SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for 54292,47741,56176,55447,54665,56003 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54292 - 2Fe-2S ferredoxin-like
47741 - CO dehydrogenase ISP C-domain like
56176 - FAD-binding/transporter-associated domain-like
55447 - CO dehydrogenase flavoprotein C-terminal domain-like
54665 - CO dehydrogenase molybdoprotein N-domain-like
56003 - Molybdenum cofactor-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   2
Pan_troglodytes_76_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_76_3.1   (Western gorilla)   2
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   4
Macaca_mulatta_76_1   (Rhesus monkey)   5
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   4
Otolemur_garnettii_76_3   (Small-eared galago)   5
Microcebus_murinus_76_1   (Gray mouse lemur)   2
Rattus_norvegicus_76_5.0   (Norway rat)   3
Mus_musculus_76_38   (House mouse)   5
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   4
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_76_2   (Rabbit)   4
Ochotona_princeps_76   (American pika)   2
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   3
Bos_taurus_76_3.1   (Cattle)   6
Ovis_aries_76_3.1   (Sheep)   4
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   4
Canis_familiaris_76_3.1   (Dog)   5
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   10
Myotis_lucifugus_76_2.0   (Little brown bat)   4
Pteropus_vampyrus_76_1   (Large flying fox)   2
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   2
Loxodonta_africana_76_3   (African savanna elephant)   7
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   4
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   6
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_76_5   (Platypus)   4
Saccoglossus_kowalevskii_v3.0 6
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Meleagris_gallopavo_76_2   (Turkey)   4
Gallus_gallus_76_4   (Chicken)   3
Anas_platyrhynchos_76_1.0   (Mallard)   2
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_76_2.0   (Green anole)   3
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   1
Gadus_morhua_76_1   (Atlantic cod)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2
Takifugu_rubripes_76_4   (Torafugu)   3
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   3
Oryzias_latipes_76_1   (Japanese medaka)   2
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   2
Poecilia_formosa_76   (Amazon molly)   2
Oreochromis_niloticus_76_1.0   (Nile tilapia)   3
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   4
Oikopleura_dioica 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   20
Ciona_intestinalis_76   (Vase tunicate)   4
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Adineta_vaga 11
Crassostrea_gigas_22   (Pacific oyster)   0
Lottia_gigantea_   (Owl limpet)   5
Helobdella_robusta_ 2
Capitella_sp._I_ 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   6
Heliconius_melpomene_   (Postman butterfly)   0
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   4
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   7
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 7
Drosophila_willistoni_1.3 3
Drosophila_pseudoobscura_2.13 6
Drosophila_persimilis_1.3 6
Drosophila_suzukii 2
Drosophila_yakuba_1.3 4
Drosophila_simulans_1.3 3
Drosophila_sechellia_1.3 4
Drosophila_melanogaster_76_5   (Fruit fly)   4
Drosophila_erecta_1.3 4
Drosophila_ananassae_1.3 5
Drosophila_virilis_1.2 5
Drosophila_mojavensis_1.3 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   12
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   11
Anopheles_darlingi_22   (American malaria mosquito)   2
Anopheles_gambiae_49_3j   (African malaria mosquito)   9
Tribolium_castaneum_3.0   (Red flour beetle)   3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   1
Rhodnius_prolixus_22 3
Daphnia_pulex_   (Common water flea)   3
Strigamia_maritima_22 2
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 2
Caenorhabditis_elegans_76_235   (Roundworm)   1
Caenorhabditis_briggsae_2 1
Acropora_digitifera_v1.0 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Amphimedon_queenslandica 4
Trichoplax_adhaerens_ 3
