SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for 55124,54862,56014 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55124 - Nitrite/Sulfite reductase N-terminal domain-like
54862 - 4Fe-4S ferredoxins
56014 - Nitrite and sulphite reductase 4Fe-4S domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Megasphaera_elsdenii_DSM_20460 1
Acidaminococcus_fermentans_DSM_20731 1
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1
Clostridium_clariflavum_DSM_19732 1
Clostridium_thermocellum_ATCC_27405 1
Ruminococcus_sp. 2
Ruminococcus_bromii 1
Candidatus_Desulforudis_audaxviator_MP104C 1
Thermincola_potens_JR 1
Pelotomaculum_thermopropionicum_SI 1
Desulfosporosinus_acidiphilus_SJ4 3
Desulfosporosinus_orientis_DSM_765 2
Syntrophobotulus_glycolicus_DSM_8271 2
Desulfitobacterium_hafniense_Y51 3
Desulfitobacterium_dehalogenans_ATCC_51507 3
Desulfotomaculum_reducens_MI-1 2
Desulfotomaculum_acetoxidans_DSM_771 2
Desulfotomaculum_kuznetsovii_DSM_6115 1
Desulfotomaculum_carboxydivorans_CO-1-SRB 4
Desulfotomaculum_ruminis_DSM_2154 4
Acetobacterium_woodii_DSM_1030 3
Eubacterium_eligens_ATCC_27750 1
Eubacterium_limosum_KIST612 3
Clostridium_difficile_630 2
Clostridium_sticklandii_DSM_519 1
Clostridium_phytofermentans_ISDg 2
[Ruminococcus]_obeum 2
Eubacterium_rectale_M104/1 1
Eubacterium_rectale_ATCC_33656 1
Coprococcus_sp._ART55/1 1
Roseburia_intestinalis 1
Butyrivibrio_fibrisolvens 1
Clostridium_sp._BNL1100 1
Clostridium_novyi_NT 2
Clostridium_ljungdahlii_DSM_13528 2
Clostridium_beijerinckii_NCIMB_8052 3
Clostridium_tetani_E88 2
Clostridium_perfringens_ATCC_13124 2
Clostridium_cellulovorans_743B 1
Clostridium_botulinum_A_str._ATCC_3502 2
Clostridium_acetobutylicum_ATCC_824 1
Caldicellulosiruptor_kronotskyensis_2002 1
Caldicellulosiruptor_hydrothermalis_108 2
Caldicellulosiruptor_kristjanssonii_177R1B 1
Caldicellulosiruptor_saccharolyticus_DSM_8903 1
Caldicellulosiruptor_bescii_DSM_6725 1
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 2
Thermodesulfobium_narugense_DSM_14796 2
Carboxydothermus_hydrogenoformans_Z-2901 3
Moorella_thermoacetica_ATCC_39073 5
Ammonifex_degensii_KC4 1
Thermoanaerobacter_pseudethanolicus_ATCC_33223 1
Thermoanaerobacter_sp._X514 1
Thermoanaerobacter_italicus_Ab9 1
Thermoanaerobacter_wiegelii_Rt8.B1 1
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 1
Pelodictyon_phaeoclathratiforme_BU-1 1
Chlorobium_luteolum_DSM_273 2
Chlorobium_chlorochromatii_CaD3 1
Chlorobium_phaeobacteroides_DSM_266 1
Chlorobium_phaeovibrioides_DSM_265 1
Chlorobium_limicola_DSM_245 1
Chlorobaculum_parvum_NCIB_8327 1
Chlorobium_tepidum_TLS 2
Prosthecochloris_aestuarii_DSM_271 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1
Sphaerochaeta_pleomorpha_str._Grapes 1
Treponema_azotonutricium_ZAS-9 1
Treponema_primitia_ZAS-2 2
Thermodesulfatator_indicus_DSM_15286 2
Thermodesulfobacterium_sp._OPB45 1
Thermodesulfovibrio_yellowstonii_DSM_11347 2
Sebaldella_termitidis_ATCC_33386 1
Leptotrichia_buccalis_C-1013-b 1
Ilyobacter_polytropus_DSM_2926 1
