SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 54928,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54928 - RNA-binding domain, RBD

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   243
Pan_troglodytes_76_2.1.4   (Chimpanzee)   48
Gorilla_gorilla_76_3.1   (Western gorilla)   64
Pongo_abelii_76_2   (Sumatran orangutan)   48
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   38
Papio_anubis_76   (Olive baboon)   37
Macaca_mulatta_76_1   (Rhesus monkey)   81
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   109
Otolemur_garnettii_76_3   (Small-eared galago)   47
Microcebus_murinus_76_1   (Gray mouse lemur)   36
Rattus_norvegicus_76_5.0   (Norway rat)   49
Mus_musculus_76_38   (House mouse)   126
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   30
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   39
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   65
Cavia_porcellus_76_3   (Domestic guinea pig)   40
Oryctolagus_cuniculus_76_2   (Rabbit)   45
Ochotona_princeps_76   (American pika)   31
Tupaia_belangeri_76   (Northern tree shrew)   39
Sus_scrofa_76_10.2   (Pig)   60
Bos_taurus_76_3.1   (Cattle)   43
Ovis_aries_76_3.1   (Sheep)   50
Vicugna_pacos_76_1   (Alpaca)   30
Tursiops_truncatus_76_1   (Bottlenose dolphin)   31
Mustela_putorius_furo_76_1.0   (Domestic ferret)   41
Ailuropoda_melanoleuca_76_1   (Giant panda)   35
Canis_familiaris_76_3.1   (Dog)   44
Felis_catus_76_6.2   (Domestic cat)   35
Equus_caballus_76_2   (Horse)   35
Myotis_lucifugus_76_2.0   (Little brown bat)   47
Pteropus_vampyrus_76_1   (Large flying fox)   31
Sorex_araneus_76_1   (European shrew)   29
Erinaceus_europaeus_76   (Western European hedgehog)   24
Procavia_capensis_76_1   (Cape rock hyrax)   26
Loxodonta_africana_76_3   (African savanna elephant)   55
Echinops_telfairi_76   (Small Madagascar hedgehog)   37
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   68
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   30
Macropus_eugenii_76_1.0   (Tammar wallaby)   30
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   40
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   41
Ornithorhynchus_anatinus_76_5   (Platypus)   43
Saccoglossus_kowalevskii_v3.0 65
Petromyzon_marinus_76_7.0   (Sea lamprey)   26
Meleagris_gallopavo_76_2   (Turkey)   47
Gallus_gallus_76_4   (Chicken)   32
Anas_platyrhynchos_76_1.0   (Mallard)   36
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   33
Ficedula_albicollis_76_1.0   (Collared flycatcher)   32
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   37
Anolis_carolinensis_76_2.0   (Green anole)   31
Xenopus_laevis_   (African clawed frog)   91
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   45
Latimeria_chalumnae_76_1   (Coelacanth)   38
Lepisosteus_oculatus_76   (Spotted gar)   40
Gadus_morhua_76_1   (Atlantic cod)   56
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   42
Takifugu_rubripes_76_4   (Torafugu)   95
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   61
Oryzias_latipes_76_1   (Japanese medaka)   55
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   44
Poecilia_formosa_76   (Amazon molly)   35
Oreochromis_niloticus_76_1.0   (Nile tilapia)   48
Astyanax_mexicanus_76   (Mexican tetra)   44
Danio_rerio_76_9   (Zebrafish)   113
Oikopleura_dioica 35
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   36
Ciona_intestinalis_76   (Vase tunicate)   28
