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Domain combinations for 52096,_gap_,141322 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52096 - ClpP/crotonase
141322 - NfeD domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Ilumatobacter_coccineus 1
Anaerolinea_thermophila_UNI-1 1
Thermomicrobium_roseum_DSM_5159 1
Sphaerobacter_thermophilus_DSM_20745 2
Herpetosiphon_aurantiacus_DSM_785 1
Roseiflexus_sp._RS-1 1
Roseiflexus_castenholzii_DSM_13941 1
Chloroflexus_sp._MS-G 1
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aggregans_DSM_9485 1
Chloroflexus_aurantiacus_J-10-fl 1
Natranaerobius_thermophilus_JW/NM-WN-LF 2
Candidatus_Desulforudis_audaxviator_MP104C 1
Clostridium_sticklandii_DSM_519 1
Syntrophothermus_lipocalidus_DSM_12680 1
Alkaliphilus_oremlandii_OhILAs 1
Alkaliphilus_metalliredigens_QYMF 1
Mahella_australiensis_50-1_BON 1
Thermodesulfobium_narugense_DSM_14796 1
Thermoanaerobacter_tengcongensis_MB4 1
Carboxydothermus_hydrogenoformans_Z-2901 1
Ammonifex_degensii_KC4 1
Thermoanaerobacter_pseudethanolicus_ATCC_33223 1
Thermoanaerobacter_sp._X514 1
Thermoanaerobacter_wiegelii_Rt8.B1 1
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 1
Acetohalobium_arabaticum_DSM_5501 1
Halanaerobium_praevalens_DSM_2228 1
Brevibacillus_brevis_NBRC_100599 1
Paenibacillus_sp._JDR-2 1
Solibacillus_silvestris_StLB046 1
Bacillus_sp._JS 1
Bacillus_atrophaeus_1942 1
Bacillus_subtilis_subsp._subtilis_str._168 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_clausii_KSM-K16 1
Bacillus_cellulosilyticus_DSM_2522 1
Ignavibacterium_album_JCM_16511 1
Chlorobium_luteolum_DSM_273 1
Chlorobium_phaeobacteroides_DSM_266 1
Chlorobium_limicola_DSM_245 1
Chlorobaculum_parvum_NCIB_8327 1
Chlorobium_tepidum_TLS 1
Prosthecochloris_aestuarii_DSM_271 1
Niastella_koreensis_GR20-10 1
Rhodothermus_marinus_DSM_4252 2
Belliella_baltica_DSM_15883 1
Cyclobacterium_marinum_DSM_745 1
Marivirga_tractuosa_DSM_4126 1
Cytophaga_hutchinsonii_ATCC_33406 1
Parabacteroides_distasonis_ATCC_8503 1
Odoribacter_splanchnicus_DSM_20712 1
Pedobacter_saltans_DSM_12145 1
Solitalea_canadensis_DSM_3403 2
Parachlamydia_acanthamoebae_UV-7 0
Opitutus_terrae_PB90-1 1
Thermovirga_lienii_DSM_17291 1
Aminobacterium_colombiense_DSM_12261 1
Anaerobaculum_mobile_DSM_13181 1
Brachyspira_murdochii_DSM_12563 1
Brachyspira_intermedia_PWS/A 1
Brachyspira_hyodysenteriae_WA1 1
Treponema_azotonutricium_ZAS-9 1
Treponema_primitia_ZAS-2 1
Thermodesulfatator_indicus_DSM_15286 1
Thermodesulfobacterium_sp._OPB45 1
Desulfurispirillum_indicum_S5 1
Calditerrivibrio_nitroreducens_DSM_19672 1
Denitrovibrio_acetiphilus_DSM_12809 1
Deferribacter_desulfuricans_SSM1 1
Flexistipes_sinusarabici_DSM_4947 1
Sulfurihydrogenibium_sp._YO3AOP1 1
Sulfurihydrogenibium_azorense_Az-Fu1 1
Persephonella_marina_EX-H1 1
Thermocrinis_albus_DSM_14484 1
