SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 52172,47384,55874 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52172 - CheY-like
47384 - Homodimeric domain of signal transducing histidine kinase
55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Phytophthora_capsici_ 0
Leptolyngbya_sp._PCC_7376 8
Pseudanabaena_sp._PCC_7367 4
Acaryochloris_marina_MBIC11017 5
Synechocystis_sp._PCC_6803 4
Synechococcus_sp._PCC_7502 3
Microcoleus_sp._PCC_7113 6
Trichodesmium_erythraeum_IMS101 2
Geitlerinema_sp._PCC_7407 6
Cyanothece_sp._PCC_8802 2
Gloeocapsa_sp._PCC_7428 0
Halothece_sp._PCC_7418 1
Microcystis_aeruginosa_NIES-843 1
Gloeobacter_violaceus_PCC_7421 1
Rivularia_sp._PCC_7116 14
Calothrix_sp._PCC_7507 5
Anabaena_variabilis_ATCC_29413 11
'Nostoc_azollae'_0708 3
Nostoc_sp._PCC_7107 10
Nostoc_punctiforme_PCC_73102 11
Nostoc_sp._PCC_7120 12
Nostoc_sp._PCC_7524 9
Anabaena_sp._90 3
Actinoplanes_sp._N902-109 0
Actinoplanes_sp._SE50/110 0
Actinoplanes_missouriensis_431 0
Cellulomonas_flavigena_DSM_20109 0
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 2
Herpetosiphon_aurantiacus_DSM_785 2
Roseiflexus_sp._RS-1 2
Roseiflexus_castenholzii_DSM_13941 2
Chloroflexus_sp._MS-G 1
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aggregans_DSM_9485 1
Chloroflexus_aurantiacus_J-10-fl 1
Deinococcus_gobiensis_I-0 1
Deinococcus_deserti_VCD115 1
Deinococcus_maricopensis_DSM_21211 0
Deinococcus_geothermalis_DSM_11300 1
Deinococcus_proteolyticus_MRP 1
Deinococcus_radiodurans_R1 2
Clostridium_thermocellum_ATCC_27405 2
Desulfosporosinus_acidiphilus_SJ4 1
Syntrophobotulus_glycolicus_DSM_8271 1
Clostridium_beijerinckii_NCIMB_8052 2
Clostridium_cellulovorans_743B 1
Caldicellulosiruptor_hydrothermalis_108 1
Caldicellulosiruptor_kristjanssonii_177R1B 1
Caldicellulosiruptor_saccharolyticus_DSM_8903 1
Paenibacillus_terrae_HPL-003 0
Paenibacillus_mucilaginosus_3016 1
Paenibacillus_polymyxa_M1 0
Bacillus_selenitireducens_MLS10 0
Bacillus_cellulosilyticus_DSM_2522 0
Melioribacter_roseus_P3M 0
Niastella_koreensis_GR20-10 2
Chitinophaga_pinensis_DSM_2588 3
Flexibacter_litoralis_DSM_6794 1
Belliella_baltica_DSM_15883 2
Cyclobacterium_marinum_DSM_745 2
Fibrella_aestuarina 1
Dyadobacter_fermentans_DSM_18053 1
Spirosoma_linguale_DSM_74 1
Runella_slithyformis_DSM_19594 3
Odoribacter_splanchnicus_DSM_20712 2
Bacteroides_sp._CF50 1
Prevotella_ruminicola_23 1
Alistipes_finegoldii_DSM_17242 1
Bacteroides_helcogenes_P_36-108 1
Bacteroides_vulgatus_ATCC_8482 1
Bacteroides_thetaiotaomicron_VPI-5482 1
Bacteroides_fragilis_YCH46 1
Pedobacter_saltans_DSM_12145 1
Solitalea_canadensis_DSM_3403 1
Pedobacter_heparinus_DSM_2366 1
Sphingobacterium_sp._21 1
Owenweeksia_hongkongensis_DSM_17368 1
Flavobacterium_johnsoniae_UW101 1
Isosphaera_pallida_ATCC_43644 0
Planctomyces_brasiliensis_DSM_5305 0
Rhodopirellula_baltica_SH_1 0
Coraliomargarita_akajimensis_DSM_45221 3
Opitutus_terrae_PB90-1 4
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 1
Leptospira_interrogans_serovar_Lai_str._IPAV 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 0
Spirochaeta_smaragdinae_DSM_11293 1