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   37
Adineta_vaga 90
Octopus_bimaculoides_280 33
Crassostrea_gigas_22   (Pacific oyster)   21
Lottia_gigantea_   (Owl limpet)   27
Helobdella_robusta_ 23
Capitella_sp._I_ 34
Danaus_plexippus_OGS1.0   (Monarch butterfly)   22
Heliconius_melpomene_   (Postman butterfly)   26
Bombyx_mori_   (Domestic silkworm)   25
Nasonia_vitripennis_   (Jewel wasp)   19
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   53
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   20
Linepithema_humile_v1.1   (Argentine ant)   21
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   20
Solenopsis_invicta_v.2.2.3   (Red fire ant)   16
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   16
Atta_cephalotes_v1.1 20
Camponotus_floridanus_v3.3   (Florida carpenter ant)   23
Lucilia_cuprina   (Australian sheep blowfly)   21
Drosophila_grimshawi_1.3 21
Drosophila_willistoni_1.3 23
Drosophila_pseudoobscura_2.13 21
Drosophila_persimilis_1.3 17
Drosophila_suzukii 24
Drosophila_yakuba_1.3 21
Drosophila_simulans_1.3 26
Drosophila_sechellia_1.3 29
Drosophila_melanogaster_76_5   (Fruit fly)   66
Drosophila_erecta_1.3 23
Drosophila_ananassae_1.3 21
Drosophila_virilis_1.2 23
Drosophila_mojavensis_1.3 23
Megaselia_scalaris_22 9
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   23
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   24
Anopheles_darlingi_22   (American malaria mosquito)   10
Anopheles_gambiae_49_3j   (African malaria mosquito)   22
Tribolium_castaneum_3.0   (Red flour beetle)   20
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   15
Acyrthosiphon_pisum_   (Pea aphid)   21
Rhodnius_prolixus_22 16
Daphnia_pulex_   (Common water flea)   25
Strigamia_maritima_22 35
Sarcoptes_scabiei 10
Tetranychus_urticae_   (Two-spotted spider mite)   23
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   26
Pristionchus_pacificus_ 28
Meloidogyne_incognita_   (Southern root-knot nematode)   54
Meloidogyne_hapla_ 24
Onchocerca_volvulus_22 16
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   30
Caenorhabditis_japonica_ 23
Caenorhabditis_brenneri_ 32
Caenorhabditis_remanei_ 36
Caenorhabditis_elegans_76_235   (Roundworm)   37
Caenorhabditis_briggsae_2 19
Trichinella_spiralis_22 23
Hymenolepis_microstoma_ 21
Echinococcus_multilocularis_ 20
Echinococcus_granulosus_ 21
Taenia_solium_   (Pork tapeworm)   24
Schistosoma_mansoni_ 33
Mnemiopsis_leidyi   (Sea walnut)   29
Thelohanellus_kitauei 15
Acropora_digitifera_v1.0 22
Nematostella_vectensis_1.0   (Starlet sea anemone)   33
Hydra_vulgaris 33
Amphimedon_queenslandica 28
Trichoplax_adhaerens_ 16
Proterospongia_sp._ATCC_50818_ 10
Monosiga_brevicollis_ 9
Sphaeroforma_arctica_JP610_ 16
Capsaspora_owczarzaki_ATCC_30864_ 10
Conidiobolus_coronatus_NRRL28638_v1.0 12
Mortierella_verticillata_NRRL_6337_ 23
Phycomyces_blakesleeanus_ 13
Rhizopus_oryzae_RA_99-880_ 18
Mucor_circinelloides_ 18
Rhizomucor_miehei_CAU432_ 19
Malassezia_globosa_CBS_7966_ 22
Sporisorium_reilianum_22 7
Ustilago_maydis_ 4
Mixia_osmundae_IAM_14324_v1.0 12
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 14
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 19
Melampsora_laricis-populina_ 15
Rhodotorula_graminis_WP1_v1.0 12
Sporobolomyces_roseus_IAM_13481_ 9
Microbotryum_violaceum_22 9
Wallemia_sebi_v1.0 14
Sphaerobolus_stellatus_v1.0 27
Piloderma_croceum_F_1598_v1.0 17
Serpula_lacrymans_var._lacrymans_S7.9_ 15
Coniophora_puteana 16
