax_paradoxus_B4 2
Variovorax_paradoxus_EPS 2
Bordetella_pertussis_CS 1
Bordetella_parapertussis_18323 3
Bordetella_parapertussis_Bpp5 1
Bordetella_bronchiseptica_MO149 2
Bordetella_bronchiseptica_253 2
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 2
Caulobacter_crescentus_CB15 2
Phaeobacter_gallaeciensis_DSM_17395 3
Phaeobacter_gallaeciensis_DSM_26640 2
Leisingera_methylohalidivorans_DSM_14336 2
Octadecabacter_antarcticus_307 1
Octadecabacter_arcticus_238 1
Rhodobacter_sphaeroides_KD131 2
Rhodobacter_sphaeroides_ATCC_17025 2
Rhodobacter_sphaeroides_2.4.1 2
Paracoccus_aminophilus_JCM_7686 2
Methylobacterium_extorquens_DM4 1
Methylobacterium_extorquens_PA1 1
Brucella_ceti_TE10759-12 1
Brucella_canis_HSK_A52141 1
Brucella_suis_VBI22 1
Brucella_suis_1330 1
Brucella_suis_1330 1
Brucella_melitensis_NI 1
Brucella_melitensis_M5-90 1
Brucella_melitensis_M28 1
Brucella_melitensis_bv._1_str._16M 1
Brucella_abortus_A13334 2
Brucella_melitensis_biovar_Abortus_2308 1
Brucella_abortus_bv._1_str._9-941 1
Sinorhizobium_fredii_USDA_257 2
Sinorhizobium_fredii_HH103 2
Sinorhizobium_meliloti_2011 1
Sinorhizobium_meliloti_GR4 1
Sinorhizobium_meliloti_Rm41 1
Sinorhizobium_meliloti_SM11 1
Sinorhizobium_meliloti_BL225C 1
Sinorhizobium_meliloti_1021 1
Rhizobium_etli_CFN_42 1
Rhizobium_etli_bv._mimosae_str._Mim1 2
Rhizobium_tropici_CIAT_899 2
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1
Mesorhizobium_australicum_WSM2073 2
Hyphomicrobium_nitrativorans_NL23 1
Hyphomicrobium_denitrificans_1NES1 1
Oligotropha_carboxidovorans_OM5 1
Oligotropha_carboxidovorans_OM5 1
Rhodopseudomonas_palustris_DX-1 2
Rhodopseudomonas_palustris_TIE-1 2
Rhodopseudomonas_palustris_HaA2 2
Rhodopseudomonas_palustris_BisB5 2
Rhodopseudomonas_palustris_BisB18 2
Rhodopseudomonas_palustris_CGA009 2
Bradyrhizobium_sp._S23321 3
Bradyrhizobium_sp._BTAi1 2
Bradyrhizobium_oligotrophicum_S58 3
Bradyrhizobium_japonicum_USDA_6 3
Simiduia_agarivorans_SA1_=_DSM_21679 3
Bibersteinia_trehalosi_USDA-ARS-USMARC-192 1
Haemophilus_parasuis_ZJ0906 1
Actinobacillus_suis_H91-0380 1
Actinobacillus_pleuropneumoniae_serovar_3_str._JL03 1
Actinobacillus_pleuropneumoniae_serovar_7_str._AP76 1
Aeromonas_hydrophila_ML09-119 2
Vibrio_fischeri_ES114 2
Vibrio_sp._EJY3 2
Vibrio_parahaemolyticus_BB22OP 2
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 2
Vibrio_anguillarum_Listonella_anguillarum_M3 2
Vibrio_nigripulchritudo_VibrioScope 2
Vibrio_vulnificus_CMCP6 2
Vibrio_vulnificus_YJ016 2
Vibrio_cholerae_LMA3984-4 2
Vibrio_cholerae_M66-2 2
Vibrio_cholerae_O395 2
Vibrio_cholerae_IEC224 2
Vibrio_cholerae_O1_str._2010EL-1786 2
Vibrio_cholerae_MJ-1236 2
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 2
Idiomarina_loihiensis_GSL_199 2
Shewanella_sp._W3-18-1 2
Shewanella_sp._ANA-3 2
Shewanella_baltica_BA175 2
Shewanella_baltica_OS678 2
Shewanella_baltica_OS117 2
Shewanella_baltica_OS223 2
Shewanella_baltica_OS195 2
Shewanella_baltica_OS155 2
Shewanella_sp._MR-7 2
Shewanella_putrefaciens_200 2
Glaciecola_psychrophila_170 3
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 3
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 3
Alteromonas_macleodii_str._'Ionian_Sea_U8' 3
Alteromonas_macleodii_str._'Ionian_Sea_U7' 3
Alteromonas_macleodii_str._'Ionian_Sea_U4' 2
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 3
Alteromonas_macleodii_str._'English_Channel_615' 2
Alteromonas_macleodii_AltDE1 3
Alteromonas_macleodii_str._'English_Channel_673' 3
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 3