Proterospongia_sp._ATCC_50818_ 0
Sphaeroforma_arctica_JP610_ 1
Mortierella_verticillata_NRRL_6337_ 1
Rhodotorula_graminis_WP1_v1.0 1
Sporobolomyces_roseus_IAM_13481_ 1
Heterobasidion_annosum_ 1
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 1
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 1
Podospora_anserina_ 1
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 1
Chaetomium_globosum_CBS_148.51_ 1
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 1
Glomerella_graminicola_22 1
Fusarium_graminearum_ 1
Nectria_haematococca_mpVI_ 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1
Fusarium_verticillioides_7600_ 1
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 1
Trichoderma_citrinoviride_v1.0 1
Trichoderma_reesei_1.2 1
Trichoderma_virens_Gv29-8_ 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1
Sclerotinia_sclerotiorum_ 1
Blumeria_graminis_22 1
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 1
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Alternaria_brassicicola_ 1
Cochliobolus_lunatus_m118_v2.0 1
Pyrenophora_teres_f._teres_22 1
Pyrenophora_tritici-repentis_ 1
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 1
Dothistroma_septosporum 1
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Paracoccidioides_brasiliensis_Pb18_ 1
Coccidioides_posadasii_RMSCC_3488_ 1
Coccidioides_immitis_RS_ 1
Ajellomyces_dermatitidis_SLH14081_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Microsporum_canis_CBS_113480_ 1
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_verrucosum_HKI_0517_ 1
Arthroderma_benhamiae_CBS_112371_ 1
Trichophyton_tonsurans_CBS_112818_ 1
Trichophyton_rubrum_CBS_118892_ 1
Uncinocarpus_reesii_1704_ 1
Aspergillus_zonatus_v1.0 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1
Penicillium_chrysogenum_v1.0 1
Aspergillus_acidus_v1.0 2
Aspergillus_fumigatus_Af293 1
Aspergillus_brasiliensis_v1.0 2
Aspergillus_nidulans_FGSC_A4_ 2
Aspergillus_sydowii_v1.0 2
Aspergillus_versicolor_v1.0 2
Aspergillus_glaucus 1
Aspergillus_carbonarius_ITEM_5010_ 2
Neosartorya_fischeri_NRRL_181_ 2
Aspergillus_terreus_NIH2624_ 2
Aspergillus_tubingensis_v1.0 2
Aspergillus_wentii_v1.0 1
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_22 2
Aspergillus_niger_ATCC_1015_ 2
Aspergillus_flavus_NRRL3357_ 1
Aspergillus_clavatus_NRRL_1_ 1
Penicillium_marneffei_ATCC_18224_ 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1
Pichia_pastoris_GS115_ 0
Dictyostelium_discoideum 1
Dictyostelium_purpureum_ 1
Selaginella_moellendorffii_ 6
Eucalyptus_grandis_v201   (Rose gum)   3
Theobroma_cacao_B97-61/B2_v1   (Cacao)   4
Gossypium_raimondii_v221 7
Citrus_clementina_v165 4
Citrus_sinensis_v154   (Sweet orange)   7
Thellungiella_halophila_v173 7
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   8
Capsella_rubella_v183 4
Arabidopsis_lyrata_   (Lyrate rockcress)   6
Arabidopsis_thaliana_10   (Thale cress)   8
Carica_papaya_   (Papaya)   3
Medicago_truncatula_   (Barrel medic)   6
Phaseolus_vulgaris_v186   (French bean)   2
Glycine_max_v109   (Soybean)   5
Cucumis_sativus_v122   (Cucumber)   7
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   0
Prunus_persica_v139   (Peach)   2
Linum_usitatissimum_v200   (Flax)   5
Manihot_esculenta_v147   (Cassava)   3
Populus_trichocarpa_v156   (Black cottonwood)   7
Vitis_vinifera_   (Wine grape)   4
Mimulus_guttatus_v140   (Spotted monkey flower)   2
Solanum_lycopersicum_v.2.3   (Tomato)   8
Solanum_tuberosum_   (Potato)   3
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 5
Triticum_urartu_22 3
Triticum_aestivum_22   (Bread wheat)   4
Aegilops_tauschii_22 2
Brachypodium_distachyon_   (Stiff brome)   5
Oryza_barthii_22   (African wild rice)   4
Oryza_meridionalis_22 5
Oryza_glumaepatula_22 4
Oryza_glaberrima   (African rice)   4
Oryza_punctata_22 6
Oryza_nivara_22 5
Oryza_brachyantha_22   (Malo sina)   3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   6
Oryza_sativa_v193   (Rice)   6
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   3
Panicum_virgatum_v202   (Switchgrass)   4
Setaria_italica_v164   (Foxtail millet)   7
Zea_mays_subsp._mays_   (Maize)   5
Zea_mays_v181   (Maize)   4
Sorghum_bicolor_   (Sorghum)   3