Hydnomerulius_pinastri_v2.0 18
Paxillus_rubicundulus_Ve08.2h10_v1.0 17
Pisolithus_microcarpus_441_v1.0 20
Pisolithus_tinctorius_Marx_270_v1.0 18
Scleroderma_citrinum_Foug_A_v1.0 18
Coprinopsis_cinerea_okayama7_130_v3 16
Pleurotus_ostreatus_   (Oyster mushroom)   16
Amanita_thiersii_Skay4041_v1.0 16
Amanita_muscaria_Koide_v1.0   (Fly agaric)   20
Galerina_marginata_v1.0 18
Hebeloma_cylindrosporum_h7_v2.0 15
Laccaria_bicolor_S238N-H82_ 16
Agaricus_bisporus_var._bisporus_ 14
Schizophyllum_commune_ 17
Stereum_hirsutum_FP-91666_SS1__v1.0 20
Heterobasidion_annosum_ 13
Gloeophyllum_trabeumv1.0 20
Punctularia_strigosozonata_v1.0 17
Sebacina_vermifera_MAFF_305830_v1.0 25
Fomitiporia_mediterranea_v1.0 18
Tulasnella_calospora_AL13/4D_v1.0 23
Postia_placenta_ 14
Wolfiporia_cocos_MD-104_SS10__v1.0 18
Fomitopsis_pinicolav1.0 18
Fomitopsis_pinicola_FP-58527_SS1_v3.0 18
Phanerochaete_chrysosporium_RP-78_2.1 13
Dichomitus_squalens 15
Trametes_versicolor_v1.0 19
Tremella_mesenterica_   (Witches' butter)   12
Daldinia_eschscholzii_EC12_v1.0 10
Apiospora_montagnei_NRRL_25634_v1.0 18
Magnaporthe_poae_ATCC_64411_22 10
Magnaporthe_grisea_70-15_ 12
Podospora_anserina_ 11
Sporotrichum_thermophile_ATCC_42464_ 8
Thielavia_terrestris_NRRL_8126_ 9
Chaetomium_globosum_CBS_148.51_ 12
Neurospora_tetrasperma_ 12
Neurospora_discreta_FGSC_8579_ 8
Neurospora_crassa_OR74A_ 11
Cryphonectria_parasitica_   (Chestnut blight fungus)   10
Verticillium_albo-atrum_VaMs.102_ 11
Verticillium_dahliae_VdLs.17_ 12
Acremonium_alcalophilumv_1.0 10
Glomerella_graminicola_22 10
Fusarium_graminearum_ 13
Nectria_haematococca_mpVI_ 12
Fusarium_oxysporum_f._sp._lycopersici_4286_ 11
Fusarium_verticillioides_7600_ 10
Trichoderma_asperellum_CBS_433.97_v1.0 15
Trichoderma_atroviride_ 14
Trichoderma_citrinoviride_v1.0 14
Trichoderma_reesei_1.2 11
Trichoderma_virens_Gv29-8_ 10
Trichoderma_longibrachiatum_ATCC_18648_v1.0 10
Trichoderma_harzianum_CBS_226.95_v1.0 13
Amorphotheca_resinae_v1.0   (Creosote fungus)   11
Botrytis_cinerea_B05.10_ 11
Sclerotinia_sclerotiorum_ 11
Blumeria_graminis_22 11
Didymella_exigua_CBS_183.55_v1.0 11
Leptosphaeria_maculans_22 9
Setosphaeria_turcica_v1.0 12
Cochliobolus_miyabeanus_ATCC_44560_v1.0 11
Cochliobolus_victoriae_FI3_v1.0 11
Cochliobolus_carbonum_26-R-13_v1.0 11
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   11
Alternaria_brassicicola_ 7
Cochliobolus_lunatus_m118_v2.0 11
Pyrenophora_teres_f._teres_22 12
Pyrenophora_tritici-repentis_ 13
Stagonospora_nodorum_ 12
Mycosphaerella_graminicola_IPO323_ 13
Zasmidium_cellare_ATCC_36951_v1.0 7
Dothistroma_septosporum 8
Septoria_musiva_v1.0 7
Mycosphaerella_fijiensis_CIRAD86_ 11
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 9
Paracoccidioides_brasiliensis_Pb18_ 9
Coccidioides_posadasii_RMSCC_3488_ 10
Coccidioides_immitis_RS_ 10
Ajellomyces_dermatitidis_SLH14081_ 11
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 10
Microsporum_canis_CBS_113480_ 11
Trichophyton_equinum_CBS_127.97_ 13
Trichophyton_verrucosum_HKI_0517_ 9
Arthroderma_benhamiae_CBS_112371_ 11
Trichophyton_tonsurans_CBS_112818_ 8
Trichophyton_rubrum_CBS_118892_ 12
Uncinocarpus_reesii_1704_ 9
Aspergillus_zonatus_v1.0 14
Penicillium_chrysogenum_Wisconsin_54-1255_ 11
Penicillium_chrysogenum_v1.0 9
Aspergillus_acidus_v1.0 11
Aspergillus_fumigatus_Af293 6
Aspergillus_brasiliensis_v1.0 9
Aspergillus_nidulans_FGSC_A4_ 10
Aspergillus_sydowii_v1.0 11
Aspergillus_versicolor_v1.0 10