Treponema_primitia_ZAS-2 0
Treponema_denticola_ATCC_35405 1
Spirochaeta_africana_DSM_8902 1
Spirochaeta_thermophila_DSM_6192 2
Desulfurispirillum_indicum_S5 3
Elusimicrobium_minutum_Pei191 1
Candidatus_Chloracidobacterium_thermophilum_B 2
Candidatus_Solibacter_usitatus_Ellin6076 0
Candidatus_Koribacter_versatilis_Ellin345 1
Thermodesulfovibrio_yellowstonii_DSM_11347 1
Candidatus_Nitrospira_defluvii 1
Ilyobacter_polytropus_DSM_2926 0
Candidatus_Methylomirabilis_oxyfera 1
Bacteriovorax_marinus_SJ 0
Arcobacter_sp._L 3
Arcobacter_nitrofigilis_DSM_7299 1
Arcobacter_butzleri_RM4018 1
Sulfuricurvum_kujiense_DSM_16994 0
Sulfurimonas_denitrificans_DSM_1251 1
Wolinella_succinogenes_DSM_1740 2
Desulfarculus_baarsii_DSM_2075 2
Desulfobacca_acetoxidans_DSM_11109 1
Desulfurivibrio_alkaliphilus_AHT2 1
Desulfatibacillum_alkenivorans_AK-01 2
Desulfobacterium_autotrophicum_HRM2 1
Desulfococcus_oleovorans_Hxd3 1
Desulfomicrobium_baculatum_DSM_4028 2
Desulfovibrio_piezophilus 1
Desulfovibrio_magneticus_RS-1 4
Desulfovibrio_alaskensis_G20 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1
Desulfovibrio_salexigens_DSM_2638 0
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1
Desulfovibrio_africanus_str._Walvis_Bay 1
Geobacter_daltonii_FRC-32 1
Geobacter_sp._M21 3
Geobacter_uraniireducens_Rf4 2
Geobacter_lovleyi_SZ 3
Geobacter_bemidjiensis_Bem 3
Geobacter_sulfurreducens_KN400 1
Geobacter_metallireducens_GS-15 7
Pelobacter_propionicus_DSM_2379 2
Pelobacter_carbinolicus_DSM_2380 1
Haliangium_ochraceum_DSM_14365 6
Sorangium_cellulosum_'So_ce_56' 3
Anaeromyxobacter_sp._Fw109-5 2
Anaeromyxobacter_dehalogenans_2CP-1 2
Stigmatella_aurantiaca_DW4/3-1 6
Corallococcus_coralloides_DSM_2259 4
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 5
Azoarcus_sp._KH32C 0
Rubrivivax_gelatinosus_IL144 0
Leptothrix_cholodnii_SP-6 1
Burkholderia_phytofirmans_PsJN 1
Burkholderia_phymatum_STM815 2
Burkholderia_xenovorans_LB400 1
Ralstonia_eutropha_JMP134 2
Cupriavidus_taiwanensis_LMG_19424 1
Cupriavidus_metallidurans_CH34 1
Cupriavidus_necator_N-1 1
Ralstonia_eutropha_H16 1
Ralstonia_pickettii_12D 1
Ralstonia_solanacearum_CFBP2957 1
Burkholderia_sp._RPE64 1
Burkholderia_sp._CCGE1002 2
Burkholderia_thailandensis_E264 1
Burkholderia_pseudomallei_1106a 1
Burkholderia_mallei_SAVP1 1
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_vietnamiensis_G4 1
Burkholderia_gladioli_BSR3 2
Burkholderia_glumae_BGR1 2
Ramlibacter_tataouinensis_TTB310 0
Delftia_sp._Cs1-4 0
Delftia_acidovorans_SPH-1 0
Polaromonas_sp._JS666 1
Polaromonas_naphthalenivorans_CJ2 1
Variovorax_paradoxus_S110 1
Acidovorax_ebreus_TPSY 0
Acidovorax_sp._KKS102 1
Acidovorax_sp._JS42 0
Acidovorax_citrulli_AAC00-1 0
Acidovorax_avenae_subsp._avenae_ATCC_19860 0
Herminiimonas_arsenicoxydans 0
Herbaspirillum_seropedicae_SmR1 0
Achromobacter_xylosoxidans 0
Methylobacillus_flagellatus_KT 1
Magnetococcus_marinus_MC-1 0
Parvularcula_bermudensis_HTCC2503 2
Asticcacaulis_excentricus_CB_48 0
Phenylobacterium_zucineum_HLK1 0
Sphingomonas_wittichii_RW1 1
Hirschia_baltica_ATCC_49814 0
Paracoccus_denitrificans_PD1222 1
