SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 54171,101936,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54171 - DNA-binding domain
101936 - DNA-binding pseudobarrel domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 7
Citrus_clementina_v165 2
Citrus_sinensis_v154   (Sweet orange)   2
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   3
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   2
Arabidopsis_thaliana_10   (Thale cress)   2
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   1
Glycine_max_v109   (Soybean)   1
Cucumis_sativus_v122   (Cucumber)   1
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   3
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   0
Manihot_esculenta_v147   (Cassava)   1
Populus_trichocarpa_v156   (Black cottonwood)   1
Vitis_vinifera_   (Wine grape)   1
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   0
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 1
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   2
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 0
Oryza_nivara_22 0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Panicum_virgatum_v202   (Switchgrass)   2
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   1
Musa_acuminata_22   (Wild Malaysian banana)   5
Amborella_trichopoda_22 0

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   2

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 1
Malus_x_domestica_(Duplicate)   (Apple)   3
Ricinus_communis__(Early_assembly)   (Castor bean)   2
Nicotiana_benthamiana_0.4.4_(Early_draft) 2
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
Uniprot_2018_03_genome 654
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 10
NCBI_2017_08_genome 148

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