Aspergillus_glaucus 9
Aspergillus_carbonarius_ITEM_5010_ 12
Neosartorya_fischeri_NRRL_181_ 9
Aspergillus_terreus_NIH2624_ 11
Aspergillus_tubingensis_v1.0 10
Aspergillus_wentii_v1.0 15
Aspergillus_oryzae_RIB40_ 11
Aspergillus_niger_22 8
Aspergillus_niger_ATCC_1015_ 8
Aspergillus_flavus_NRRL3357_ 10
Aspergillus_clavatus_NRRL_1_ 13
Penicillium_marneffei_ATCC_18224_ 10
Tuber_melanosporum_Mel28_22 11
Tuber_melanosporum_Vittad_   (Perigord truffle)   11
Hansenula_polymorpha_v2.0 9
Dekkera_bruxellensis_CBS_2499_v2.0 9
Pichia_membranifaciensv1.0 6
Candida_tanzawaensis_NRRL_Y-17324__v1.0 9
Candida_dubliniensis_CD36_ 11
Candida_tropicalis_MYA-3404_ 10
Candida_parapsilosis_ 11
Candida_albicans_SC5314 11
Lodderomyces_elongisporus_NRRL_YB-4239_ 9
Babjeviella_inositovora_NRRL_Y-12698_v1.0 9
Pichia_stipitis_CBS_6054_ 8
Candida_guilliermondii_ATCC_6260_ 9
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 10
Debaromyces_hansenii 11
Wickerhamomyces_anomalus 9
Pichia_pastoris_GS115_ 8
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2
Yarrowia_lipolytica_CLIB122 7
Candida_lusitaniae_ATCC_42720_ 6
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 9
Vanderwaltozyma_polyspora_DSM_70294_ 7
Candida_glabrata_CBS138 7
Kluyveromyces_thermotolerans_CBS_6340 7
Lachancea_kluyveri_ 9
Kluyveromyces_waltii 7
Ashbya_gossypii_ATCC_10895_ 8
Zygosaccharomyces_rouxii_ 7
Saccharomyces_mikatae_MIT 7
Saccharomyces_paradoxus_MIT 5
Saccharomyces_cerevisiae_76   (Baker's yeast)   6
Saccharomyces_bayanus_MIT 4
Kluyveromyces_lactis 8
Schizosaccharomyces_cryophilus_OY26_22 12
Schizosaccharomyces_octosporus_yFS286_ 10
Schizosaccharomyces_japonicus_yFS275_ 13
Schizosaccharomyces_pombe   (Fission yeast)   11
Catenaria_anguillulae_PL171_v1.0 13
Allomyces_macrogynus_ATCC_38327_ 22
Spizellomyces_punctatus_DAOM_BR117_ 12
Dictyostelium_discoideum 8
Dictyostelium_purpureum_ 12
Entamoeba_dispar_1.2 26
Entamoeba_invadens_1.2 24
Entamoeba_histolytica_1 21
Selaginella_moellendorffii_ 28
Pinus_taeda   (Loblolly pine)   63
Picea_abies   (Norway spruce)   43
Eucalyptus_grandis_v201   (Rose gum)   67
Theobroma_cacao_B97-61/B2_v1   (Cacao)   57
Gossypium_raimondii_v221 200
Citrus_clementina_v165 91
Citrus_sinensis_v154   (Sweet orange)   107
Thellungiella_halophila_v173 52
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   72
Capsella_rubella_v183 41
Arabidopsis_lyrata_   (Lyrate rockcress)   46
Arabidopsis_thaliana_10   (Thale cress)   69
Carica_papaya_   (Papaya)   37
Medicago_truncatula_   (Barrel medic)   109
Phaseolus_vulgaris_v186   (French bean)   62
Glycine_max_v109   (Soybean)   122
Cucumis_sativus_v122   (Cucumber)   79
Fragaria_vesca_   (Wild strawberry)   41
Malus_domestica_v196   (Apple)   69
Prunus_persica_v139   (Peach)   48
Linum_usitatissimum_v200   (Flax)   73
Manihot_esculenta_v147   (Cassava)   59
Populus_trichocarpa_v156   (Black cottonwood)   85
Vitis_vinifera_   (Wine grape)   35
Mimulus_guttatus_v140   (Spotted monkey flower)   51
Solanum_lycopersicum_v.2.3   (Tomato)   45
Solanum_tuberosum_   (Potato)   103
Actinidia_chinensis_Hongyang_ 55
Aquilegia_coerulea_v195 105
Triticum_urartu_22 35
Triticum_aestivum_22   (Bread wheat)   137
Aegilops_tauschii_22 40
Brachypodium_distachyon_   (Stiff brome)   68
Oryza_barthii_22   (African wild rice)   57
Oryza_meridionalis_22 77
Oryza_glumaepatula_22 61
Oryza_glaberrima   (African rice)   44
Oryza_punctata_22 66
Oryza_nivara_22 63
