SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 53850,47384,55874 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

53850 - Periplasmic binding protein-like II
47384 - Homodimeric domain of signal transducing histidine kinase
55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Phytophthora_capsici_ 0
Leptolyngbya_sp._PCC_7376 0
Eggerthella_lenta_DSM_2243 0
Faecalibacterium_prausnitzii 0
Dehalobacter_sp._DCA 0
Dehalobacter_sp._CF 0
Acetobacterium_woodii_DSM_1030 0
Clostridium_sticklandii_DSM_519 0
[Ruminococcus]_obeum 0
Roseburia_hominis_A2-183 0
Alkaliphilus_metalliredigens_QYMF 1
Marivirga_tractuosa_DSM_4126 2
Parabacteroides_distasonis_ATCC_8503 0
Prevotella_ruminicola_23 3
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Opitutus_terrae_PB90-1 1
Borrelia_garinii_PBi 0
Borrelia_bissettii_DN127 0
Borrelia_afzelii_PKo 0
Borrelia_burgdorferi_B31 0
Borrelia_recurrentis_A1 0
Borrelia_duttonii_Ly 0
Borrelia_crocidurae_str._Achema 0
Borrelia_turicatae_91E135 0
Borrelia_hermsii_DAH 0
Sphaerochaeta_pleomorpha_str._Grapes 0
Sphaerochaeta_globus_str._Buddy 0
Treponema_azotonutricium_ZAS-9 0
Treponema_primitia_ZAS-2 0
Spirochaeta_africana_DSM_8902 0
Denitrovibrio_acetiphilus_DSM_12809 3
Mesotoga_prima_MesG1.Ag.4.2 0
Candidatus_Solibacter_usitatus_Ellin6076 0
Ilyobacter_polytropus_DSM_2926 0
Nitratifractor_salsuginis_DSM_16511 0
Sulfurospirillum_deleyianum_DSM_6946 0
Sulfurospirillum_barnesii_SES-3 0
Arcobacter_sp._L 0
Arcobacter_nitrofigilis_DSM_7299 0
Arcobacter_butzleri_RM4018 0
uncultured_Sulfuricurvum_sp._RIFRC-1 0
Sulfuricurvum_kujiense_DSM_16994 0
Sulfurimonas_autotrophica_DSM_16294 0
Sulfurimonas_denitrificans_DSM_1251 0
Wolinella_succinogenes_DSM_1740 0
Sulfurovum_sp._NBC37-1 2
Desulfomonile_tiedjei_DSM_6799 1
Desulfatibacillum_alkenivorans_AK-01 0
Desulfococcus_oleovorans_Hxd3 1
Desulfovibrio_piezophilus 1
Desulfovibrio_magneticus_RS-1 2
Desulfovibrio_africanus_str._Walvis_Bay 1
Geobacter_daltonii_FRC-32 1
Geobacter_sp._M21 3
Geobacter_uraniireducens_Rf4 2
Geobacter_lovleyi_SZ 2
Geobacter_bemidjiensis_Bem 3
Geobacter_sulfurreducens_KN400 1
Geobacter_metallireducens_GS-15 1
Anaeromyxobacter_dehalogenans_2CP-1 3
Dechloromonas_aromatica_RCB 1
Azoarcus_sp._BH72 1
Aromatoleum_aromaticum_EbN1 1
Dechlorosoma_suillum_PS 2
Laribacter_hongkongensis_HLHK9 2
Chromobacterium_violaceum_ATCC_12472 0
beta_proteobacterium_CB 0
Methylibium_petroleiphilum_PM1 0
Rubrivivax_gelatinosus_IL144 1
Cupriavidus_metallidurans_CH34 0
Ralstonia_pickettii_12D 0
Polynucleobacter_necessarius_subsp._asymbioticus_QLW-P1DMWA-1 0
Burkholderia_sp._RPE64 0
Burkholderia_thailandensis_E264 0
Burkholderia_ambifaria_AMMD 0
Alicycliphilus_denitrificans_K601 1
Delftia_sp._Cs1-4 0
Delftia_acidovorans_SPH-1 0
Taylorella_asinigenitalis_MCE3 1
Taylorella_equigenitalis_MCE9 1
Thiobacillus_denitrificans_ATCC_25259 1
Magnetococcus_marinus_MC-1 2
Pseudovibrio_sp._FO-BEG1 1
Ruegeria_sp._TM1040 0
Magnetospirillum_magneticum_AMB-1 1
Azospirillum_brasilense_Sp245 1
Haemophilus_somnus_129PT 1
Gallibacterium_anatis_UMN179 1
Pasteurella_multocida_subsp._multocida_str._3480 1