Alteromonas_macleodii_str._'Black_Sea_11' 3
Alteromonas_macleodii_ATCC_27126 3
Alcanivorax_dieselolei_B5 3
Thalassolituus_oleivorans_MIL-1 2
Stenotrophomonas_maltophilia_D457 1
Stenotrophomonas_maltophilia_JV3 1
Stenotrophomonas_maltophilia_R551-3 1
Xanthomonas_citri_subsp._citri_Aw12879 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1
Xanthomonas_axonopodis_Xac29-1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1
Xanthomonas_campestris_pv._raphani_756C 1
Xanthomonas_campestris_pv._campestris_str._8004 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1
Thioalkalivibrio_nitratireducens_DSM_14787 1
Coxiella_burnetii_CbuK_Q154 1
Coxiella_burnetii_CbuG_Q212 1
Coxiella_burnetii_RSA_331 1
Coxiella_burnetii_RSA_493 1
Legionella_pneumophila_str._Paris 1
Legionella_pneumophila_str._Lens 1
Legionella_pneumophila_subsp._pneumophila_LPE509 1
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1
Legionella_pneumophila_subsp._pneumophila 1
Legionella_pneumophila_subsp._pneumophila 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 1
Legionella_pneumophila_2300/99_Alcoy 1
Proteus_mirabilis_BB2000 2
Morganella_morganii_subsp._morganii_KT 2
Rahnella_aquatilis_HX2 2
Yersinia_pseudotuberculosis_PB1/+ 1
Yersinia_pseudotuberculosis_YPIII 1
Yersinia_pseudotuberculosis_IP_32953 1
Yersinia_pestis_biovar_Microtus_str._91001 1
Yersinia_pestis_A1122 1
Yersinia_pestis_Z176003 1
Yersinia_pestis_D182038 1
Yersinia_pestis_D106004 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 1
Yersinia_pestis_Nepal516 1
Yersinia_pestis_Antiqua 1
Yersinia_pestis_Angola 1
Yersinia_pestis_CO92 1
Yersinia_pestis_KIM10+ 1
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 2
Yersinia_enterocolitica_subsp._palearctica_Y11 2
Serratia_sp._AS13 2
Serratia_plymuthica_S13 2
Serratia_plymuthica_4Rx13 2
Serratia_marcescens_FGI94 2
Serratia_marcescens_WW4 2
Serratia_liquefaciens_ATCC_27592 2
Dickeya_dadantii_Ech586 2
Dickeya_dadantii_3937 2
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 2
Pantoea_ananatis_LMG_5342 2
Pantoea_ananatis_PA13 2
Pantoea_ananatis_AJ13355 2
Erwinia_pyrifoliae_DSM_12163 2
Erwinia_amylovora_CFBP1430 2
Cronobacter_sakazakii_CMCC_45402 2
Cronobacter_sakazakii_SP291 2
Cronobacter_sakazakii_ATCC_BAA-894 2
Raoultella_ornithinolytica_B6 2
Shigella_sonnei_53G 2
Shigella_flexneri_2002017 2
Shigella_flexneri_2a_str._2457T 2
Shigella_flexneri_2a_str._301 2
Shigella_dysenteriae_1617 1
Shigella_boydii_Sb227 1
Salmonella_bongori_N268-08 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 2
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 2
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 2
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 2
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 2
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 2
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 2
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 2
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 2
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 2
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 2
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 2
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 2
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 2
Salmonella_enterica_serovar_Bovismorbificans_genomics 2
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 2
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 2
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 2
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 2