Aquifex_aeolicus_VF5 1
Hydrogenobacter_thermophilus_TK-6 1
Dictyoglomus_turgidum_DSM_6724 1
Dictyoglomus_thermophilum_H-6-12 1
Candidatus_Solibacter_usitatus_Ellin6076 1
Granulicella_tundricola_MP5ACTX9 1
Candidatus_Koribacter_versatilis_Ellin345 1
Terriglobus_roseus_DSM_18391 1
Acidobacterium_capsulatum_ATCC_51196 1
Thermodesulfovibrio_yellowstonii_DSM_11347 1
Leptospirillum_ferrooxidans_C2-3 1
Bdellovibrio_bacteriovorus_HD100 1
Desulfarculus_baarsii_DSM_2075 1
Desulfobacca_acetoxidans_DSM_11109 1
Syntrophus_aciditrophicus_SB 1
Desulfomonile_tiedjei_DSM_6799 1
Syntrophobacter_fumaroxidans_MPOB 1
Desulfurivibrio_alkaliphilus_AHT2 1
Desulfatibacillum_alkenivorans_AK-01 1
Desulfobacterium_autotrophicum_HRM2 1
Desulfohalobium_retbaense_DSM_5692 1
Desulfomicrobium_baculatum_DSM_4028 1
Desulfovibrio_piezophilus 1
Desulfovibrio_aespoeensis_Aspo-2 1
Desulfovibrio_magneticus_RS-1 1
Desulfovibrio_alaskensis_G20 1
Desulfovibrio_salexigens_DSM_2638 1
Desulfovibrio_africanus_str._Walvis_Bay 1
Geobacter_daltonii_FRC-32 1
Geobacter_sp._M21 1
Geobacter_uraniireducens_Rf4 1
Geobacter_bemidjiensis_Bem 1
Geobacter_sulfurreducens_KN400 1
Geobacter_metallireducens_GS-15 1
Pelobacter_carbinolicus_DSM_2380 1
Anaeromyxobacter_sp._Fw109-5 1
Anaeromyxobacter_dehalogenans_2CP-1 1
Corallococcus_coralloides_DSM_2259 1
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Azoarcus_sp._KH32C 1
Aromatoleum_aromaticum_EbN1 1
Pseudogulbenkiania_sp._NH8B 1
Burkholderia_rhizoxinica_HKI_454 1
Burkholderia_phytofirmans_PsJN 1
Burkholderia_phymatum_STM815 1
Burkholderia_xenovorans_LB400 1
Ralstonia_eutropha_JMP134 1
Cupriavidus_taiwanensis_LMG_19424 1
Cupriavidus_metallidurans_CH34 1
Cupriavidus_necator_N-1 1
Ralstonia_eutropha_H16 1
Ralstonia_pickettii_12D 1
Ralstonia_solanacearum_CFBP2957 1
Burkholderia_sp._RPE64 1
Burkholderia_sp._CCGE1002 1
Burkholderia_thailandensis_E264 1
Burkholderia_pseudomallei_1106a 1
Burkholderia_ambifaria_AMMD 1
Burkholderia_cenocepacia_HI2424 1
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_vietnamiensis_G4 1
Polaromonas_sp._JS666 1
Polaromonas_naphthalenivorans_CJ2 1
Rhodoferax_ferrireducens_T118 1
Pusillimonas_sp._T7-7 1
Bordetella_petrii_DSM_12804 1
Bordetella_bronchiseptica_RB50 1
Achromobacter_xylosoxidans_A8 1
Thiobacillus_denitrificans_ATCC_25259 1
Nitrosospira_multiformis_ATCC_25196 1
Nitrosomonas_eutropha_C91 1
Nitrosomonas_europaea_ATCC_19718 1
Sideroxydans_lithotrophicus_ES-1 1
Parvularcula_bermudensis_HTCC2503 1
Novosphingobium_sp._PP1Y 1
Novosphingobium_aromaticivorans_DSM_12444 1
Methylobacterium_nodulans_ORS_2060 1
Parvibaculum_lavamentivorans_DS-1 1
Sinorhizobium_fredii_NGR234 1
Sinorhizobium_medicae_WSM419 1
Sinorhizobium_meliloti_AK83 1
Mesorhizobium_sp._BNC1 1
Mesorhizobium_opportunistum_WSM2075 1
Mesorhizobium_loti_MAFF303099 1
Nitrobacter_hamburgensis_X14 1
