SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 53850,53300 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

53850 - Periplasmic binding protein-like II
53300 - vWA-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Acaryochloris_marina_MBIC11017 0
Halothece_sp._PCC_7418 0
Microcystis_aeruginosa_NIES-843 0
Gloeobacter_violaceus_PCC_7421 0
Anabaena_variabilis_ATCC_29413 0
Nostoc_sp._PCC_7107 0
Nostoc_sp._PCC_7120 0
Nostoc_sp._PCC_7524 0
Thermobispora_bispora_DSM_43833 1
Nakamurella_multipartita_DSM_44233 0
Catenulispora_acidiphila_DSM_44928 1
Stackebrandtia_nassauensis_DSM_44728 1
Frankia_symbiont_of_Datisca_glomerata 1
Frankia_sp._EAN1pec 0
Frankia_alni_ACN14a 0
Thermobifida_fusca_YX 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 2
Thermomonospora_curvata_DSM_43183 2
Streptosporangium_roseum_DSM_43021 3
Streptomyces_griseus_subsp._griseus_NBRC_13350 1
Streptomyces_bingchenggensis_BCW-1 1
Streptomyces_violaceusniger_Tu_4113 1
Streptomyces_avermitilis_MA-4680 0
Streptomyces_scabiei_87.22 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Actinosynnema_mirum_DSM_43827 2
Saccharopolyspora_erythraea_NRRL_2338 1
Amycolatopsis_mediterranei_U32 2
Kribbella_flavida_DSM_17836 1
Salinispora_arenicola_CNS-205 1
Verrucosispora_maris_AB-18-032 1
Micromonospora_sp._L5 1
Micromonospora_aurantiaca_ATCC_27029 1
Actinoplanes_sp._N902-109 1
Actinoplanes_sp._SE50/110 1
Actinoplanes_missouriensis_431 3
Rhodococcus_jostii_RHA1 0
Rhodococcus_equi_103S 1
Rhodococcus_opacus_B4 0
Rhodococcus_erythropolis_PR4 1
Nocardia_cyriacigeorgica_GUH-2 1
Nocardia_farcinica_IFM_10152 1
Corynebacterium_aurimucosum_ATCC_700975 1
Corynebacterium_efficiens_YS-314 1
Corynebacterium_jeikeium_K411 1
Beutenbergia_cavernae_DSM_12333 0
Intrasporangium_calvum_DSM_43043 2
Arthrobacter_phenanthrenivorans_Sphe3 0
Bifidobacterium_longum_subsp._longum_JDM301 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1
Herpetosiphon_aurantiacus_DSM_785 2
Roseiflexus_sp._RS-1 2
Roseiflexus_castenholzii_DSM_13941 2
Chloroflexus_sp._MS-G 1
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aggregans_DSM_9485 1
Chloroflexus_aurantiacus_J-10-fl 1
Deinococcus_maricopensis_DSM_21211 1
Deinococcus_proteolyticus_MRP 1
Clostridium_clariflavum_DSM_19732 0
Clostridium_thermocellum_ATCC_27405 0
Ethanoligenens_harbinense_YUAN-3 1
Desulfitobacterium_dehalogenans_ATCC_51507 1
Clostridium_phytofermentans_ISDg 1
Clostridium_lentocellum_DSM_5427 0
Coprococcus_sp._ART55/1 0
Butyrivibrio_proteoclasticus_B316 0
Paenibacillus_sp._JDR-2 0
Isosphaera_pallida_ATCC_43644 0
Delftia_sp._Cs1-4 1
Delftia_acidovorans_SPH-1 1
Rhizobium_etli_CIAT_652 1
Bradyrhizobium_sp._ORS_278 1
Thiocystis_violascens_DSM_198 1
Methanosaeta_harundinacea_6Ac 0
Methanosaeta_concilii_GP6 0
Methanosarcina_acetivorans_C2A 0

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Strains
Genome     Number
Cyanobium_gracile_PCC_6307 1
Cyanothece_sp._PCC_7425 0
Cyanobacterium_aponinum_PCC_10605 0
Stanieria_cyanosphaera_PCC_7437 0
Frankia_sp._EuI1c 1
Frankia_sp._CcI3 1
Nocardiopsis_alba_ATCC_BAA-2165 2
Streptomyces_albus_J1074 1
Streptomyces_davawensis_JCM_4913 1
Streptomyces_fulvissimus_DSM_40593 2
Streptomyces_venezuelae_ATCC_10712 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Saccharothrix_espanaensis_DSM_44229 4
Amycolatopsis_mediterranei_RB 2
Amycolatopsis_mediterranei_S699 2
Amycolatopsis_mediterranei_S699 2
Amycolatopsis_orientalis_HCCB10007 3
Actinoplanes_friuliensis_DSM_7358 2
Rhodococcus_pyridinivorans_SB3094 1
Rhodococcus_erythropolis_CCM2595 1
Nocardia_brasiliensis_ATCC_700358 1
Corynebacterium_glutamicum_MB001 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1
Clostridium_thermocellum_DSM_1313 0
Clostridium_pasteurianum_BC1 1
Paenibacillus_sp._Y412MC10 0
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 0
STRING_v9.0.5_(STRING) 33
Uniprot_2018_03_genome 3498
NCBI_2017_08_genome 2019

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