SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 54495,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54495 - UBC-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   26
Pan_troglodytes_76_2.1.4   (Chimpanzee)   14
Gorilla_gorilla_76_3.1   (Western gorilla)   19
Pongo_abelii_76_2   (Sumatran orangutan)   13
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   10
Papio_anubis_76   (Olive baboon)   16
Macaca_mulatta_76_1   (Rhesus monkey)   17
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   30
Otolemur_garnettii_76_3   (Small-eared galago)   15
Microcebus_murinus_76_1   (Gray mouse lemur)   13
Rattus_norvegicus_76_5.0   (Norway rat)   12
Mus_musculus_76_38   (House mouse)   29
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   11
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   13
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   34
Cavia_porcellus_76_3   (Domestic guinea pig)   15
Oryctolagus_cuniculus_76_2   (Rabbit)   12
Ochotona_princeps_76   (American pika)   10
Tupaia_belangeri_76   (Northern tree shrew)   14
Sus_scrofa_76_10.2   (Pig)   10
Bos_taurus_76_3.1   (Cattle)   13
Ovis_aries_76_3.1   (Sheep)   12
Vicugna_pacos_76_1   (Alpaca)   10
Tursiops_truncatus_76_1   (Bottlenose dolphin)   13
Mustela_putorius_furo_76_1.0   (Domestic ferret)   13
Ailuropoda_melanoleuca_76_1   (Giant panda)   13
Canis_familiaris_76_3.1   (Dog)   14
Felis_catus_76_6.2   (Domestic cat)   12
Equus_caballus_76_2   (Horse)   10
Myotis_lucifugus_76_2.0   (Little brown bat)   17
Pteropus_vampyrus_76_1   (Large flying fox)   11
Sorex_araneus_76_1   (European shrew)   10
Erinaceus_europaeus_76   (Western European hedgehog)   14
Procavia_capensis_76_1   (Cape rock hyrax)   12
Loxodonta_africana_76_3   (African savanna elephant)   18
Echinops_telfairi_76   (Small Madagascar hedgehog)   8
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   12
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   10
Macropus_eugenii_76_1.0   (Tammar wallaby)   11
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   11
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   13
Ornithorhynchus_anatinus_76_5   (Platypus)   10
Saccoglossus_kowalevskii_v3.0 18
Petromyzon_marinus_76_7.0   (Sea lamprey)   6
Meleagris_gallopavo_76_2   (Turkey)   10
Gallus_gallus_76_4   (Chicken)   12
Anas_platyrhynchos_76_1.0   (Mallard)   10
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   8
Ficedula_albicollis_76_1.0   (Collared flycatcher)   10
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   11
Anolis_carolinensis_76_2.0   (Green anole)   11
Xenopus_laevis_   (African clawed frog)   43
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   17
Latimeria_chalumnae_76_1   (Coelacanth)   17
Lepisosteus_oculatus_76   (Spotted gar)   10
Gadus_morhua_76_1   (Atlantic cod)   8
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   10
Takifugu_rubripes_76_4   (Torafugu)   20
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   12
Oryzias_latipes_76_1   (Japanese medaka)   17
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   10
Poecilia_formosa_76   (Amazon molly)   11
Oreochromis_niloticus_76_1.0   (Nile tilapia)   14
Astyanax_mexicanus_76   (Mexican tetra)   11
Danio_rerio_76_9   (Zebrafish)   25
Oikopleura_dioica 14
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   10