Desulfarculus_baarsii_DSM_2075 2
Desulfobacca_acetoxidans_DSM_11109 2
Desulfomonile_tiedjei_DSM_6799 2
Syntrophobacter_fumaroxidans_MPOB 2
Desulfurivibrio_alkaliphilus_AHT2 2
Desulfotalea_psychrophila_LSv54 2
Desulfobulbus_propionicus_DSM_2032 2
Desulfatibacillum_alkenivorans_AK-01 2
Desulfobacterium_autotrophicum_HRM2 2
Desulfococcus_oleovorans_Hxd3 2
Desulfohalobium_retbaense_DSM_5692 2
Desulfomicrobium_baculatum_DSM_4028 2
Desulfovibrio_piezophilus 2
Desulfovibrio_aespoeensis_Aspo-2 2
Desulfovibrio_magneticus_RS-1 2
Desulfovibrio_alaskensis_G20 2
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 2
Desulfovibrio_salexigens_DSM_2638 2
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 4
Desulfovibrio_africanus_str._Walvis_Bay 2
Geobacter_daltonii_FRC-32 1
Geobacter_sp._M21 1
Geobacter_uraniireducens_Rf4 1
Geobacter_bemidjiensis_Bem 1
Geobacter_metallireducens_GS-15 1
Thiobacillus_denitrificans_ATCC_25259 4
Sideroxydans_lithotrophicus_ES-1 2
Magnetococcus_marinus_MC-1 2
Magnetospirillum_magneticum_AMB-1 2
Rhodomicrobium_vannielii_ATCC_17100 2
Aeromonas_veronii_B565 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1
Alkalilimnicola_ehrlichii_MLHE-1 2
Thioalkalivibrio_sulfidophilus_HL-EbGr7 2
Halorhodospira_halophila_SL1 2
Allochromatium_vinosum_DSM_180 2
Thiocystis_violascens_DSM_198 2
Candidatus_Ruthia_magnifica_str._Cm_(Calyptogena_magnifica) 2
Candidatus_Vesicomyosocius_okutanii_HA 2
Edwardsiella_tarda_EIB202 1
Escherichia_blattae_DSM_4481 1
Salmonella_bongori_NCTC_12419 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1
Vulcanisaeta_moutnovskia_768-28 2
Vulcanisaeta_distributa_DSM_14429 2
Caldivirga_maquilingensis_IC-167 2
Pyrobaculum_sp._1860 4
Pyrobaculum_calidifontis_JCM_11548 4
Pyrobaculum_arsenaticum_DSM_13514 5
Pyrobaculum_oguniense_TE7 6
Thermoproteus_neutrophilus_V24Sta 2
Pyrobaculum_aerophilum_str._IM2 4
Pyrobaculum_islandicum_DSM_4184 2
Thermoproteus_tenax_Kra_1 6
Methanosaeta_harundinacea_6Ac 1
Methanosaeta_concilii_GP6 1
Methanohalobium_evestigatum_Z-7303 0
Methanococcoides_burtonii_DSM_6242 1
Methanosarcina_acetivorans_C2A 1
Methanosarcina_mazei_Go1 1
Methanosarcina_barkeri_str._Fusaro 1
Methanohalophilus_mahii_DSM_5219 2
Methanosphaerula_palustris_E1-9c 4
Methanoregula_boonei_6A8 2
Methanospirillum_hungatei_JF-1 1
Methanocorpusculum_labreanum_Z 1
Methanoplanus_petrolearius_DSM_11571 1
Methanoculleus_bourgensis_MS2 2
Methanoculleus_marisnigri_JR1 2
Methanopyrus_kandleri_AV19 0
Archaeoglobus_profundus_DSM_5631 2
Archaeoglobus_veneficus_SNP6 2
Archaeoglobus_fulgidus_DSM_4304 2
Methanotorris_igneus_Kol_5 1
Methanocaldococcus_sp._FS406-22 1
Methanocaldococcus_fervens_AG86 1
Methanocaldococcus_vulcanius_M7 1
methanocaldococcus_infernus_ME 0
Methanocaldococcus_jannaschii_DSM_2661 1
Methanothermococcus_okinawensis_IH1 1
Methanococcus_aeolicus_Nankai-3 0
Methanothermus_fervidus_DSM_2088 0
Methanothermobacter_marburgensis_str._Marburg 0
Methanothermobacter_thermautotrophicus_str._Delta_H 0
Methanosphaera_stadtmanae_DSM_3091 1