Bradyrhizobium_japonicum_USDA_110 1
Oceanimonas_sp._GK1 1
Vibrio_sp._Ex25 1
Vibrio_harveyi_ATCC_BAA-1116 1
Vibrio_parahaemolyticus_RIMD_2210633 1
Vibrio_splendidus_LGP32 1
Vibrio_furnissii_NCTC_11218 1
Photobacterium_profundum_SS9 1
Psychromonas_ingrahamii_37 1
Ferrimonas_balearica_DSM_9799 1
Shewanella_piezotolerans_WP3 1
Shewanella_loihica_PV-4 1
Shewanella_sediminis_HAW-EB3 1
Shewanella_denitrificans_OS217 1
Shewanella_pealeana_ATCC_700345 1
Shewanella_amazonensis_SB2B 1
Shewanella_violacea_DSS12 1
Colwellia_psychrerythraea_34H 1
Glaciecola_nitratireducens_FR1064 1
Marinobacter_adhaerens_HP15 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1
Marinobacter_aquaeolei_VT8 1
Kangiella_koreensis_DSM_16069 1
Hahella_chejuensis_KCTC_2396 1
Chromohalobacter_salexigens_DSM_3043 1
Halomonas_elongata_DSM_2581 1
Methylomicrobium_alcaliphilum 1
Rhodanobacter_denitrificans 1
Spiribacter_sp._UAH-SP71 1
Alkalilimnicola_ehrlichii_MLHE-1 1
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1
Thioalkalivibrio_sp._K90mix 1
Halorhodospira_halophila_SL1 1
Nitrosococcus_watsonii_C-113 1
Nitrosococcus_halophilus_Nc4 1
Nitrosococcus_oceani_ATCC_19707 1
Coxiella_burnetii_Dugway_5J108-111 1
Legionella_longbeachae_NSW150 1
Legionella_pneumophila_str._Corby 1
Azotobacter_vinelandii_DJ 1
Pseudomonas_entomophila_L48 1
Pseudomonas_stutzeri_A1501 1
Pseudomonas_putida_F1 1
Pseudomonas_mendocina_ymp 1
Pseudomonas_aeruginosa_UCBPP-PA14 1
Pseudomonas_sp._VLB120 1
Methylophaga_sp._JAM1 1
Thiomicrospira_crunogena_XCL-2 1
Candidatus_Caldiarchaeum_subterraneum 1
Candidatus_Korarchaeum_cryptofilum_OPF8 1
Acidilobus_saccharovorans_345-15 1
Fervidicoccus_fontis_Kam940 2
Pyrolobus_fumarii_1A 1
Hyperthermus_butylicus_DSM_5456 1
Ignisphaera_aggregans_DSM_17230 2
Aeropyrum_pernix_K1 1
Thermosphaera_aggregans_DSM_11486 1
Staphylothermus_hellenicus_DSM_12710 1
Staphylothermus_marinus_F1 1
Desulfurococcus_fermentans_DSM_16532 1
Desulfurococcus_kamchatkensis_1221n 1
Desulfurococcus_mucosus_DSM_2162 1
Thermofilum_sp._1910b 1
Thermofilum_pendens_Hrk_5 1
Vulcanisaeta_moutnovskia_768-28 1
Vulcanisaeta_distributa_DSM_14429 1
Caldivirga_maquilingensis_IC-167 1
Pyrobaculum_sp._1860 2
Pyrobaculum_calidifontis_JCM_11548 2
Pyrobaculum_arsenaticum_DSM_13514 2
Pyrobaculum_oguniense_TE7 1
Thermoproteus_neutrophilus_V24Sta 1
Pyrobaculum_aerophilum_str._IM2 1
Pyrobaculum_islandicum_DSM_4184 1
Thermoproteus_uzoniensis_768-20 1
Thermoproteus_tenax_Kra_1 1
Methanosaeta_harundinacea_6Ac 1
Methanosaeta_thermophila_PT 1
Methanosaeta_concilii_GP6 1
Methanosalsum_zhilinae_DSM_4017 1
Methanohalobium_evestigatum_Z-7303 1
Methanococcoides_burtonii_DSM_6242 1
Methanosarcina_acetivorans_C2A 1
Methanosarcina_mazei_Go1 1
Methanosarcina_barkeri_str._Fusaro 1
Methanohalophilus_mahii_DSM_5219 1
Ferroglobus_placidus_DSM_10642 1
Archaeoglobus_profundus_DSM_5631 1