Ciona_intestinalis_76   (Vase tunicate)   7
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   13
Adineta_vaga 34
Octopus_bimaculoides_280 14
Crassostrea_gigas_22   (Pacific oyster)   6
Lottia_gigantea_   (Owl limpet)   12
Helobdella_robusta_ 9
Capitella_sp._I_ 14
Danaus_plexippus_OGS1.0   (Monarch butterfly)   8
Heliconius_melpomene_   (Postman butterfly)   7
Bombyx_mori_   (Domestic silkworm)   3
Nasonia_vitripennis_   (Jewel wasp)   7
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   11
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   9
Linepithema_humile_v1.1   (Argentine ant)   6
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   5
Solenopsis_invicta_v.2.2.3   (Red fire ant)   7
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   7
Atta_cephalotes_v1.1 7
Camponotus_floridanus_v3.3   (Florida carpenter ant)   7
Lucilia_cuprina   (Australian sheep blowfly)   8
Drosophila_grimshawi_1.3 8
Drosophila_willistoni_1.3 8
Drosophila_pseudoobscura_2.13 14
Drosophila_persimilis_1.3 12
Drosophila_suzukii 7
Drosophila_yakuba_1.3 10
Drosophila_simulans_1.3 8
Drosophila_sechellia_1.3 10
Drosophila_melanogaster_76_5   (Fruit fly)   13
Drosophila_erecta_1.3 9
Drosophila_ananassae_1.3 10
Drosophila_virilis_1.2 9
Drosophila_mojavensis_1.3 8
Megaselia_scalaris_22 3
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   6
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   7
Anopheles_darlingi_22   (American malaria mosquito)   5
Anopheles_gambiae_49_3j   (African malaria mosquito)   6
Tribolium_castaneum_3.0   (Red flour beetle)   8
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   8
Acyrthosiphon_pisum_   (Pea aphid)   9
Rhodnius_prolixus_22 9
Daphnia_pulex_   (Common water flea)   10
Strigamia_maritima_22 7
Sarcoptes_scabiei 6
Tetranychus_urticae_   (Two-spotted spider mite)   8
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   7
Pristionchus_pacificus_ 6
Meloidogyne_incognita_   (Southern root-knot nematode)   7
Meloidogyne_hapla_ 9
Onchocerca_volvulus_22 6
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   9
Caenorhabditis_japonica_ 4
Caenorhabditis_brenneri_ 11
Caenorhabditis_remanei_ 11
Caenorhabditis_elegans_76_235   (Roundworm)   14
Caenorhabditis_briggsae_2 8
Trichinella_spiralis_22 2
Hymenolepis_microstoma_ 13
Echinococcus_multilocularis_ 17
Echinococcus_granulosus_ 17
Taenia_solium_   (Pork tapeworm)   17
Schistosoma_mansoni_ 9
Mnemiopsis_leidyi   (Sea walnut)   10
Thelohanellus_kitauei 2
Acropora_digitifera_v1.0 12
Nematostella_vectensis_1.0   (Starlet sea anemone)   12
Hydra_vulgaris 6
Amphimedon_queenslandica 13
Trichoplax_adhaerens_ 8
Proterospongia_sp._ATCC_50818_ 12
Monosiga_brevicollis_ 7
Sphaeroforma_arctica_JP610_ 2
Capsaspora_owczarzaki_ATCC_30864_ 8
Conidiobolus_coronatus_NRRL28638_v1.0 2
Mortierella_verticillata_NRRL_6337_ 5
Phycomyces_blakesleeanus_ 6
Rhizopus_oryzae_RA_99-880_ 5
Mucor_circinelloides_ 3
Rhizomucor_miehei_CAU432_ 6
Malassezia_globosa_CBS_7966_ 10
Sporisorium_reilianum_22 5
Ustilago_maydis_ 6
Mixia_osmundae_IAM_14324_v1.0 5
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 5
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 5
Melampsora_laricis-populina_ 4
Rhodotorula_graminis_WP1_v1.0 4
Sporobolomyces_roseus_IAM_13481_ 1
Microbotryum_violaceum_22 6
Wallemia_sebi_v1.0 5