Rhodospirillum_photometricum_DSM_122 0
Magnetospirillum_magneticum_AMB-1 0
Rhodospirillum_centenum_SW 1
Rhodospirillum_rubrum_F11 0
Azospirillum_lipoferum_4B 0
Azospirillum_sp._B510 0
Azospirillum_brasilense_Sp245 0
Acetobacter_pasteurianus_IFO_3283-01 0
Starkeya_novella_DSM_506 1
Methylobacterium_chloromethanicum_CM4 0
Methylobacterium_extorquens_AM1 0
Methylobacterium_sp._4-46 0
Methylobacterium_populi_BJ001 0
Methylobacterium_nodulans_ORS_2060 0
Methylobacterium_radiotolerans_JCM_2831 2
Sinorhizobium_medicae_WSM419 0
Rhizobium_etli_CIAT_652 0
Rhizobium_leguminosarum_bv._viciae_3841 0
Methylocella_silvestris_BL2 0
Hyphomicrobium_sp._MC1 0
Hyphomicrobium_denitrificans_ATCC_51888 0
Oligotropha_carboxidovorans_OM4 0
Bradyrhizobium_japonicum_USDA_110 1
Bradyrhizobium_sp._ORS_278 0
Saccharophagus_degradans_2-40 1
Teredinibacter_turnerae_T7901 0
Shewanella_woodyi_ATCC_51908 1
Shewanella_sp._MR-4 0
Pseudoalteromonas_sp._SM9913 0
Pseudoalteromonas_atlantica_T6c 0
Pseudoalteromonas_haloplanktis_TAC125 0
Glaciecola_sp._4H-3-7+YE-5 0
Alteromonas_sp._SN2 0
Alteromonas_macleodii_str._'Deep_ecotype' 0
Hahella_chejuensis_KCTC_2396 0
Marinomonas_posidonica_IVIA-Po-181 0
Methylomicrobium_alcaliphilum 2
Methylomonas_methanica_MC09 0
Rhodanobacter_denitrificans 0
Frateuria_aurantia_DSM_6220 0
Pseudoxanthomonas_spadix_BD-a59 0
Pseudoxanthomonas_suwonensis_11-1 0
Stenotrophomonas_maltophilia_K279a 0
Xylella_fastidiosa_M23 0
Xanthomonas_axonopodis_pv._citri_str._306 0
Xanthomonas_albilineans_GPE_PC73 0
Xanthomonas_oryzae_pv._oryzae_PXO99A 0
Xanthomonas_campestris_pv._campestris_str._B100 0
Allochromatium_vinosum_DSM_180 0
Thiocystis_violascens_DSM_198 0
Legionella_pneumophila_str._Corby 0
Pseudomonas_sp._TKP 1
Pseudomonas_sp._UW4 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_entomophila_L48 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1
Pseudomonas_stutzeri_A1501 1
Pseudomonas_fulva_12-X 1
Pseudomonas_putida_F1 1
Pseudomonas_protegens_Pf-5 1
Pseudomonas_fluorescens_SBW25 1
Pseudomonas_mendocina_ymp 1
Pseudomonas_sp._VLB120 1
Cycloclasticus_sp._P1 1
Methanosphaerula_palustris_E1-9c 3
Methanospirillum_hungatei_JF-1 1
Halogeometricum_borinquense_DSM_11551 1
Halorhabdus_utahensis_DSM_12940 0
Haloarcula_hispanica_ATCC_33960 1
Haloarcula_marismortui_ATCC_43049 1

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Strains
Genome     Number
Chroococcidiopsis_thermalis_PCC_7203 2
Chamaesiphon_minutus_PCC_6605 1
Synechocystis_sp._PCC_6803_substr._PCC-P 4
Synechocystis_sp._PCC_6803_substr._PCC-N 4
Synechocystis_sp._PCC_6803_substr._GT-I 4
Synechocystis_sp._PCC_6803 4
Dactylococcopsis_salina_PCC_8305 1
Synechococcus_sp._JA-2-3B'a(2-13) 0
Synechococcus_sp._JA-3-3Ab 0
Synechococcus_sp._PCC_7002 4
Crinalium_epipsammum_PCC_9333 5
Oscillatoria_nigro-viridis_PCC_7112 16
Oscillatoria_acuminata_PCC_6304 15
Arthrospira_platensis_NIES-39 8
Cyanothece_sp._PCC_7822 7
Cyanothece_sp._PCC_7425 2
Cyanothece_sp._PCC_7424 5
Cyanothece_sp._ATCC_51142 2
Cyanothece_sp._PCC_8801 2
Cyanobacterium_aponinum_PCC_10605 3
Cyanobacterium_stanieri_PCC_7202 4
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 4
