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Domain combinations for 53822,_gap_,81324,53850 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

53822 - Periplasmic binding protein-like I
81324 - Voltage-gated potassium channels
53850 - Periplasmic binding protein-like II

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   11
Pan_troglodytes_76_2.1.4   (Chimpanzee)   3
Gorilla_gorilla_76_3.1   (Western gorilla)   3
Pongo_abelii_76_2   (Sumatran orangutan)   2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3
Papio_anubis_76   (Olive baboon)   3
Macaca_mulatta_76_1   (Rhesus monkey)   5
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   5
Otolemur_garnettii_76_3   (Small-eared galago)   2
Microcebus_murinus_76_1   (Gray mouse lemur)   2
Rattus_norvegicus_76_5.0   (Norway rat)   4
Mus_musculus_76_38   (House mouse)   6
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Cavia_porcellus_76_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ochotona_princeps_76   (American pika)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   2
Bos_taurus_76_3.1   (Cattle)   3
Ovis_aries_76_3.1   (Sheep)   3
Vicugna_pacos_76_1   (Alpaca)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   2
Canis_familiaris_76_3.1   (Dog)   3
Felis_catus_76_6.2   (Domestic cat)   2
Equus_caballus_76_2   (Horse)   3
Myotis_lucifugus_76_2.0   (Little brown bat)   2
Pteropus_vampyrus_76_1   (Large flying fox)   4
Erinaceus_europaeus_76   (Western European hedgehog)   2
Procavia_capensis_76_1   (Cape rock hyrax)   1
Loxodonta_africana_76_3   (African savanna elephant)   3
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   3
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_76_5   (Platypus)   2
Saccoglossus_kowalevskii_v3.0 1
Meleagris_gallopavo_76_2   (Turkey)   2
Gallus_gallus_76_4   (Chicken)   5
Anas_platyrhynchos_76_1.0   (Mallard)   2
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   4
Anolis_carolinensis_76_2.0   (Green anole)   3
Xenopus_laevis_   (African clawed frog)   4
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   5
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   3
Gadus_morhua_76_1   (Atlantic cod)   4
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   3
Takifugu_rubripes_76_4   (Torafugu)   15
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   11
Oryzias_latipes_76_1   (Japanese medaka)   6
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   5
Astyanax_mexicanus_76   (Mexican tetra)   6
Danio_rerio_76_9   (Zebrafish)   5
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   2
Adineta_vaga 1
Octopus_bimaculoides_280 0
Crassostrea_gigas_22   (Pacific oyster)   0
Lottia_gigantea_   (Owl limpet)   3
Helobdella_robusta_ 2
Capitella_sp._I_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Heliconius_melpomene_   (Postman butterfly)   1
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   11
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 0
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_suzukii 0
Drosophila_yakuba_1.3 0
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2
Acyrthosiphon_pisum_   (Pea aphid)   2
Rhodnius_prolixus_22 3
Daphnia_pulex_   (Common water flea)   1
Strigamia_maritima_22 2
Sarcoptes_scabiei 2
Tetranychus_urticae_   (Two-spotted spider mite)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_brenneri_ 2
Hymenolepis_microstoma_ 1
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 1
Taenia_solium_   (Pork tapeworm)   2
Schistosoma_mansoni_ 0
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Eucalyptus_grandis_v201   (Rose gum)   0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_thaliana_10   (Thale cress)   0
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   0
Prunus_persica_v139   (Peach)   0
Manihot_esculenta_v147   (Cassava)   0
Triticum_aestivum_22   (Bread wheat)   0
Aegilops_tauschii_22 0
Oryza_glaberrima   (African rice)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Panicum_virgatum_v202   (Switchgrass)   0
Amborella_trichopoda_22 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   7
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   4
Pan_troglodytes_69_2.1.4   (Chimpanzee)   3
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3
Macaca_mulatta_69_1   (Rhesus monkey)   4
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   2
Otolemur_garnettii_69_3   (Small-eared galago)   2
Microcebus_murinus_69_1   (Gray mouse lemur)   2
Rattus_norvegicus_69_3.4   (Norway rat)   2
Mus_musculus_69_38   (House mouse)   4
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   1
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   2
Bos_taurus_69_3.1   (Cattle)   3
Vicugna_pacos_69_1   (Alpaca)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_69_1   (Giant panda)   2
Canis_familiaris_69_3.1   (Dog)   2
Equus_caballus_69_2   (Horse)   3
Myotis_lucifugus_69_2.0   (Little brown bat)   2
Pteropus_vampyrus_69_1   (Large flying fox)   4
Erinaceus_europaeus_69   (Western European hedgehog)   2
Procavia_capensis_69_1   (Cape rock hyrax)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_69_5   (Platypus)   2
Meleagris_gallopavo_69_2   (Turkey)   2
Gallus_gallus_69_2   (Chicken)   2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3
Anolis_carolinensis_69_2.0   (Green anole)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   2
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gadus_morhua_69_1   (Atlantic cod)   4
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   3
Takifugu_rubripes_69_4   (Torafugu)   3
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   8
Oryzias_latipes_69_1   (Japanese medaka)   4
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   3
Danio_rerio_69_9   (Zebrafish)   3
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Drosophila_melanogaster_69_5   (Fruit fly)   0
Arabidopsis_thaliana_10   (Thale cress)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   12
Homo_sapiens__(NCBI_version)   (Human)   5
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Loa_loa_v3.3_(Request)   (Eye worm)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Malus_x_domestica_(Duplicate)   (Apple)   0
Ricinus_communis__(Early_assembly)   (Castor bean)   0
TargetDB__(Targets) 8
Protein_Data_Bank_(all_PDB_sequenc) 0
STRING_v9.0.5_(STRING) 59
Uniprot_2018_03_genome 7830
NCBI_2017_08_genome 2276

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