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 2
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 2
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 2
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 2
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 2
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 2
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 2
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 2
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 2
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 2
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 2
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 2
Klebsiella_oxytoca_KCTC_1686 2
Klebsiella_pneumoniae_JM45 2
Klebsiella_pneumoniae_CG43 2
Klebsiella_pneumoniae_KCTC_2242 2
Klebsiella_pneumoniae_342 2
Klebsiella_pneumoniae_subsp._pneumoniae_1084 2
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 2
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 2
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1
Enterobacter_aerogenes_EA1509E 2
Escherichia_coli_E24377A 2
Escherichia_coli_E._coli_PMV-1 2
Escherichia_coli_JJ1886 2
Escherichia_coli_LY180 2
Escherichia_coli_APEC_O78 2
Escherichia_coli_O7:K1_str._CE10 2
Escherichia_coli_O104:H4_str._2009EL-2050 2
Escherichia_coli_O104:H4_str._2009EL-2071 2
Escherichia_coli_O104:H4_str._2011C-3493 2
Escherichia_coli_NA114 2
Escherichia_coli_P12b 2
Escherichia_coli_str._'clone_D_i2' 1
Escherichia_coli_str._'clone_D_i14' 1
Escherichia_coli_UM146 2
Escherichia_coli_042 2
Escherichia_coli_Xuzhou21 2
Escherichia_coli_IHE3034 2
Escherichia_coli_UMNK88 2
Escherichia_coli_O83:H1_str._NRG_857C 2
Escherichia_coli_ABU_83972 2
Escherichia_coli_KO11FL 2
Escherichia_coli_KO11FL 2
Escherichia_coli_LF82 2
Escherichia_coli_ED1a 2
Escherichia_coli_IAI39 2
Escherichia_coli_UMN026 2
Escherichia_coli_55989 2
Escherichia_coli_S88 2
Escherichia_coli_IAI1 2
Escherichia_coli_W 2
Escherichia_coli_W 2
Escherichia_coli_DH1 2
Escherichia_coli_DH1 2
Escherichia_coli_ATCC_8739 2
Escherichia_coli_BL21(DE3) 2
Escherichia_coli_BL21(DE3) 2
Escherichia_coli_SMS-3-5 2
Escherichia_coli_SE15 2
Escherichia_coli_SE11 2
Escherichia_coli_APEC_O1 1
Escherichia_coli_O103:H2_str._12009 2
Escherichia_coli_UTI89 2
Escherichia_coli_536 2
Escherichia_coli_HS 2
Escherichia_coli_ETEC_H10407 2
Escherichia_coli_O55:H7_str._RM12579 2
Escherichia_coli_O55:H7_str._CB9615 2
Escherichia_coli_O26:H11_str._11368 2
Escherichia_coli_CFT073 2
Escherichia_coli_O111:H-_str._11128 2
Escherichia_coli_O127:H6_str._E2348/69 2
Escherichia_coli_O157:H7_str._TW14359 2
Escherichia_coli_O157:H7_str._EC4115 2
Escherichia_coli_O157:H7_str._Sakai 2
Escherichia_coli_O157:H7_str._EDL933 2
Escherichia_coli_str._K-12_substr._MDS42 2
Escherichia_coli_BW2952 2
Escherichia_coli_str._K-12_substr._MG1655 2
Escherichia_coli_str._K-12_substr._W3110 2
Escherichia_coli_str._K-12_substr._DH10B 2
Escherichia_coli_B_str._REL606 2
Enterobacter_cloacae_SCF1 2
Enterobacter_cloacae_EcWSU1 2
Enterobacter_cloacae_subsp._cloacae_ENHKU01 2
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 2
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 2
Azotobacter_vinelandii_CA6 3
Azotobacter_vinelandii_CA 3
Pseudomonas_denitrificans_ATCC_13867 4
Pseudomonas_syringae_pv._phaseolicola_1448A 1
Pseudomonas_syringae_pv._syringae_B728a 1
Pseudomonas_stutzeri_CCUG_29243 2
Pseudomonas_stutzeri_DSM_10701 2
Pseudomonas_stutzeri_DSM_4166 2
Pseudomonas_stutzeri_RCH2 2
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 2