Oceanimonas_sp._GK1 2
Aeromonas_veronii_B565 0
Aeromonas_salmonicida_subsp._salmonicida_A449 0
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 0
Vibrio_fischeri_MJ11 1
Vibrio_sp._Ex25 1
Vibrio_parahaemolyticus_RIMD_2210633 2
Vibrio_furnissii_NCTC_11218 1
Photobacterium_profundum_SS9 1
Psychromonas_ingrahamii_37 0
Ferrimonas_balearica_DSM_9799 2
Shewanella_piezotolerans_WP3 2
Shewanella_loihica_PV-4 2
Shewanella_halifaxensis_HAW-EB4 3
Shewanella_sediminis_HAW-EB3 2
Shewanella_pealeana_ATCC_700345 2
Shewanella_oneidensis_MR-1 2
Shewanella_baltica_OS185 2
Shewanella_sp._MR-4 1
Shewanella_amazonensis_SB2B 2
Shewanella_frigidimarina_NCIMB_400 1
Shewanella_putrefaciens_CN-32 1
Glaciecola_nitratireducens_FR1064 0
Marinobacter_adhaerens_HP15 0
Marinobacter_sp._BSs20148 0
Marinobacter_hydrocarbonoclasticus_ATCC_49840 0
Marinobacter_aquaeolei_VT8 0
Hahella_chejuensis_KCTC_2396 0
Marinomonas_sp._MWYL1 2
Marinomonas_mediterranea_MMB-1 1
Stenotrophomonas_maltophilia_K279a 0
Spiribacter_sp._UAH-SP71 1
Halorhodospira_halophila_SL1 0
Allochromatium_vinosum_DSM_180 0
Thiocystis_violascens_DSM_198 0
Providencia_stuartii_MRSN_2154 1
Proteus_mirabilis_HI4320 1
Edwardsiella_tarda_EIB202 1
Yersinia_enterocolitica_subsp._enterocolitica_8081 1
Serratia_sp._AS12 0
Serratia_plymuthica_AS9 0
Serratia_proteamaculans_568 1
Pantoea_sp._At-9b 0
Pantoea_vagans_C9-1 0
Pantoea_ananatis_LMG_20103 0
Erwinia_billingiae_Eb661 0
Escherichia_blattae_DSM_4481 2
Salmonella_bongori_NCTC_12419 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1
Klebsiella_oxytoca_E718 1
Klebsiella_variicola_At-22 0
Klebsiella_pneumoniae_NTUH-K2044 0
Enterobacter_cloacae_subsp._dissolvens_SDM 0
Citrobacter_koseri_ATCC_BAA-895 0
Pseudomonas_sp._UW4 0
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 0
Pseudomonas_entomophila_L48 0
Pseudomonas_putida_F1 0
Pseudomonas_protegens_Pf-5 0
Pseudomonas_aeruginosa_UCBPP-PA14 0
Pseudomonas_sp._VLB120 0
Psychrobacter_arcticus_273-4 1

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Strains
Genome     Number
Coprococcus_catus_GD/7 0
Nonlabens_dokdonensis_DSW-6 0
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Borrelia_garinii_NMJW1 0
Borrelia_garinii_BgVir 0
Borrelia_afzelii_HLJ01 0
Borrelia_afzelii_PKo 0
Borrelia_burgdorferi_CA382 0
Borrelia_burgdorferi_JD1 0
Borrelia_burgdorferi_N40 0
Borrelia_burgdorferi_ZS7 0
Borrelia_miyamotoi_LB-2001 0
Arcobacter_butzleri_7h1h 0
Arcobacter_butzleri_ED-1 0
Desulfocapsa_sulfexigens_DSM_10523 0
Desulfobacula_toluolica_Tol2 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 2
Geobacter_sp._M18 3
Geobacter_sulfurreducens_PCA 1
Anaeromyxobacter_sp._K 3
Anaeromyxobacter_dehalogenans_2CP-C 2
Ralstonia_pickettii_12J 0
Burkholderia_sp._YI23 0
Burkholderia_pseudomallei_MSHR305 0
Burkholderia_pseudomallei_NCTC_13179 0
Burkholderia_pseudomallei_668 0
Burkholderia_ambifaria_MC40-6 0
Burkholderia_cenocepacia_J2315 0
Alicycliphilus_denitrificans_BC 1
Taylorella_asinigenitalis_14/45 1
Taylorella_equigenitalis_14/56 1
Taylorella_equigenitalis_ATCC_35865 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 0
