SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 52518,52467,52518,54826,51604,53474 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52518 - Thiamin diphosphate-binding fold (THDP-binding)
52467 - DHS-like NAD/FAD-binding domain
52518 - Thiamin diphosphate-binding fold (THDP-binding)
54826 - Enolase N-terminal domain-like
51604 - Enolase C-terminal domain-like
53474 - alpha/beta-Hydrolases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Selaginella_moellendorffii_ 2
Eucalyptus_grandis_v201   (Rose gum)   2
Gossypium_raimondii_v221 1
Citrus_clementina_v165 0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   0
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Prunus_persica_v139   (Peach)   0
Manihot_esculenta_v147   (Cassava)   1
Populus_trichocarpa_v156   (Black cottonwood)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Aquilegia_coerulea_v195 0
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 0
Oryza_nivara_22 0
Setaria_italica_v164   (Foxtail millet)   0
Sorghum_bicolor_   (Sorghum)   0
Amborella_trichopoda_22 0
Ostreococcus_tauri_ 0
Bathycoccus_prasinos_ 0

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 2
STRING_v9.0.5_(STRING) 0
Uniprot_2018_03_genome 480
NCBI_2017_08_genome 44

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