Sphaerobolus_stellatus_v1.0 6
Piloderma_croceum_F_1598_v1.0 6
Serpula_lacrymans_var._lacrymans_S7.9_ 4
Coniophora_puteana 6
Hydnomerulius_pinastri_v2.0 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 5
Pisolithus_microcarpus_441_v1.0 6
Pisolithus_tinctorius_Marx_270_v1.0 5
Scleroderma_citrinum_Foug_A_v1.0 4
Coprinopsis_cinerea_okayama7_130_v3 6
Pleurotus_ostreatus_   (Oyster mushroom)   2
Amanita_thiersii_Skay4041_v1.0 8
Amanita_muscaria_Koide_v1.0   (Fly agaric)   6
Galerina_marginata_v1.0 8
Hebeloma_cylindrosporum_h7_v2.0 7
Laccaria_bicolor_S238N-H82_ 3
Agaricus_bisporus_var._bisporus_ 5
Schizophyllum_commune_ 6
Stereum_hirsutum_FP-91666_SS1__v1.0 6
Heterobasidion_annosum_ 4
Gloeophyllum_trabeumv1.0 7
Punctularia_strigosozonata_v1.0 4
Sebacina_vermifera_MAFF_305830_v1.0 5
Fomitiporia_mediterranea_v1.0 4
Tulasnella_calospora_AL13/4D_v1.0 6
Postia_placenta_ 7
Wolfiporia_cocos_MD-104_SS10__v1.0 4
Fomitopsis_pinicolav1.0 5
Fomitopsis_pinicola_FP-58527_SS1_v3.0 4
Phanerochaete_chrysosporium_RP-78_2.1 2
Dichomitus_squalens 5
Trametes_versicolor_v1.0 3
Tremella_mesenterica_   (Witches' butter)   6
Daldinia_eschscholzii_EC12_v1.0 6
Apiospora_montagnei_NRRL_25634_v1.0 7
Magnaporthe_poae_ATCC_64411_22 4
Magnaporthe_grisea_70-15_ 6
Podospora_anserina_ 4
Sporotrichum_thermophile_ATCC_42464_ 6
Thielavia_terrestris_NRRL_8126_ 6
Chaetomium_globosum_CBS_148.51_ 7
Neurospora_tetrasperma_ 6
Neurospora_discreta_FGSC_8579_ 5
Neurospora_crassa_OR74A_ 6
Cryphonectria_parasitica_   (Chestnut blight fungus)   6
Verticillium_albo-atrum_VaMs.102_ 4
Verticillium_dahliae_VdLs.17_ 7
Acremonium_alcalophilumv_1.0 4
Glomerella_graminicola_22 6
Fusarium_graminearum_ 6
Nectria_haematococca_mpVI_ 6
Fusarium_oxysporum_f._sp._lycopersici_4286_ 6
Fusarium_verticillioides_7600_ 5
Trichoderma_asperellum_CBS_433.97_v1.0 5
Trichoderma_atroviride_ 5
Trichoderma_citrinoviride_v1.0 6
Trichoderma_reesei_1.2 5
Trichoderma_virens_Gv29-8_ 5
Trichoderma_longibrachiatum_ATCC_18648_v1.0 4
Trichoderma_harzianum_CBS_226.95_v1.0 5
Amorphotheca_resinae_v1.0   (Creosote fungus)   5
Botrytis_cinerea_B05.10_ 5
Sclerotinia_sclerotiorum_ 5
Blumeria_graminis_22 6
Didymella_exigua_CBS_183.55_v1.0 6
Leptosphaeria_maculans_22 5
Setosphaeria_turcica_v1.0 7
Cochliobolus_miyabeanus_ATCC_44560_v1.0 7
Cochliobolus_victoriae_FI3_v1.0 8
Cochliobolus_carbonum_26-R-13_v1.0 8
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   6
Alternaria_brassicicola_ 5
Cochliobolus_lunatus_m118_v2.0 6
Pyrenophora_teres_f._teres_22 6
Pyrenophora_tritici-repentis_ 6
Stagonospora_nodorum_ 9
Mycosphaerella_graminicola_IPO323_ 7
Zasmidium_cellare_ATCC_36951_v1.0 7
Dothistroma_septosporum 7
Septoria_musiva_v1.0 5
Mycosphaerella_fijiensis_CIRAD86_ 6
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 8
Paracoccidioides_brasiliensis_Pb18_ 6
Coccidioides_posadasii_RMSCC_3488_ 6
Coccidioides_immitis_RS_ 7
Ajellomyces_dermatitidis_SLH14081_ 6
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 4
Microsporum_canis_CBS_113480_ 6
Trichophyton_equinum_CBS_127.97_ 5
Trichophyton_verrucosum_HKI_0517_ 6
Arthroderma_benhamiae_CBS_112371_ 5
Trichophyton_tonsurans_CBS_112818_ 6
Trichophyton_rubrum_CBS_118892_ 6
Uncinocarpus_reesii_1704_ 7
Aspergillus_zonatus_v1.0 6
Penicillium_chrysogenum_Wisconsin_54-1255_ 7
Penicillium_chrysogenum_v1.0 7
