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Domain combinations for 54452,48726,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54452 - MHC antigen-recognition domain
48726 - Immunoglobulin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   297
Pan_troglodytes_76_2.1.4   (Chimpanzee)   25
Gorilla_gorilla_76_3.1   (Western gorilla)   37
Pongo_abelii_76_2   (Sumatran orangutan)   25
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   14
Papio_anubis_76   (Olive baboon)   22
Macaca_mulatta_76_1   (Rhesus monkey)   56
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   53
Otolemur_garnettii_76_3   (Small-eared galago)   22
Microcebus_murinus_76_1   (Gray mouse lemur)   11
Rattus_norvegicus_76_5.0   (Norway rat)   40
Mus_musculus_76_38   (House mouse)   33
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   11
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   38
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   9
Cavia_porcellus_76_3   (Domestic guinea pig)   15
Oryctolagus_cuniculus_76_2   (Rabbit)   18
Ochotona_princeps_76   (American pika)   20
Tupaia_belangeri_76   (Northern tree shrew)   14
Sus_scrofa_76_10.2   (Pig)   21
Bos_taurus_76_3.1   (Cattle)   25
Ovis_aries_76_3.1   (Sheep)   29
Vicugna_pacos_76_1   (Alpaca)   5
Tursiops_truncatus_76_1   (Bottlenose dolphin)   7
Mustela_putorius_furo_76_1.0   (Domestic ferret)   14
Ailuropoda_melanoleuca_76_1   (Giant panda)   14
Canis_familiaris_76_3.1   (Dog)   14
Felis_catus_76_6.2   (Domestic cat)   22
Equus_caballus_76_2   (Horse)   42
Myotis_lucifugus_76_2.0   (Little brown bat)   79
Pteropus_vampyrus_76_1   (Large flying fox)   11
Sorex_araneus_76_1   (European shrew)   25
Erinaceus_europaeus_76   (Western European hedgehog)   6
Procavia_capensis_76_1   (Cape rock hyrax)   13
Loxodonta_africana_76_3   (African savanna elephant)   34
Echinops_telfairi_76   (Small Madagascar hedgehog)   10
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   73
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   6
Macropus_eugenii_76_1.0   (Tammar wallaby)   6
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   16
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   20
Ornithorhynchus_anatinus_76_5   (Platypus)   6
Meleagris_gallopavo_76_2   (Turkey)   3
Gallus_gallus_76_4   (Chicken)   22
Anas_platyrhynchos_76_1.0   (Mallard)   4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   4
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   8
Anolis_carolinensis_76_2.0   (Green anole)   12
Xenopus_laevis_   (African clawed frog)   105
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   17
Latimeria_chalumnae_76_1   (Coelacanth)   21
Lepisosteus_oculatus_76   (Spotted gar)   7
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   7
Takifugu_rubripes_76_4   (Torafugu)   20
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   26
Oryzias_latipes_76_1   (Japanese medaka)   18
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   8
Poecilia_formosa_76   (Amazon molly)   25
Oreochromis_niloticus_76_1.0   (Nile tilapia)   43
Astyanax_mexicanus_76   (Mexican tetra)   15
Danio_rerio_76_9   (Zebrafish)   28

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   41

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   115
Pan_troglodytes_69_2.1.4   (Chimpanzee)   22
Gorilla_gorilla_69_3.1   (Western gorilla)   13
Pongo_abelii_69_2   (Sumatran orangutan)   24
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   13
Macaca_mulatta_69_1   (Rhesus monkey)   33
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   30
Otolemur_garnettii_69_3   (Small-eared galago)   22
Microcebus_murinus_69_1   (Gray mouse lemur)   11
Rattus_norvegicus_69_3.4   (Norway rat)   29
Mus_musculus_69_38   (House mouse)   22
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   11
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   37
Cavia_porcellus_69_3   (Domestic guinea pig)   14
Oryctolagus_cuniculus_69_2   (Rabbit)   13
Ochotona_princeps_69   (American pika)   20
Tupaia_belangeri_69   (Northern tree shrew)   14
Sus_scrofa_69_10.2   (Pig)   13
Bos_taurus_69_3.1   (Cattle)   22
Vicugna_pacos_69_1   (Alpaca)   5
Tursiops_truncatus_69_1   (Bottlenose dolphin)   7
Mustela_putorius_furo_69_1.0   (Domestic ferret)   14
Ailuropoda_melanoleuca_69_1   (Giant panda)   14
Canis_familiaris_69_3.1   (Dog)   11
Felis_catus_69   (Domestic cat)   13
Equus_caballus_69_2   (Horse)   37
Myotis_lucifugus_69_2.0   (Little brown bat)   79
Pteropus_vampyrus_69_1   (Large flying fox)   11
Sorex_araneus_69_1   (European shrew)   25
Erinaceus_europaeus_69   (Western European hedgehog)   6
Procavia_capensis_69_1   (Cape rock hyrax)   13
Loxodonta_africana_69_3   (African savanna elephant)   27
Echinops_telfairi_69   (Small Madagascar hedgehog)   10
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   12
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   6
Macropus_eugenii_69_1.0   (Tammar wallaby)   6
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   13
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   17
Ornithorhynchus_anatinus_69_5   (Platypus)   6
Meleagris_gallopavo_69_2   (Turkey)   3
Gallus_gallus_69_2   (Chicken)   11
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   8
Anolis_carolinensis_69_2.0   (Green anole)   12
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   15
Latimeria_chalumnae_69_1   (Coelacanth)   19
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   6
Takifugu_rubripes_69_4   (Torafugu)   8
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   16
Oryzias_latipes_69_1   (Japanese medaka)   13
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   8
Oreochromis_niloticus_69_1.0   (Nile tilapia)   39
Danio_rerio_69_9   (Zebrafish)   24

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   274
Homo_sapiens__(NCBI_version)   (Human)   65
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   24
TargetDB__(Targets) 110
STRING_v9.0.5_(STRING) 484
NCBI_2017_08_genome 5329
Uniprot_2018_03_genome 92010
Protein_Data_Bank_(all_PDB_sequenc) 28
PDB_chains_(SCOP_1.75)_(PDB) 3
UniProt__viral_sequences_(Viral) 59
NCBI_viral_sequences_(Viral) 12

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