Oryza_brachyantha_22   (Malo sina)   45
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   91
Oryza_sativa_v193   (Rice)   86
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   53
Panicum_virgatum_v202   (Switchgrass)   102
Setaria_italica_v164   (Foxtail millet)   66
Zea_mays_subsp._mays_   (Maize)   149
Zea_mays_v181   (Maize)   150
Sorghum_bicolor_   (Sorghum)   39
Musa_balbisiana   (Balbis banana)   37
Musa_acuminata_22   (Wild Malaysian banana)   60
Amborella_trichopoda_22 30
Physcomitrella_patens 26
Coccomyxa_subellipsoidea_sp._C-169_v2 13
Asterochloris_sp._Cgr/DA1pho_v1.0 8
Chlorella_variabilis_sp._NC64A_ 16
Chlorella_vulgaris_ 12
Volvox_carteri_f._nagariensis_ 17
Volvox_carteri_v199 14
Chlamydomonas_reinhardtii_4.0 13
Ostreococcus_sp._RCC809_ 8
Ostreococcus_lucimarinus_CCE9901_ 10
Ostreococcus_tauri_ 7
Bathycoccus_prasinos_ 7
Micromonas_sp._RCC299_ 9
Micromonas_pusilla_CCMP1545_v3.0 17
Cyanidioschyzon_merolae_strain_10D_22 5
Cyanidioschyzon_merolae 5
Porphyridium_purpureum_02_2012 6
Thecamonas_trahens_ATCC_50062_ 10
Bigelowiella_natans_CCMP2755_22 20
Giardia_lamblia_2.3 5
Cyanophora_paradoxa_ 24
Leishmania_mexicana_2.4 19
Leishmania_major_strain_Friedlin_ 21
Leishmania_infantum_JPCM5_2.4 21
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 18
Trypanosoma_vivax_ 18
Trypanosoma_cruzi_strain_CL_Brener 18
Trypanosoma_congolense_2.4 22
Trypanosoma_brucei_gambiense_v4.1 21
Trypanosoma_brucei_TREU927_v4.1 22
Ectocarpus_siliculosus 14
Aureococcus_anophagefferens_ 3
Albugo_laibachii_22 11
Pythium_iwayamai_DAOM_BR242034_22 12
Pythium_arrhenomanes_ATCC_12531_22 7
Pythium_ultimum_v1.7-2 11
Pythium_aphanidermatum_DAOM_BR444_22 11
Pythium_irregulare_DAOM_BR486_22 9
Pythium_vexans_DAOM_BR484_22 12
Phytophthora_ramorum_1.1   (Sudden oak death agent)   8
Phytophthora_sojae_1.1 13
Phytophthora_infestans_T30-4_ 10
Phytophthora_capsici_ 16
Hyaloperonospora_arabidopsidis_22 13
Phaeodactylum_tricornutumCCAP_1055/1 2
Fragilariopsis_cylindrus 16
Thalassiosira_pseudonana_CCMP1335 7
Perkinsus_marinus_ATCC_50983_ 55
Paramecium_tetraurelia_ 31
Tetrahymena_thermophila_SB210_1_ 9
Ichthyophthirius_multifiliis_strain_G5_ 10
Cryptosporidium_hominis 8
Cryptosporidium_muris 12
Cryptosporidium_parvum_Iowa_II 7
Neospora_caninum 12
Toxoplasma_gondii_VEG 8
Toxoplasma_gondii_ME49 10
Toxoplasma_gondii_GT1 8
Babesia_bovis_T2Bo_ 19
Theileria_parva__ 7
Theileria_annulata 10
Plasmodium_falciparum_3D7_ 15
Plasmodium_vivax_SaI-1_7.0 11
Plasmodium_knowlesi_strain_H_ 11
Plasmodium_yoelii_ssp._yoelii_1_ 12
Plasmodium_chabaudi_ 11
Plasmodium_berghei_ANKA_ 10
Symbiodinium_minutum_clade_B1_v1.2 56
Naegleria_gruberi_ 6
Trichomonas_vaginalis_ 60
Guillardia_theta_CCMP2712_v1.0_ 24
Emiliania_huxleyi_CCMP1516_ 28
Leptolyngbya_sp._PCC_7376 1
Pseudanabaena_sp._PCC_7367 1
Acaryochloris_marina_MBIC11017 1
Synechocystis_sp._PCC_6803 1
Thermosynechococcus_elongatus_BP-1 1
Synechococcus_sp._PCC_7502 1
Synechococcus_sp._PCC_6312 1
Synechococcus_sp._CC9311 3
Synechococcus_elongatus_PCC_7942 1
Prochlorococcus_marinus_str._MIT_9515 2
Microcoleus_sp._PCC_7113 1
Trichodesmium_erythraeum_IMS101 1
Geitlerinema_sp._PCC_7407 1
Cyanothece_sp._PCC_8802 1
Gloeocapsa_sp._PCC_7428 1
cyanobacterium_UCYN-A 1
Halothece_sp._PCC_7418 1
Microcystis_aeruginosa_NIES-843 1
Gloeobacter_violaceus_PCC_7421 1
Rivularia_sp._PCC_7116 1
Calothrix_sp._PCC_7507 1
Anabaena_variabilis_ATCC_29413 1
'Nostoc_azollae'_0708 1
Nostoc_sp._PCC_7107 1