Aspergillus_acidus_v1.0 7
Aspergillus_fumigatus_Af293 5
Aspergillus_brasiliensis_v1.0 6
Aspergillus_nidulans_FGSC_A4_ 7
Aspergillus_sydowii_v1.0 8
Aspergillus_versicolor_v1.0 8
Aspergillus_glaucus 7
Aspergillus_carbonarius_ITEM_5010_ 6
Neosartorya_fischeri_NRRL_181_ 7
Aspergillus_terreus_NIH2624_ 8
Aspergillus_tubingensis_v1.0 7
Aspergillus_wentii_v1.0 8
Aspergillus_oryzae_RIB40_ 4
Aspergillus_niger_22 6
Aspergillus_niger_ATCC_1015_ 5
Aspergillus_flavus_NRRL3357_ 6
Aspergillus_clavatus_NRRL_1_ 7
Penicillium_marneffei_ATCC_18224_ 7
Tuber_melanosporum_Mel28_22 4
Tuber_melanosporum_Vittad_   (Perigord truffle)   4
Hansenula_polymorpha_v2.0 4
Dekkera_bruxellensis_CBS_2499_v2.0 7
Pichia_membranifaciensv1.0 6
Candida_tanzawaensis_NRRL_Y-17324__v1.0 5
Candida_dubliniensis_CD36_ 6
Candida_tropicalis_MYA-3404_ 5
Candida_parapsilosis_ 4
Candida_albicans_SC5314 6
Lodderomyces_elongisporus_NRRL_YB-4239_ 6
Babjeviella_inositovora_NRRL_Y-12698_v1.0 5
Pichia_stipitis_CBS_6054_ 5
Candida_guilliermondii_ATCC_6260_ 5
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5
Debaromyces_hansenii 7
Wickerhamomyces_anomalus 5
Pichia_pastoris_GS115_ 5
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 4
Yarrowia_lipolytica_CLIB122 5
Candida_lusitaniae_ATCC_42720_ 5
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 4
Vanderwaltozyma_polyspora_DSM_70294_ 4
Candida_glabrata_CBS138 4
Kluyveromyces_thermotolerans_CBS_6340 4
Lachancea_kluyveri_ 5
Kluyveromyces_waltii 4
Ashbya_gossypii_ATCC_10895_ 4
Zygosaccharomyces_rouxii_ 4
Saccharomyces_mikatae_MIT 5
Saccharomyces_paradoxus_MIT 4
Saccharomyces_cerevisiae_76   (Baker's yeast)   4
Saccharomyces_bayanus_MIT 3
Kluyveromyces_lactis 5
Schizosaccharomyces_cryophilus_OY26_22 2
Schizosaccharomyces_octosporus_yFS286_ 2
Schizosaccharomyces_japonicus_yFS275_ 3
Schizosaccharomyces_pombe   (Fission yeast)   3
Catenaria_anguillulae_PL171_v1.0 5
Allomyces_macrogynus_ATCC_38327_ 10
Spizellomyces_punctatus_DAOM_BR117_ 9
Dictyostelium_discoideum 9
Dictyostelium_purpureum_ 5
Entamoeba_dispar_1.2 9
Entamoeba_invadens_1.2 6
Entamoeba_histolytica_1 8
Selaginella_moellendorffii_ 11
Pinus_taeda   (Loblolly pine)   13
Picea_abies   (Norway spruce)   5
Eucalyptus_grandis_v201   (Rose gum)   6
Theobroma_cacao_B97-61/B2_v1   (Cacao)   7
Gossypium_raimondii_v221 21
Citrus_clementina_v165 8
Citrus_sinensis_v154   (Sweet orange)   12
Thellungiella_halophila_v173 12
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   13
Capsella_rubella_v183 8
Arabidopsis_lyrata_   (Lyrate rockcress)   9
Arabidopsis_thaliana_10   (Thale cress)   11
Carica_papaya_   (Papaya)   6
Medicago_truncatula_   (Barrel medic)   15
Phaseolus_vulgaris_v186   (French bean)   8
Glycine_max_v109   (Soybean)   21
Cucumis_sativus_v122   (Cucumber)   12
Fragaria_vesca_   (Wild strawberry)   15
Malus_domestica_v196   (Apple)   18
Prunus_persica_v139   (Peach)   14
Linum_usitatissimum_v200   (Flax)   15
Manihot_esculenta_v147   (Cassava)   8
Populus_trichocarpa_v156   (Black cottonwood)   10
Vitis_vinifera_   (Wine grape)   3
Mimulus_guttatus_v140   (Spotted monkey flower)   6
Solanum_lycopersicum_v.2.3   (Tomato)   6
Solanum_tuberosum_   (Potato)   12
Actinidia_chinensis_Hongyang_ 6
Aquilegia_coerulea_v195 10
Triticum_urartu_22 8
Triticum_aestivum_22   (Bread wheat)   28
Aegilops_tauschii_22 11