Musa_balbisiana   (Balbis banana)   1
Musa_acuminata_22   (Wild Malaysian banana)   2
Amborella_trichopoda_22 2
Physcomitrella_patens 3
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 1
Chlorella_vulgaris_ 1
Volvox_carteri_f._nagariensis_ 0
Bathycoccus_prasinos_ 1
Micromonas_sp._RCC299_ 1
Thecamonas_trahens_ATCC_50062_ 1
Pythium_arrhenomanes_ATCC_12531_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_capsici_ 0
Phaeodactylum_tricornutumCCAP_1055/1 1
Fragilariopsis_cylindrus 0
Perkinsus_marinus_ATCC_50983_ 1
Trichomonas_vaginalis_ 2
Guillardia_theta_CCMP2712_v1.0_ 0
Emiliania_huxleyi_CCMP1516_ 2
Corallococcus_coralloides_DSM_2259 1
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Pantoea_ananatis_LMG_20103 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   3
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   4
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   10
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 1
Coccidioides_posadasii_str._Silveira_ 1
Coccidioides_immitis_RMSCC_2394_ 1
Coccidioides_immitis_H538.4_ 1
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 2
Aspergillus_fumigatus_A1163_ 1
Batrachochytrium_dendrobatidis_JEL423_ 1
Batrachochytrium_dendrobatidis_JAM81_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   4
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   3
Singulisphaera_acidiphila_DSM_18658 1
Myxococcus_stipitatus_DSM_14675 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_69_3.1   (Western gorilla)   2
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   4
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   3
Otolemur_garnettii_69_3   (Small-eared galago)   4
Microcebus_murinus_69_1   (Gray mouse lemur)   2
Rattus_norvegicus_69_3.4   (Norway rat)   2
Mus_musculus_69_38   (House mouse)   5
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   4
Cavia_porcellus_69_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_69_2   (Rabbit)   4
Ochotona_princeps_69   (American pika)   2
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   3
Bos_taurus_69_3.1   (Cattle)   4
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_69_1   (Giant panda)   4
Canis_familiaris_69_3.1   (Dog)   3
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   5
Myotis_lucifugus_69_2.0   (Little brown bat)   4
Pteropus_vampyrus_69_1   (Large flying fox)   2
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   2
Loxodonta_africana_69_3   (African savanna elephant)   4
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   5
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_69_5   (Platypus)   3
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Meleagris_gallopavo_69_2   (Turkey)   2
Gallus_gallus_69_2   (Chicken)   3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_69_2.0   (Green anole)   3
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gadus_morhua_69_1   (Atlantic cod)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   2
Takifugu_rubripes_69_4   (Torafugu)   2
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   2
Oryzias_latipes_69_1   (Japanese medaka)   2
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   2
Oreochromis_niloticus_69_1.0   (Nile tilapia)   2
Danio_rerio_69_9   (Zebrafish)   3
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   3
Drosophila_melanogaster_69_5   (Fruit fly)   3
Caenorhabditis_elegans_69_215   (Roundworm)   1
Arabidopsis_thaliana_10   (Thale cress)   6

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2
Homo_sapiens__(NCBI_version)   (Human)   2
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   5
Lotus_japonicus__(Early_assembly) 2
Malus_x_domestica_(Duplicate)   (Apple)   0
Ricinus_communis__(Early_assembly)   (Castor bean)   3
Nicotiana_benthamiana_0.4.4_(Early_draft) 3
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   6
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   8
Protozoadb_2010_08_(Protozoadb) 4
PDB_chains_(SCOP_1.75)_(PDB) 2
TargetDB__(Targets) 2
Protein_Data_Bank_(all_PDB_sequenc) 52
STRING_v9.0.5_(STRING) 214
NCBI_2017_08_genome 2094
Uniprot_2018_03_genome 43596

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]