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 1
Anabaena_sp._90 1
Haliscomenobacter_hydrossis_DSM_1100 2
Dyadobacter_fermentans_DSM_18053 1
Cytophaga_hutchinsonii_ATCC_33406 1
Runella_slithyformis_DSM_19594 1
Parabacteroides_distasonis_ATCC_8503 0
Prevotella_denticola_F0289 0
Porphyromonas_gingivalis_ATCC_33277 0
Fluviicola_taffensis_DSM_16823 2
Flavobacterium_psychrophilum_JIP02/86 1
Flavobacterium_branchiophilum_FL-15 0
Flavobacterium_columnare_ATCC_49512 0
Flavobacterium_johnsoniae_UW101 0
Phycisphaera_mikurensis_NBRC_102666 1
Isosphaera_pallida_ATCC_43644 1
Planctomyces_limnophilus_DSM_3776 1
Rhodopirellula_baltica_SH_1 0
Pirellula_staleyi_DSM_6068 1
Coraliomargarita_akajimensis_DSM_45221 1
Turneriella_parva_DSM_21527 1
Treponema_brennaborense_DSM_12168 0
Candidatus_Solibacter_usitatus_Ellin6076 2
Bacteriovorax_marinus_SJ 1
Geobacter_daltonii_FRC-32 1
Geobacter_sp._M21 1
Geobacter_uraniireducens_Rf4 1
Geobacter_bemidjiensis_Bem 1
Geobacter_metallireducens_GS-15 1
Haliangium_ochraceum_DSM_14365 1
Sorangium_cellulosum_'So_ce_56' 2
Methylibium_petroleiphilum_PM1 1
Rubrivivax_gelatinosus_IL144 1
Verminephrobacter_eiseniae_EF01-2 1
Alicycliphilus_denitrificans_K601 1
Ramlibacter_tataouinensis_TTB310 2
Delftia_sp._Cs1-4 1
Delftia_acidovorans_SPH-1 1
Polaromonas_sp._JS666 2
Polaromonas_naphthalenivorans_CJ2 4
Variovorax_paradoxus_S110 2
Rhodoferax_ferrireducens_T118 1
Acidovorax_ebreus_TPSY 1
Acidovorax_sp._KKS102 1
Acidovorax_sp._JS42 1
Acidovorax_citrulli_AAC00-1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Comamonas_testosteroni_CNB-2 2
Psychromonas_sp._CNPT3 1
Methylomicrobium_alcaliphilum 1
Methylomonas_methanica_MC09 1
Psychrobacter_sp._G 0
Psychrobacter_arcticus_273-4 0
Psychrobacter_cryohalolentis_K5 0
Methanospirillum_hungatei_JF-1 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   94
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   58
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   27
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   24
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   28
Cryptococcus_neoformans_var._grubii_H99_ 14
Cryptococcus_neoformans_B-3501A_ 14
Cryptococcus_neoformans_JEC21_ 14
Paracoccidioides_brasiliensis_Pb01_ 10
Paracoccidioides_brasiliensis_Pb03_ 8
Coccidioides_posadasii_str._Silveira_ 10
Coccidioides_immitis_RMSCC_3703_ 11
Coccidioides_immitis_RMSCC_2394_ 11
Coccidioides_immitis_H538.4_ 9
Ajellomyces_dermatitidis_ER-3_ 11
Histoplasma_capsulatum_H143 10
Histoplasma_capsulatum_H88 9
Histoplasma_capsulatum_G186AR 11
Aspergillus_fumigatus_A1163_ 7
Candida_albicans_WO-1_ 11
Saccharomyces_cerevisiae_UC5 5
Saccharomyces_cerevisiae_PW5 6
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CLIB382 0
Saccharomyces_cerevisiae_CLIB324 3
Saccharomyces_cerevisiae_CBS7960 8
Saccharomyces_cerevisiae_YJM269 6
Saccharomyces_cerevisiae_T7 6
Saccharomyces_cerevisiae_FostersB 7
Saccharomyces_cerevisiae_FostersO 9
Saccharomyces_cerevisiae_VL3 8
Saccharomyces_cerevisiae_Vin13 12
Saccharomyces_cerevisiae_LalvinQA23 6
Saccharomyces_cerevisiae_AWRI796 5
Saccharomyces_cerevisiae_Sigma1278b 6
Saccharomyces_cerevisiae_W303 6
Saccharomyces_cerevisiae_JAY291 6
Saccharomyces_cerevisiae_AWRI1631 5
Saccharomyces_cerevisiae_YPS163 4
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_T73 4
Saccharomyces_cerevisiae_CLIB215 5
Saccharomyces_cerevisiae_Y10 2
Saccharomyces_cerevisiae_YJM789_ 6
Saccharomyces_cerevisiae_YJM789 6