Brachypodium_distachyon_   (Stiff brome)   9
Oryza_barthii_22   (African wild rice)   7
Oryza_meridionalis_22 6
Oryza_glumaepatula_22 9
Oryza_glaberrima   (African rice)   6
Oryza_punctata_22 12
Oryza_nivara_22 10
Oryza_brachyantha_22   (Malo sina)   7
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   10
Oryza_sativa_v193   (Rice)   10
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   14
Panicum_virgatum_v202   (Switchgrass)   23
Setaria_italica_v164   (Foxtail millet)   8
Zea_mays_subsp._mays_   (Maize)   21
Zea_mays_v181   (Maize)   20
Sorghum_bicolor_   (Sorghum)   7
Musa_balbisiana   (Balbis banana)   13
Musa_acuminata_22   (Wild Malaysian banana)   6
Amborella_trichopoda_22 6
Physcomitrella_patens 7
Coccomyxa_subellipsoidea_sp._C-169_v2 8
Asterochloris_sp._Cgr/DA1pho_v1.0 7
Chlorella_variabilis_sp._NC64A_ 3
Chlorella_vulgaris_ 6
Volvox_carteri_f._nagariensis_ 5
Volvox_carteri_v199 5
Chlamydomonas_reinhardtii_4.0 8
Ostreococcus_sp._RCC809_ 4
Ostreococcus_lucimarinus_CCE9901_ 2
Ostreococcus_tauri_ 4
Bathycoccus_prasinos_ 2
Micromonas_sp._RCC299_ 2
Micromonas_pusilla_CCMP1545_v3.0 4
Cyanidioschyzon_merolae_strain_10D_22 5
Cyanidioschyzon_merolae 5
Porphyridium_purpureum_02_2012 5
Thecamonas_trahens_ATCC_50062_ 8
Bigelowiella_natans_CCMP2755_22 13
Giardia_lamblia_2.3 3
Cyanophora_paradoxa_ 3
Leishmania_mexicana_2.4 6
Leishmania_major_strain_Friedlin_ 6
Leishmania_infantum_JPCM5_2.4 6
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 8
Trypanosoma_vivax_ 6
Trypanosoma_cruzi_strain_CL_Brener 10
Trypanosoma_congolense_2.4 6
Trypanosoma_brucei_gambiense_v4.1 5
Trypanosoma_brucei_TREU927_v4.1 6
Ectocarpus_siliculosus 10
Aureococcus_anophagefferens_ 2
Albugo_laibachii_22 7
Pythium_iwayamai_DAOM_BR242034_22 6
Pythium_arrhenomanes_ATCC_12531_22 4
Pythium_ultimum_v1.7-2 8
Pythium_aphanidermatum_DAOM_BR444_22 5
Pythium_irregulare_DAOM_BR486_22 6
Pythium_vexans_DAOM_BR484_22 8
Phytophthora_ramorum_1.1   (Sudden oak death agent)   6
Phytophthora_sojae_1.1 5
Phytophthora_infestans_T30-4_ 6
Phytophthora_capsici_ 7
Hyaloperonospora_arabidopsidis_22 7
Phaeodactylum_tricornutumCCAP_1055/1 3
Fragilariopsis_cylindrus 9
Thalassiosira_pseudonana_CCMP1335 4
Perkinsus_marinus_ATCC_50983_ 10
Paramecium_tetraurelia_ 24
Tetrahymena_thermophila_SB210_1_ 10
Ichthyophthirius_multifiliis_strain_G5_ 6
Cryptosporidium_hominis 3
Cryptosporidium_muris 3
Cryptosporidium_parvum_Iowa_II 2
Neospora_caninum 5
Toxoplasma_gondii_VEG 5
Toxoplasma_gondii_ME49 5
Toxoplasma_gondii_GT1 5
Babesia_bovis_T2Bo_ 4
Theileria_parva__ 2
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 1
Plasmodium_vivax_SaI-1_7.0 1
Plasmodium_knowlesi_strain_H_ 1
Plasmodium_yoelii_ssp._yoelii_1_ 0
Plasmodium_chabaudi_ 1
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 13
Naegleria_gruberi_ 5
Trichomonas_vaginalis_ 6
Guillardia_theta_CCMP2712_v1.0_ 10
Emiliania_huxleyi_CCMP1516_ 19
Gloeocapsa_sp._PCC_7428 0
Rivularia_sp._PCC_7116 0
Frankia_alni_ACN14a 1
Streptomyces_scabiei_87.22 0
Arthrobacter_sp._FB24 0
Runella_slithyformis_DSM_19594 0
Isosphaera_pallida_ATCC_43644 1
Pirellula_staleyi_DSM_6068 2
Turneriella_parva_DSM_21527 0
Syntrophus_aciditrophicus_SB 0
Desulfotalea_psychrophila_LSv54 0
Desulfobulbus_propionicus_DSM_2032 0
Desulfomicrobium_baculatum_DSM_4028 0
Pusillimonas_sp._T7-7 0
Roseobacter_denitrificans_OCh_114 0