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 3
Stanieria_cyanosphaera_PCC_7437 5
Calothrix_parietina_Calothrix_sp._PCC_6303 9
Cylindrospermum_stagnale_PCC_7417 7
Anabaena_cylindrica_PCC_7122 8
Actinoplanes_friuliensis_DSM_7358 0
Deinococcus_peraridilitoris_DSM_19664 0
Clostridium_thermocellum_DSM_1313 2
Clostridium_saccharobutylicum_DSM_13864 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 3
Clostridium_pasteurianum_BC1 1
Paenibacillus_sp._Y412MC10 0
Paenibacillus_mucilaginosus_KNP414 2
Paenibacillus_mucilaginosus_K02 2
Paenibacillus_larvae_subsp._larvae_DSM_25430 1
Paenibacillus_polymyxa_CR1 0
Paenibacillus_polymyxa_SC2 0
Paenibacillus_polymyxa_E681 0
Echinicola_vietnamensis_DSM_17526 2
Bacteroides_xylanisolvens_XB1A 1
Bacteroides_fragilis_638R 1
Bacteroides_fragilis_NCTC_9343 1
Psychroflexus_torquis_ATCC_700755 1
Singulisphaera_acidiphila_DSM_18658 5
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 1
Leptospira_interrogans_serovar_Lai_str._56601 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 0
Spirochaeta_thermophila_DSM_6578 2
Arcobacter_butzleri_7h1h 1
Desulfocapsa_sulfexigens_DSM_10523 2
Desulfobacula_toluolica_Tol2 2
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 0
Desulfovibrio_vulgaris_RCH1 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1
Desulfovibrio_vulgaris_str._Hildenborough 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 2
Desulfovibrio_desulfuricans_ND132 2
Geobacter_sp._M18 4
Geobacter_sulfurreducens_PCA 1
Sorangium_cellulosum_So0157-2 4
Anaeromyxobacter_sp._K 2
Anaeromyxobacter_dehalogenans_2CP-C 2
Myxococcus_stipitatus_DSM_14675 1
Burkholderia_phenoliruptrix_BR3459a 1
Ralstonia_pickettii_12J 1
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_Po82 1
Ralstonia_solanacearum_PSI07 1
Ralstonia_solanacearum_CMR15 1
Ralstonia_solanacearum_GMI1000 1
Burkholderia_sp._YI23 1
Burkholderia_sp._CCGE1003 1
Burkholderia_sp._CCGE1001 1
Burkholderia_sp._KJ006 1
Burkholderia_thailandensis_MSMB121 1
Burkholderia_pseudomallei_MSHR305 1
Burkholderia_pseudomallei_NCTC_13179 1
Burkholderia_pseudomallei_BPC006 1
Burkholderia_pseudomallei_1026b 1
Burkholderia_pseudomallei_668 1
Burkholderia_pseudomallei_1710b 1
Burkholderia_pseudomallei_K96243 1
Burkholderia_mallei_NCTC_10229 1
Burkholderia_mallei_NCTC_10247 1
Burkholderia_mallei_ATCC_23344 1
Burkholderia_ambifaria_MC40-6 1
Burkholderia_multivorans_ATCC_17616 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 0
Variovorax_paradoxus_B4 1
Variovorax_paradoxus_EPS 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 0
Magnetospirillum_gryphiswaldense_MSR-1_v2 0
Rhodospirillum_rubrum_ATCC_11170 0
Acetobacter_pasteurianus_386B 0
Acetobacter_pasteurianus_IFO_3283-12 0
Acetobacter_pasteurianus_IFO_3283-01-42C 0
Acetobacter_pasteurianus_IFO_3283-32 0
Acetobacter_pasteurianus_IFO_3283-07 0
Methylobacterium_extorquens_DM4 0
Methylobacterium_extorquens_PA1 0
Rhizobium_etli_CFN_42 0
Rhizobium_etli_bv._mimosae_str._Mim1 0
Rhizobium_leguminosarum_bv._trifolii_WSM2304 0
Rhizobium_leguminosarum_bv._trifolii_WSM1325 0
Hyphomicrobium_denitrificans_1NES1 0