Archaeoglobus_veneficus_SNP6 1
Archaeoglobus_fulgidus_DSM_4304 1
Thermococcus_sp._4557 1
Thermococcus_onnurineus_NA1 1
Thermococcus_kodakarensis_KOD1 1
Thermococcus_gammatolerans_EJ3 1
Thermococcus_sibiricus_MM_739 1
Thermococcus_barophilus_MP 1
Pyrococcus_sp._ST04 1
Pyrococcus_yayanosii_CH1 1
Pyrococcus_horikoshii_OT3 1
Pyrococcus_abyssi_GE5 1
Pyrococcus_furiosus_COM1 1
Thermoplasma_volcanium_GSS1 1
Thermoplasma_acidophilum_DSM_1728 1
Picrophilus_torridus_DSM_9790 1

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Strains
Genome     Number
Deinococcus_peraridilitoris_DSM_19664 1
Thermacetogenium_phaeum_DSM_12270 1
Thermoanaerobacter_sp._X513 1
Halobacteroides_halobius_DSM_5150 1
Thermobacillus_composti_KWC4 1
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 1
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 1
Bacillus_amyloliquefaciens_LFB112 1
Bacillus_amyloliquefaciens_Y2 1
Bacillus_amyloliquefaciens_IT-45 1
Bacillus_amyloliquefaciens_XH7 1
Bacillus_amyloliquefaciens_LL3 1
Bacillus_amyloliquefaciens_TA208 1
Bacillus_amyloliquefaciens_DSM_7 1
Bacillus_subtilis_PY79 1
Bacillus_subtilis_XF-1 1
Bacillus_subtilis_BSn5 1
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1
Bacillus_subtilis_subsp._natto_BEST195 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Chlorobium_phaeobacteroides_BS1 1
Rhodothermus_marinus_SG0.5JP17-172 2
Echinicola_vietnamensis_DSM_17526 1
Hydrogenobacter_thermophilus_TK-6 1
Leptospirillum_ferriphilum_ML-04 1
Bdellovibrio_bacteriovorus_str._Tiberius 1
Desulfocapsa_sulfexigens_DSM_10523 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Geobacter_sp._M18 1
Geobacter_sulfurreducens_PCA 1
Sorangium_cellulosum_So0157-2 1
Anaeromyxobacter_sp._K 1
Anaeromyxobacter_dehalogenans_2CP-C 1
Myxococcus_stipitatus_DSM_14675 1
Burkholderia_phenoliruptrix_BR3459a 1
Ralstonia_pickettii_12J 1
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_Po82 1
Ralstonia_solanacearum_PSI07 1
Ralstonia_solanacearum_CMR15 1
Ralstonia_solanacearum_GMI1000 1
Burkholderia_sp._YI23 1
Burkholderia_sp._CCGE1003 1
Burkholderia_sp._CCGE1001 1
Burkholderia_sp._KJ006 1
Burkholderia_thailandensis_MSMB121 1
Burkholderia_pseudomallei_MSHR305 1
Burkholderia_pseudomallei_NCTC_13179 1
Burkholderia_pseudomallei_BPC006 1
Burkholderia_pseudomallei_1026b 1
Burkholderia_pseudomallei_668 1
Burkholderia_pseudomallei_1710b 1
Burkholderia_pseudomallei_K96243 1
Burkholderia_lata 1
Burkholderia_ambifaria_MC40-6 1
Burkholderia_cenocepacia_MC0-3 1
Burkholderia_cenocepacia_AU_1054 1
Burkholderia_cenocepacia_J2315 1
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_cepacia_GG4 1
Bordetella_bronchiseptica_MO149 1
Bordetella_bronchiseptica_253 1
Sinorhizobium_fredii_USDA_257 1
Sinorhizobium_fredii_HH103 1
Sinorhizobium_meliloti_2011 1
Sinorhizobium_meliloti_GR4 1