Parvibaculum_lavamentivorans_DS-1 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   32
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   11
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   6
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   7
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   10
Cryptococcus_neoformans_var._grubii_H99_ 8
Cryptococcus_neoformans_B-3501A_ 7
Cryptococcus_neoformans_JEC21_ 7
Paracoccidioides_brasiliensis_Pb01_ 5
Paracoccidioides_brasiliensis_Pb03_ 4
Coccidioides_posadasii_str._Silveira_ 6
Coccidioides_immitis_RMSCC_3703_ 6
Coccidioides_immitis_RMSCC_2394_ 5
Coccidioides_immitis_H538.4_ 6
Ajellomyces_dermatitidis_ER-3_ 6
Histoplasma_capsulatum_H143 5
Histoplasma_capsulatum_H88 6
Histoplasma_capsulatum_G186AR 6
Aspergillus_fumigatus_A1163_ 7
Candida_albicans_WO-1_ 6
Saccharomyces_cerevisiae_UC5 3
Saccharomyces_cerevisiae_PW5 4
Saccharomyces_cerevisiae_FL100 3
Saccharomyces_cerevisiae_CLIB324 4
Saccharomyces_cerevisiae_CBS7960 3
Saccharomyces_cerevisiae_YJM269 4
Saccharomyces_cerevisiae_T7 4
Saccharomyces_cerevisiae_FostersB 5
Saccharomyces_cerevisiae_FostersO 3
Saccharomyces_cerevisiae_VL3 4
Saccharomyces_cerevisiae_Vin13 3
Saccharomyces_cerevisiae_LalvinQA23 4
Saccharomyces_cerevisiae_AWRI796 4
Saccharomyces_cerevisiae_Sigma1278b 4
Saccharomyces_cerevisiae_W303 4
Saccharomyces_cerevisiae_JAY291 4
Saccharomyces_cerevisiae_AWRI1631 3
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_CLIB215 4
Saccharomyces_cerevisiae_Y10 2
Saccharomyces_cerevisiae_YJM789_ 4
Saccharomyces_cerevisiae_YJM789 4
Saccharomyces_cerevisiae_RM11-1a 4
Saccharomyces_cerevisiae_RM11-1a_ 4
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4
Schizosaccharomyces_pombe_972h-_ 3
Batrachochytrium_dendrobatidis_JEL423_ 6
Batrachochytrium_dendrobatidis_JAM81_ 4
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   6
Hordeum_vulgare_22   (Domesticated barley)   12
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   11
Trypanosoma_brucei_Lister_427_v4.1 6
Neospora_caninum_Nc-Liverpool_6.2 5
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 0
Enterococcus_faecium_Aus0085 0
Singulisphaera_acidiphila_DSM_18658 1
Desulfocapsa_sulfexigens_DSM_10523 0
Burkholderia_cenocepacia_MC0-3 0
Octadecabacter_antarcticus_307 0
Rhizobium_etli_CFN_42 0
Pseudomonas_stutzeri_DSM_10701 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   12
Pan_troglodytes_69_2.1.4   (Chimpanzee)   12
Gorilla_gorilla_69_3.1   (Western gorilla)   14
Pongo_abelii_69_2   (Sumatran orangutan)   13
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   11
Macaca_mulatta_69_1   (Rhesus monkey)   13
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   14
Otolemur_garnettii_69_3   (Small-eared galago)   15
Microcebus_murinus_69_1   (Gray mouse lemur)   13
Rattus_norvegicus_69_3.4   (Norway rat)   15
Mus_musculus_69_38   (House mouse)   12
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   11
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   13
Cavia_porcellus_69_3   (Domestic guinea pig)   15
Oryctolagus_cuniculus_69_2   (Rabbit)   13
Ochotona_princeps_69   (American pika)   10
Tupaia_belangeri_69   (Northern tree shrew)   14
Sus_scrofa_69_10.2   (Pig)   10
Bos_taurus_69_3.1   (Cattle)   12
Vicugna_pacos_69_1   (Alpaca)   10
Tursiops_truncatus_69_1   (Bottlenose dolphin)   13