Pseudomonas_monteilii_SB3101 1
Pseudomonas_monteilii_SB3078 1
Pseudomonas_putida_H8234 1
Pseudomonas_putida_HB3267 2
Pseudomonas_putida_NBRC_14164 2
Pseudomonas_putida_DOT-T1E 1
Pseudomonas_putida_S16 1
Pseudomonas_putida_BIRD-1 1
Pseudomonas_putida_W619 1
Pseudomonas_putida_ND6 1
Pseudomonas_putida_KT2440 1
Pseudomonas_putida_GB-1 1
Pseudomonas_protegens_CHA0 3
Pseudomonas_poae_RE*1-1-14 1
Pseudomonas_fluorescens_F113 2
Pseudomonas_fluorescens_A506 2
Pseudomonas_fluorescens_R124 2
Pseudomonas_fluorescens_Pf0-1 3
Pseudomonas_resinovorans_NBRC_106553 3
Pseudomonas_mendocina_NK-01 3
Pseudomonas_aeruginosa_SCV20265 2
Pseudomonas_aeruginosa_MTB-1 2
Pseudomonas_aeruginosa_LES431 2
Pseudomonas_aeruginosa_RP73 2
Pseudomonas_aeruginosa_B136-33 2
Pseudomonas_aeruginosa_PA1R 2
Pseudomonas_aeruginosa_PA1 2
Pseudomonas_aeruginosa_DK2 2
Pseudomonas_aeruginosa_NCGM2.S1 2
Pseudomonas_aeruginosa_M18 2
Pseudomonas_aeruginosa_LESB58 2
Pseudomonas_aeruginosa_PA7 2
Pseudomonas_aeruginosa_PAO1 2
Acinetobacter_genomosp._13TU__RUH2624 2
Acinetobacter_sp.__SH024 2
Acinetobacter_calcoaceticus_ruh2202 2
Acinetobacter_baumannii_ZW85-1 2
Acinetobacter_baumannii_TYTH-1 2
Acinetobacter_baumannii_BJAB0868 2
Acinetobacter_baumannii_BJAB0715 2
Acinetobacter_baumannii_BJAB07104 2
Acinetobacter_baumannii_TCDC-AB0715 2
Acinetobacter_baumannii_D1279779 2
Acinetobacter_baumannii_MDR-TJ 2
Acinetobacter_baumannii_1656-2 2
Acinetobacter_baumannii__ATCC_19606 2
Acinetobacter_baumannii_AB307-0294 2
Acinetobacter_baumannii_AYE 2
Acinetobacter_baumannii_SDF 2
Acinetobacter_baumannii_MDR-ZJ06 2
Acinetobacter_baumannii_AB0057 2
Acinetobacter_baumannii_ACICU 2
Acinetobacter_radioresistens__SH164 2
Acinetobacter_junii__SH205 2
Acinetobacter_johnsonii__SH046 2
Acinetobacter_lwoffii__SH145 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   2
Cavia_porcellus_69_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   1
Tupaia_belangeri_69   (Northern tree shrew)   2
Sus_scrofa_69_10.2   (Pig)   0
Bos_taurus_69_3.1   (Cattle)   1
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Canis_familiaris_69_3.1   (Dog)   2
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Meleagris_gallopavo_69_2   (Turkey)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_69_2.0   (Green anole)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   0
Gadus_morhua_69_1   (Atlantic cod)   2
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Takifugu_rubripes_69_4   (Torafugu)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_69   (Vase tunicate)   2
Drosophila_melanogaster_69_5   (Fruit fly)   0
Caenorhabditis_elegans_69_215   (Roundworm)   1
Arabidopsis_thaliana_10   (Thale cress)   2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2
Homo_sapiens__(NCBI_version)   (Human)   2
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Loa_loa_v3.3_(Request)   (Eye worm)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Malus_x_domestica_(Duplicate)   (Apple)   4
Ricinus_communis__(Early_assembly)   (Castor bean)   2
Nicotiana_benthamiana_0.4.4_(Early_draft) 5
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   6
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   6
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1
NCBI_plasmid_sequences_(Plasmids) 19
Protein_Data_Bank_(all_PDB_sequenc) 37
STRING_v9.0.5_(STRING) 734
Uniprot_2018_03_genome 145107
PDB_chains_(SCOP_1.75)_(PDB) 1
NCBI_2017_08_genome 87199
Protozoadb_2010_08_(Protozoadb) 7
TargetDB__(Targets) 7

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]