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Domain combinations for 52540,_gap_,75553,_gap_,52540,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52540 - P-loop containing nucleoside triphosphate hydrolases
75553 - Smc hinge domain
52540 - P-loop containing nucleoside triphosphate hydrolases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Pongo_abelii_76_2   (Sumatran orangutan)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Ochotona_princeps_76   (American pika)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_76_2.0   (Green anole)   1
Xenopus_laevis_   (African clawed frog)   2
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Octopus_bimaculoides_280 1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   0
Caenorhabditis_brenneri_ 2
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 1
Taenia_solium_   (Pork tapeworm)   0
Hydra_vulgaris 1
Proterospongia_sp._ATCC_50818_ 1
Conidiobolus_coronatus_NRRL28638_v1.0 1
Mortierella_verticillata_NRRL_6337_ 1
Rhizopus_oryzae_RA_99-880_ 1
Rhizomucor_miehei_CAU432_ 0
Mixia_osmundae_IAM_14324_v1.0 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Sporobolomyces_roseus_IAM_13481_ 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Stereum_hirsutum_FP-91666_SS1__v1.0 1
Fomitiporia_mediterranea_v1.0 1
Phanerochaete_chrysosporium_RP-78_2.1 1
Sporotrichum_thermophile_ATCC_42464_ 1
Chaetomium_globosum_CBS_148.51_ 2
Neurospora_discreta_FGSC_8579_ 0
Glomerella_graminicola_22 1
Botrytis_cinerea_B05.10_ 1
Setosphaeria_turcica_v1.0 0
Microsporum_canis_CBS_113480_ 1
Trichophyton_verrucosum_HKI_0517_ 0
Arthroderma_benhamiae_CBS_112371_ 1
Candida_tropicalis_MYA-3404_ 1
Candida_albicans_SC5314 1
Candida_lusitaniae_ATCC_42720_ 0
Vanderwaltozyma_polyspora_DSM_70294_ 0
Lachancea_kluyveri_ 0
Zygosaccharomyces_rouxii_ 0
Saccharomyces_paradoxus_MIT 0
Schizosaccharomyces_japonicus_yFS275_ 0
Dictyostelium_discoideum 0
Entamoeba_invadens_1.2 1
Entamoeba_histolytica_1 1
Eucalyptus_grandis_v201   (Rose gum)   0
Gossypium_raimondii_v221 1
Citrus_sinensis_v154   (Sweet orange)   1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1
Arabidopsis_lyrata_   (Lyrate rockcress)   1
Medicago_truncatula_   (Barrel medic)   3
Linum_usitatissimum_v200   (Flax)   1
Manihot_esculenta_v147   (Cassava)   0
Populus_trichocarpa_v156   (Black cottonwood)   1
Solanum_lycopersicum_v.2.3   (Tomato)   0
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 1
Aegilops_tauschii_22 0
Oryza_meridionalis_22 0
Setaria_italica_v164   (Foxtail millet)   1
Sorghum_bicolor_   (Sorghum)   1
Musa_balbisiana   (Balbis banana)   1
Physcomitrella_patens 1
Giardia_lamblia_2.3 0
Pythium_iwayamai_DAOM_BR242034_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Perkinsus_marinus_ATCC_50983_ 0
Paramecium_tetraurelia_ 3
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Plasmodium_knowlesi_strain_H_ 0
Trichomonas_vaginalis_ 1
Guillardia_theta_CCMP2712_v1.0_ 1
Synechococcus_sp._PCC_6312 1
cyanobacterium_UCYN-A 1
Acidaminococcus_fermentans_DSM_20731 0
Clostridium_phytofermentans_ISDg 1
Thermoanaerobacter_wiegelii_Rt8.B1 1
Niastella_koreensis_GR20-10 0
Fervidobacterium_pennivorans_DSM_9078 1
Persephonella_marina_EX-H1 1
Aquifex_aeolicus_VF5 0
Ilyobacter_polytropus_DSM_2926 1
Taylorella_equigenitalis_MCE9 1
Methylocella_silvestris_BL2 0
Acinetobacter_baumannii_ATCC_17978 1

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Strains
Genome     Number
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 2
Candida_albicans_WO-1_ 1
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_AWRI796 1
Saccharomyces_cerevisiae_Sigma1278b 1
Arthrospira_platensis_NIES-39 1
Cyanothece_sp._ATCC_51142 1
Streptococcus_oligofermentans_AS_1.3089 1
Staphylococcus_aureus_Bmb9393 1
Staphylococcus_aureus_M1 1
Staphylococcus_aureus_subsp._aureus_VC40 1
Staphylococcus_aureus_subsp._aureus_T0131 1
Staphylococcus_aureus_subsp._aureus_str._JKD6008 1
Staphylococcus_aureus_subsp._aureus_str._Newman 1
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 1
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 1
Staphylococcus_aureus_subsp._aureus_COL 1
Staphylococcus_aureus_subsp._aureus_NCTC_8325 1
Taylorella_equigenitalis_14/56 1
Taylorella_equigenitalis_ATCC_35865 1

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Longest transcript per gene
Genome     Number
Pongo_abelii_69_2   (Sumatran orangutan)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Rattus_norvegicus_69_3.4   (Norway rat)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Ochotona_princeps_69   (American pika)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Felis_catus_69   (Domestic cat)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Anolis_carolinensis_69_2.0   (Green anole)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1

Others
Genome     Number
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
TargetDB__(Targets) 1
Protozoadb_2010_08_(Protozoadb) 6
STRING_v9.0.5_(STRING) 27
Uniprot_2018_03_genome 6936
NCBI_2017_08_genome 2404

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