Saccharomyces_cerevisiae_RM11-1a 6
Saccharomyces_cerevisiae_RM11-1a_ 6
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   6
Schizosaccharomyces_pombe_972h-_ 11
Batrachochytrium_dendrobatidis_JEL423_ 13
Batrachochytrium_dendrobatidis_JAM81_ 13
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   40
Hordeum_vulgare_22   (Domesticated barley)   99
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   50
Trypanosoma_brucei_Lister_427_v4.1 22
Neospora_caninum_Nc-Liverpool_6.2 12
Plasmodium_falciparum_HB3_ 14
Plasmodium_falciparum_Dd2_ 12
Chroococcidiopsis_thermalis_PCC_7203 1
Chamaesiphon_minutus_PCC_6605 1
Synechocystis_sp._PCC_6803_substr._PCC-P 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1
Synechocystis_sp._PCC_6803_substr._GT-I 1
Synechocystis_sp._PCC_6803 1
Cyanobium_gracile_PCC_6307 3
Dactylococcopsis_salina_PCC_8305 1
Synechococcus_sp._JA-2-3B'a(2-13) 1
Synechococcus_sp._JA-3-3Ab 1
Synechococcus_sp._CC9902 2
Synechococcus_sp._RCC307 2
Synechococcus_sp._CC9605 2
Synechococcus_sp._WH_8102 2
Synechococcus_sp._WH_7803 2
Synechococcus_sp._PCC_7002 1
Synechococcus_elongatus_PCC_6301 1
Prochlorococcus_marinus_str._NATL1A 2
Prochlorococcus_marinus_str._MIT_9301 2
Prochlorococcus_marinus_str._AS9601 2
Prochlorococcus_marinus_subsp._marinus_str._CCMP1375 2
Prochlorococcus_marinus_subsp._pastoris_str._CCMP1986 2
Prochlorococcus_marinus_str._MIT_9215 2
Prochlorococcus_marinus_str._MIT_9211 2
Prochlorococcus_marinus_str._MIT_9313 2
Prochlorococcus_marinus_str._MIT_9312 2
Prochlorococcus_marinus_str._MIT_9303 2
Prochlorococcus_marinus_str._NATL2A 2
Crinalium_epipsammum_PCC_9333 1
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 1
Arthrospira_platensis_NIES-39 1
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7425 1
Cyanothece_sp._PCC_7424 1
Cyanothece_sp._ATCC_51142 1
Cyanothece_sp._PCC_8801 1
Cyanobacterium_aponinum_PCC_10605 1
Cyanobacterium_stanieri_PCC_7202 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Stanieria_cyanosphaera_PCC_7437 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Cylindrospermum_stagnale_PCC_7417 1
Anabaena_cylindrica_PCC_7122 1
Porphyromonas_gingivalis_TDC60 0
Porphyromonas_gingivalis_W83 0
Singulisphaera_acidiphila_DSM_18658 3
Geobacter_sp._M18 1
Sorangium_cellulosum_So0157-2 2
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 1
Alicycliphilus_denitrificans_BC 1
Variovorax_paradoxus_B4 2
Variovorax_paradoxus_EPS 2
Alteromonas_macleodii_str._'English_Channel_673' 1
Thioflavicoccus_mobilis_8321 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   45
Pan_troglodytes_69_2.1.4   (Chimpanzee)   46
Gorilla_gorilla_69_3.1   (Western gorilla)   50
Pongo_abelii_69_2   (Sumatran orangutan)   44
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   37
Macaca_mulatta_69_1   (Rhesus monkey)   48
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   56
Otolemur_garnettii_69_3   (Small-eared galago)   44
Microcebus_murinus_69_1   (Gray mouse lemur)   36
Rattus_norvegicus_69_3.4   (Norway rat)   42
Mus_musculus_69_38   (House mouse)   40
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   30
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   36
Cavia_porcellus_69_3   (Domestic guinea pig)   37
Oryctolagus_cuniculus_69_2   (Rabbit)   43
Ochotona_princeps_69   (American pika)   31
Tupaia_belangeri_69   (Northern tree shrew)   39
Sus_scrofa_69_10.2   (Pig)   48
Bos_taurus_69_3.1   (Cattle)   39
Vicugna_pacos_69_1   (Alpaca)   30