Oligotropha_carboxidovorans_OM5 0
Oligotropha_carboxidovorans_OM5 0
Bradyrhizobium_sp._S23321 0
Bradyrhizobium_sp._BTAi1 0
Bradyrhizobium_oligotrophicum_S58 0
Simiduia_agarivorans_SA1_=_DSM_21679 1
Shewanella_sp._ANA-3 0
Shewanella_sp._MR-7 0
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 0
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U8' 0
Alteromonas_macleodii_str._'Ionian_Sea_U7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U4' 0
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 0
Alteromonas_macleodii_str._'English_Channel_615' 0
Alteromonas_macleodii_AltDE1 0
Alteromonas_macleodii_str._'English_Channel_673' 0
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 0
Alteromonas_macleodii_str._'Black_Sea_11' 0
Alteromonas_macleodii_ATCC_27126 0
Thalassolituus_oleivorans_MIL-1 0
Stenotrophomonas_maltophilia_D457 0
Stenotrophomonas_maltophilia_JV3 0
Stenotrophomonas_maltophilia_R551-3 0
Xylella_fastidiosa_subsp._fastidiosa_GB514 0
Xylella_fastidiosa_Temecula1 0
Xylella_fastidiosa_9a5c 0
Xanthomonas_citri_subsp._citri_Aw12879 0
Xanthomonas_campestris_pv._vesicatoria_str._85-10 0
Xanthomonas_axonopodis_pv._citrumelo_F1 0
Xanthomonas_axonopodis_Xac29-1 0
Xanthomonas_oryzae_pv._oryzicola_BLS256 0
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 0
Xanthomonas_oryzae_pv._oryzae_KACC_10331 0
Xanthomonas_campestris_pv._raphani_756C 0
Xanthomonas_campestris_pv._campestris_str._8004 0
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 0
Legionella_pneumophila_str._Paris 0
Legionella_pneumophila_str._Lens 0
Legionella_pneumophila_subsp._pneumophila_LPE509 0
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 0
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 0
Legionella_pneumophila_subsp._pneumophila 0
Legionella_pneumophila_subsp._pneumophila 0
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 0
Legionella_pneumophila_2300/99_Alcoy 0
Pseudomonas_syringae_pv._phaseolicola_1448A 1
Pseudomonas_syringae_pv._syringae_B728a 1
Pseudomonas_stutzeri_CCUG_29243 1
Pseudomonas_stutzeri_DSM_10701 1
Pseudomonas_stutzeri_DSM_4166 1
Pseudomonas_stutzeri_RCH2 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1
Pseudomonas_monteilii_SB3101 1
Pseudomonas_monteilii_SB3078 1
Pseudomonas_putida_H8234 1
Pseudomonas_putida_HB3267 1
Pseudomonas_putida_NBRC_14164 1
Pseudomonas_putida_DOT-T1E 1
Pseudomonas_putida_S16 1
Pseudomonas_putida_BIRD-1 1
Pseudomonas_putida_W619 1
Pseudomonas_putida_ND6 1
Pseudomonas_putida_KT2440 1
Pseudomonas_putida_GB-1 1
Pseudomonas_protegens_CHA0 0
Pseudomonas_poae_RE*1-1-14 1
Pseudomonas_fluorescens_F113 1
Pseudomonas_fluorescens_A506 1
Pseudomonas_fluorescens_R124 1
Pseudomonas_fluorescens_Pf0-1 1
Pseudomonas_mendocina_NK-01 1
Cycloclasticus_zancles_7-ME 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1
Natronomonas_moolapensis_8.8.11 1
Haloarcula_hispanica_N601 1

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 10
TargetDB__(Targets) 10
STRING_v9.0.5_(STRING) 221
Uniprot_2018_03_genome 32634
NCBI_2017_08_genome 7195

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