Mustela_putorius_furo_69_1.0   (Domestic ferret)   13
Ailuropoda_melanoleuca_69_1   (Giant panda)   13
Canis_familiaris_69_3.1   (Dog)   12
Felis_catus_69   (Domestic cat)   12
Equus_caballus_69_2   (Horse)   10
Myotis_lucifugus_69_2.0   (Little brown bat)   17
Pteropus_vampyrus_69_1   (Large flying fox)   11
Sorex_araneus_69_1   (European shrew)   10
Erinaceus_europaeus_69   (Western European hedgehog)   14
Procavia_capensis_69_1   (Cape rock hyrax)   12
Loxodonta_africana_69_3   (African savanna elephant)   15
Echinops_telfairi_69   (Small Madagascar hedgehog)   8
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   9
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   10
Macropus_eugenii_69_1.0   (Tammar wallaby)   11
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   10
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   13
Ornithorhynchus_anatinus_69_5   (Platypus)   9
Petromyzon_marinus_69_7.0   (Sea lamprey)   6
Meleagris_gallopavo_69_2   (Turkey)   10
Gallus_gallus_69_2   (Chicken)   10
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   8
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   10
Anolis_carolinensis_69_2.0   (Green anole)   9
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   12
Latimeria_chalumnae_69_1   (Coelacanth)   14
Gadus_morhua_69_1   (Atlantic cod)   8
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   10
Takifugu_rubripes_69_4   (Torafugu)   9
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   9
Oryzias_latipes_69_1   (Japanese medaka)   11
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   10
Oreochromis_niloticus_69_1.0   (Nile tilapia)   11
Danio_rerio_69_9   (Zebrafish)   14
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   10
Ciona_intestinalis_69   (Vase tunicate)   7
Drosophila_melanogaster_69_5   (Fruit fly)   8
Caenorhabditis_elegans_69_215   (Roundworm)   9
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4
Arabidopsis_thaliana_10   (Thale cress)   7

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   32
Homo_sapiens__(NCBI_version)   (Human)   17
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   13
Heliconius_numata__(Incomplete) 6
Loa_loa_v3.3_(Request)   (Eye worm)   8
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   8
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   6
Moniliophthora_perniciosa_FA553__(Genome_survey) 2
Encephalitozoon_intestinalis__(endoparasite) 1
Encephalitozoon_cuniculi_(endoparasite) 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2
Lotus_japonicus__(Early_assembly) 13
Malus_x_domestica_(Duplicate)   (Apple)   18
Ricinus_communis__(Early_assembly)   (Castor bean)   7
Nicotiana_benthamiana_0.4.4_(Early_draft) 14
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   6
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   6
Phoenix_dactylifera__(Early_draft)   (Date palm)   7
NCBI_plasmid_sequences_(Plasmids) 0
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1
NCBI_viral_sequences_(Viral) 8
Protein_Data_Bank_(all_PDB_sequenc) 3
UniProt__viral_sequences_(Viral) 9
TargetDB__(Targets) 52
Protozoadb_2010_08_(Protozoadb) 133
Core_Eukaryotic_Genes_458_(CEGMA) 8
STRING_v9.0.5_(STRING) 905
NCBI_2017_08_genome 8666
Uniprot_2018_03_genome 32391

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