SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 55088,48081 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55088 - Methyl-coenzyme M reductase subunits
48081 - Methyl-coenzyme M reductase alpha and beta chain C-terminal domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Methanocella_arvoryzae_MRE50 2
Methanocella_conradii_HZ254 2
Methanocella_paludicola_SANAE 2
Methanosaeta_harundinacea_6Ac 2
Methanosaeta_thermophila_PT 2
Methanosaeta_concilii_GP6 2
Methanosalsum_zhilinae_DSM_4017 2
Methanohalobium_evestigatum_Z-7303 2
Methanococcoides_burtonii_DSM_6242 2
Methanosarcina_acetivorans_C2A 2
Methanosarcina_mazei_Go1 2
Methanosarcina_barkeri_str._Fusaro 2
Methanohalophilus_mahii_DSM_5219 2
Methanosphaerula_palustris_E1-9c 2
Methanoregula_boonei_6A8 2
Methanospirillum_hungatei_JF-1 2
Methanocorpusculum_labreanum_Z 4
Methanoplanus_petrolearius_DSM_11571 4
Methanoculleus_bourgensis_MS2 4
Methanoculleus_marisnigri_JR1 4
Methanopyrus_kandleri_AV19 2
Thermoplasmatales_archaeon_BRNA1 2
Methanotorris_igneus_Kol_5 4
Methanocaldococcus_sp._FS406-22 4
Methanocaldococcus_fervens_AG86 2
Methanocaldococcus_vulcanius_M7 4
methanocaldococcus_infernus_ME 2
Methanocaldococcus_jannaschii_DSM_2661 4
Methanothermococcus_okinawensis_IH1 2
Methanococcus_aeolicus_Nankai-3 2
Methanococcus_maripaludis_C5 2
Methanococcus_voltae_A3 2
Methanococcus_vannielii_SB 2
Methanothermus_fervidus_DSM_2088 4
Methanothermobacter_marburgensis_str._Marburg 4
Methanothermobacter_thermautotrophicus_str._Delta_H 4
Methanosphaera_stadtmanae_DSM_3091 2
Methanobrevibacter_sp._AbM4 2
Methanobrevibacter_ruminantium_M1 2
Methanobrevibacter_smithii_ATCC_35061 4
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 4

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Strains
Genome     Number
Methanomethylovorans_hollandica_DSM_15978 2
Methanolobus_psychrophilus_R15 2
Methanosarcina_mazei_Tuc01 2
Methanoregula_formicica_Methanoregula_formicicum_SMSP 4
Candidatus_Methanomethylophilus_alvus_Mx1201 2
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 2
Methanococcus_maripaludis_X1 2
Methanococcus_maripaludis_C6 2
Methanococcus_maripaludis_C7 2
Methanococcus_maripaludis_S2 2
Methanobacterium_sp._SWAN-1 2

Others
Genome     Number
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 28
STRING_v9.0.5_(STRING) 62
Protein_Data_Bank_(all_PDB_sequenc) 88
NCBI_2017_08_genome 543
Uniprot_2018_03_genome 9807
PDB_chains_(SCOP_1.75)_(PDB) 7

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