Sinorhizobium_meliloti_Rm41 1
Sinorhizobium_meliloti_SM11 1
Sinorhizobium_meliloti_BL225C 1
Sinorhizobium_meliloti_1021 1
Rhizobium_etli_CFN_42 1
Rhizobium_etli_bv._mimosae_str._Mim1 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1
Hyphomicrobium_denitrificans_1NES1 1
Bradyrhizobium_japonicum_USDA_6 1
Vibrio_sp._EJY3 1
Vibrio_parahaemolyticus_BB22OP 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1
Alcanivorax_dieselolei_B5 1
Spiribacter_salinus_M19-40 1
Thioalkalivibrio_nitratireducens_DSM_14787 1
Thioflavicoccus_mobilis_8321 1
Coxiella_burnetii_CbuK_Q154 1
Coxiella_burnetii_CbuG_Q212 1
Coxiella_burnetii_RSA_331 1
Coxiella_burnetii_RSA_493 1
Legionella_pneumophila_str._Paris 1
Legionella_pneumophila_str._Lens 1
Legionella_pneumophila_subsp._pneumophila_LPE509 1
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1
Legionella_pneumophila_subsp._pneumophila 1
Legionella_pneumophila_subsp._pneumophila 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 1
Legionella_pneumophila_2300/99_Alcoy 1
Azotobacter_vinelandii_CA6 1
Azotobacter_vinelandii_CA 1
Pseudomonas_denitrificans_ATCC_13867 1
Pseudomonas_stutzeri_CCUG_29243 1
Pseudomonas_stutzeri_DSM_10701 1
Pseudomonas_stutzeri_DSM_4166 1
Pseudomonas_stutzeri_RCH2 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1
Pseudomonas_monteilii_SB3101 1
Pseudomonas_monteilii_SB3078 1
Pseudomonas_putida_H8234 1
Pseudomonas_putida_HB3267 1
Pseudomonas_putida_NBRC_14164 1
Pseudomonas_putida_DOT-T1E 1
Pseudomonas_putida_S16 1
Pseudomonas_putida_BIRD-1 1
Pseudomonas_putida_W619 1
Pseudomonas_putida_ND6 1
Pseudomonas_putida_KT2440 1
Pseudomonas_putida_GB-1 1
Pseudomonas_resinovorans_NBRC_106553 1
Pseudomonas_aeruginosa_SCV20265 1
Pseudomonas_aeruginosa_MTB-1 1
Pseudomonas_aeruginosa_LES431 1
Pseudomonas_aeruginosa_RP73 1
Pseudomonas_aeruginosa_B136-33 1
Pseudomonas_aeruginosa_PA1R 1
Pseudomonas_aeruginosa_PA1 1
Pseudomonas_aeruginosa_DK2 1
Pseudomonas_aeruginosa_NCGM2.S1 1
Pseudomonas_aeruginosa_M18 1
Pseudomonas_aeruginosa_LESB58 1
Pseudomonas_aeruginosa_PA7 1
Pseudomonas_aeruginosa_PAO1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1
Caldisphaera_lagunensis_DSM_15908 1
Aeropyrum_camini_SY1_=_JCM_12091 1
Methanomethylovorans_hollandica_DSM_15978 1
Methanolobus_psychrophilus_R15 1
Methanosarcina_mazei_Tuc01 1
Archaeoglobus_sulfaticallidus_PM70-1 1
Thermococcus_sp._AM4 1
Thermococcus_sp._CL1 1
Thermococcus_litoralis_DSM_5473 1
Pyrococcus_sp._NA2 1
Pyrococcus_furiosus_DSM_3638 1
Ferroplasma_acidarmanus_fer1 1

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Others
Genome     Number
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1
NCBI_plasmid_sequences_(Plasmids) 14
STRING_v9.0.5_(STRING) 188
Uniprot_2018_03_genome 19824
NCBI_2017_08_genome 8673
TargetDB__(Targets) 2

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