Tursiops_truncatus_69_1   (Bottlenose dolphin)   31
Mustela_putorius_furo_69_1.0   (Domestic ferret)   40
Ailuropoda_melanoleuca_69_1   (Giant panda)   31
Canis_familiaris_69_3.1   (Dog)   34
Felis_catus_69   (Domestic cat)   32
Equus_caballus_69_2   (Horse)   33
Myotis_lucifugus_69_2.0   (Little brown bat)   43
Pteropus_vampyrus_69_1   (Large flying fox)   31
Sorex_araneus_69_1   (European shrew)   29
Erinaceus_europaeus_69   (Western European hedgehog)   24
Procavia_capensis_69_1   (Cape rock hyrax)   26
Loxodonta_africana_69_3   (African savanna elephant)   43
Echinops_telfairi_69   (Small Madagascar hedgehog)   37
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   31
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   30
Macropus_eugenii_69_1.0   (Tammar wallaby)   30
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   36
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   37
Ornithorhynchus_anatinus_69_5   (Platypus)   39
Petromyzon_marinus_69_7.0   (Sea lamprey)   26
Meleagris_gallopavo_69_2   (Turkey)   40
Gallus_gallus_69_2   (Chicken)   33
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   33
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   36
Anolis_carolinensis_69_2.0   (Green anole)   36
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   33
Latimeria_chalumnae_69_1   (Coelacanth)   29
Gadus_morhua_69_1   (Atlantic cod)   48
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   40
Takifugu_rubripes_69_4   (Torafugu)   37
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   42
Oryzias_latipes_69_1   (Japanese medaka)   35
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   44
Oreochromis_niloticus_69_1.0   (Nile tilapia)   41
Danio_rerio_69_9   (Zebrafish)   42
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   25
Ciona_intestinalis_69   (Vase tunicate)   26
Drosophila_melanogaster_69_5   (Fruit fly)   25
Caenorhabditis_elegans_69_215   (Roundworm)   20
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   6
Arabidopsis_thaliana_10   (Thale cress)   41

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   264
Homo_sapiens__(NCBI_version)   (Human)   82
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   36
Heliconius_numata__(Incomplete) 20
Loa_loa_v3.3_(Request)   (Eye worm)   24
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   27
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   17
Moniliophthora_perniciosa_FA553__(Genome_survey) 17
Encephalitozoon_intestinalis__(endoparasite) 4
Encephalitozoon_cuniculi_(endoparasite) 6
Picea_sitchensis__(Incomplete)   (Sitka spruce)   14
Lotus_japonicus__(Early_assembly) 73
Malus_x_domestica_(Duplicate)   (Apple)   69
Ricinus_communis__(Early_assembly)   (Castor bean)   36
Nicotiana_benthamiana_0.4.4_(Early_draft) 99
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   47
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   45
Phoenix_dactylifera__(Early_draft)   (Date palm)   54
Guillardia_theta_(nucleomorph) 0
NCBI_plasmid_sequences_(Plasmids) 1
PDB_chains_(SCOP_1.75)_(PDB) 0
UniProt__viral_sequences_(Viral) 0
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 2
Protein_Data_Bank_(all_PDB_sequenc) 60
NCBI_viral_sequences_(Viral) 1
Protozoadb_2010_08_(Protozoadb) 570
STRING_v9.0.5_(STRING) 2761
Uniprot_2018_03_genome 109245
TargetDB__(Targets) 120
NCBI_2017_08_genome 36342

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