Bibersteinia_trehalosi_USDA-ARS-USMARC-192 1
Haemophilus_somnus_2336 1
Mannheimia_haemolytica_USMARC_2286 1
Mannheimia_haemolytica_M42548 1
Mannheimia_haemolytica_D174 1
Mannheimia_haemolytica_D171 1
Mannheimia_haemolytica_D153 1
Mannheimia_haemolytica_USDA-ARS-USMARC-183 1
Mannheimia_haemolytica_USDA-ARS-USMARC-185 1
Pasteurella_multocida_subsp._multocida_str._HN06 1
Pasteurella_multocida_subsp._multocida_str._Pm70 1
Aeromonas_hydrophila_ML09-119 1
Vibrio_fischeri_ES114 1
Vibrio_sp._EJY3 1
Vibrio_parahaemolyticus_BB22OP 2
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1
Vibrio_vulnificus_YJ016 1
Shewanella_sp._W3-18-1 1
Shewanella_sp._ANA-3 1
Shewanella_baltica_BA175 1
Shewanella_baltica_OS678 2
Shewanella_baltica_OS117 2
Shewanella_baltica_OS223 1
Shewanella_baltica_OS195 1
Shewanella_baltica_OS155 2
Shewanella_sp._MR-7 1
Shewanella_putrefaciens_200 1
Stenotrophomonas_maltophilia_JV3 0
Stenotrophomonas_maltophilia_R551-3 0
Proteus_mirabilis_BB2000 1
Morganella_morganii_subsp._morganii_KT 1
Edwardsiella_tarda_C07-087 1
Edwardsiella_tarda_FL6-60 1
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 1
Yersinia_enterocolitica_subsp._palearctica_Y11 1
Serratia_sp._AS13 0
Serratia_plymuthica_S13 0
Serratia_plymuthica_4Rx13 0
Serratia_marcescens_FGI94 0
Serratia_marcescens_WW4 1
Serratia_liquefaciens_ATCC_27592 1
Pantoea_ananatis_LMG_5342 0
Pantoea_ananatis_PA13 0
Pantoea_ananatis_AJ13355 0
Salmonella_bongori_N268-08 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 1
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1
Klebsiella_oxytoca_KCTC_1686 1
Klebsiella_pneumoniae_JM45 0
Klebsiella_pneumoniae_CG43 0
Klebsiella_pneumoniae_KCTC_2242 0
Klebsiella_pneumoniae_342 0
Klebsiella_pneumoniae_subsp._pneumoniae_1084 0
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 0
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 0
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 0
Enterobacter_cloacae_SCF1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 0
Pseudomonas_monteilii_SB3101 0
Pseudomonas_monteilii_SB3078 0
Pseudomonas_putida_H8234 0
Pseudomonas_putida_HB3267 0
Pseudomonas_putida_NBRC_14164 0
Pseudomonas_putida_DOT-T1E 0
Pseudomonas_putida_S16 0
Pseudomonas_putida_BIRD-1 0
Pseudomonas_putida_W619 0
Pseudomonas_putida_ND6 0
Pseudomonas_putida_KT2440 0
Pseudomonas_putida_GB-1 0
Pseudomonas_protegens_CHA0 0
Pseudomonas_fluorescens_F113 0
Pseudomonas_fluorescens_R124 0
Pseudomonas_fluorescens_Pf0-1 0
Pseudomonas_aeruginosa_SCV20265 0
Pseudomonas_aeruginosa_MTB-1 0
Pseudomonas_aeruginosa_LES431 0
Pseudomonas_aeruginosa_RP73 0
Pseudomonas_aeruginosa_B136-33 0
Pseudomonas_aeruginosa_PA1R 0
Pseudomonas_aeruginosa_PA1 0
Pseudomonas_aeruginosa_DK2 0
Pseudomonas_aeruginosa_NCGM2.S1 0
Pseudomonas_aeruginosa_M18 0
Pseudomonas_aeruginosa_LESB58 0
Pseudomonas_aeruginosa_PA7 0
Pseudomonas_aeruginosa_PAO1 0
Methanolobus_psychrophilus_R15 1

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 1
TargetDB__(Targets) 4
STRING_v9.0.5_(STRING) 96
Uniprot_2018_03_genome 7116
NCBI_2017_08_genome 11056

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