Methanobrevibacter_sp._AbM4 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Gordonibacter_pamelaeae_7-10-1-b 1
Clostridium_thermocellum_DSM_1313 1
Desulfosporosinus_meridiei_DSM_13257 2
Desulfitobacterium_dichloroeliminans_LMG_P-21439 2
Desulfitobacterium_hafniense_DCB-2 3
Desulfotomaculum_gibsoniae_DSM_7213 1
Clostridium_difficile_BI1 2
Clostridium_difficile_R20291 2
Clostridium_difficile_CD196 2
Coprococcus_catus_GD/7 0
Roseburia_intestinalis_XB6B4 1
Clostridium_sp._SY8519 2
Clostridium_saccharobutylicum_DSM_13864 2
Clostridium_autoethanogenum_DSM_10061 2
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 2
Clostridium_tetani_genome_12124569 2
Clostridium_perfringens_SM101 1
Clostridium_perfringens_str._13 2
Clostridium_botulinum_H04402_065 2
Clostridium_botulinum_BKT015925 1
Clostridium_botulinum_F_str._230613 2
Clostridium_botulinum_F_str._Langeland 2
Clostridium_botulinum_E3_str._Alaska_E43 3
Clostridium_botulinum_B1_str._Okra 2
Clostridium_botulinum_Ba4_str._657 2
Clostridium_botulinum_A2_str._Kyoto 2
Clostridium_botulinum_A3_str._Loch_Maree 2
Clostridium_botulinum_A_str._Hall 2
Clostridium_botulinum_A_str._ATCC_19397 2
Clostridium_acetobutylicum_DSM_1731 1
Clostridium_acetobutylicum_EA_2018 1
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 2
Thermoanaerobacterium_thermosaccharolyticum_M0795 2
Thermoanaerobacter_sp._X513 1
Halobacteroides_halobius_DSM_5150 1
Chlorobium_phaeobacteroides_BS1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1
Fusobacterium_nucleatum_subsp._vincentii_3_1_36A2 1
Fusobacterium_nucleatum_subsp._animalis_4_8 1
Desulfocapsa_sulfexigens_DSM_10523 2
Desulfobacula_toluolica_Tol2 2
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 4
Desulfovibrio_vulgaris_RCH1 2
Desulfovibrio_vulgaris_str._'Miyazaki_F' 2
Desulfovibrio_vulgaris_str._Hildenborough 2
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 2
Desulfovibrio_desulfuricans_ND132 2
Geobacter_sp._M18 1
Geobacter_sulfurreducens_PCA 1
Sulfuricella_denitrificans_skB26 3
Magnetospirillum_gryphiswaldense_MSR-1_v2 2
Aeromonas_hydrophila_ML09-119 1
Thioalkalivibrio_nitratireducens_DSM_14787 4
Thioflavicoccus_mobilis_8321 2
Edwardsiella_tarda_C07-087 1
Edwardsiella_tarda_FL6-60 1
Salmonella_bongori_N268-08 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 1
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1
Escherichia_coli_SE11 1
Methanomethylovorans_hollandica_DSM_15978 1
Methanosarcina_mazei_Tuc01 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 2
Archaeoglobus_sulfaticallidus_PM70-1 2
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 1
Methanococcus_maripaludis_X1 1
Methanococcus_maripaludis_S2 1
Methanobacterium_sp._SWAN-1 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 2
NCBI_viral_sequences_(Viral) 2
PDB_chains_(SCOP_1.75)_(PDB) 4
TargetDB__(Targets) 25
Protein_Data_Bank_(all_PDB_sequenc) 48
STRING_v9.0.5_(STRING) 200
Uniprot_2018_03_genome 28776
NCBI_2017_08_genome 11968

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]